Wall clock time and date at job start Tue Mar 31 2020 13:58:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86802 * 119.99702 * 2 1 4 4 H 1.48504 * 109.46671 * 269.99708 * 3 2 1 5 5 H 1.48493 * 109.47236 * 29.99652 * 3 2 1 6 6 H 1.48501 * 109.47280 * 149.99942 * 3 2 1 7 7 C 1.38814 * 120.00251 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00128 * 179.97438 * 7 2 1 9 9 N 1.36941 * 119.99666 * 0.02562 * 7 2 1 10 10 C 1.47476 * 125.68946 * 359.97438 * 9 7 2 11 11 C 1.55399 * 104.78425 * 155.60089 * 10 9 7 12 12 H 1.08992 * 113.09793 * 157.54025 * 11 10 9 13 13 O 1.42780 * 107.08913 * 281.68680 * 11 10 9 14 14 C 1.42655 * 115.68761 * 166.04799 * 13 11 10 15 15 C 1.53544 * 108.38735 * 295.54424 * 14 13 11 16 16 N 1.47052 * 107.35240 * 55.59618 * 15 14 13 17 17 C 1.34782 * 120.11147 * 130.24824 * 16 15 14 18 18 O 1.21283 * 119.99400 * 180.02562 * 17 16 15 19 19 C 1.50694 * 120.00393 * 359.97438 * 17 16 15 20 20 C 1.52997 * 109.47370 * 180.02562 * 19 17 16 21 21 C 1.53184 * 109.54204 * 294.82541 * 20 19 17 22 22 C 1.53099 * 109.15521 * 183.23946 * 21 20 19 23 23 O 1.42900 * 109.48768 * 57.47801 * 22 21 20 24 24 C 1.42902 * 114.09766 * 298.88240 * 23 22 21 25 25 C 1.53099 * 109.41087 * 61.16054 * 24 23 22 26 26 C 1.45660 * 119.76621 * 310.21698 * 16 15 14 27 27 H 1.09001 * 109.95418 * 165.48685 * 26 16 15 28 28 C 1.48452 * 125.55883 * 180.75129 * 9 7 2 29 29 H 0.96993 * 120.00285 * 0.02562 * 1 2 3 30 30 H 1.08997 * 110.38065 * 36.77051 * 10 9 7 31 31 H 1.08998 * 110.37476 * 274.42167 * 10 9 7 32 32 H 1.09004 * 109.67845 * 55.27176 * 14 13 11 33 33 H 1.09000 * 109.67902 * 175.78078 * 14 13 11 34 34 H 1.09000 * 109.87913 * 175.05761 * 15 14 13 35 35 H 1.08998 * 109.87866 * 296.13829 * 15 14 13 36 36 H 1.08999 * 109.47374 * 300.00968 * 19 17 16 37 37 H 1.09003 * 109.46880 * 60.00381 * 19 17 16 38 38 H 1.08999 * 109.54138 * 54.99885 * 20 19 17 39 39 H 1.08999 * 109.51998 * 303.06050 * 21 20 19 40 40 H 1.09001 * 109.52090 * 63.24592 * 21 20 19 41 41 H 1.09000 * 109.40667 * 297.48981 * 22 21 20 42 42 H 1.09003 * 109.48147 * 177.50445 * 22 21 20 43 43 H 1.09003 * 109.48255 * 301.18216 * 24 23 22 44 44 H 1.08996 * 109.48646 * 181.14467 * 24 23 22 45 45 H 1.08997 * 109.52086 * 182.48880 * 25 24 23 46 46 H 1.08997 * 109.52281 * 62.29988 * 25 24 23 47 47 H 1.09007 * 110.71315 * 62.21400 * 28 9 7 48 48 H 1.09003 * 109.81373 * 300.58190 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4476 2.6527 0.6999 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0904 -1.2021 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 -0.1419 -2.5342 0.0005 11 6 -0.4008 -3.9352 -0.6201 12 1 -1.3692 -4.3526 -0.3445 13 8 -0.2531 -3.8015 -2.0340 14 6 -0.1448 -5.0231 -2.7626 15 6 1.1497 -5.7293 -2.3344 16 7 1.1000 -5.8879 -0.8733 17 6 1.3524 -7.0882 -0.3145 18 8 1.3104 -7.2167 0.8908 19 6 1.6857 -8.2706 -1.1872 20 6 1.9257 -9.5007 -0.3097 21 6 3.1700 -9.2780 0.5556 22 6 3.4487 -10.5441 1.3700 23 8 3.6131 -11.6538 0.4848 24 6 2.4630 -11.9381 -0.3143 25 6 2.1460 -10.7289 -1.1981 26 6 0.7777 -4.7432 -0.0322 27 1 0.5329 -5.0792 0.9755 28 6 1.9397 -3.7395 0.0169 29 1 -0.4850 0.8400 -0.0004 30 1 -0.6007 -1.7575 -0.6111 31 1 -0.5273 -2.4935 1.0193 32 1 -1.0011 -5.6600 -2.5409 33 1 -0.1118 -4.8114 -3.8314 34 1 1.2136 -6.7072 -2.8115 35 1 2.0119 -5.1232 -2.6123 36 1 0.8563 -8.4658 -1.8670 37 1 2.5850 -8.0544 -1.7641 38 1 1.0601 -9.6653 0.3320 39 1 4.0253 -9.0628 -0.0850 40 1 2.9990 -8.4394 1.2305 41 1 2.6109 -10.7350 2.0407 42 1 4.3585 -10.4074 1.9545 43 1 1.6123 -12.1473 0.3343 44 1 2.6627 -12.8056 -0.9432 45 1 1.2434 -10.9269 -1.7761 46 1 2.9799 -10.5439 -1.8752 47 1 2.5213 -3.8877 0.9269 48 1 2.5779 -3.8660 -0.8577 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001083029831.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:58:40 Heat of formation + Delta-G solvation = -112.812337 kcal Electronic energy + Delta-G solvation = -29162.139160 eV Core-core repulsion = 25217.134089 eV Total energy + Delta-G solvation = -3945.005071 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.85462 -40.48342 -39.43390 -37.36045 -35.99167 -35.59084 -34.17745 -31.96807 -31.46731 -30.46087 -29.21777 -28.65890 -26.37717 -24.60679 -24.42859 -24.38222 -22.32589 -21.81450 -20.90884 -19.69268 -19.03743 -18.40739 -17.89391 -17.03473 -16.93886 -16.92717 -16.84269 -16.44362 -16.10844 -15.84034 -15.59684 -15.38981 -15.16282 -14.82342 -14.56216 -14.24359 -13.88282 -13.69183 -13.63015 -13.37776 -13.13769 -13.01812 -12.84319 -12.72900 -12.63108 -12.52711 -12.23062 -12.11601 -12.05384 -11.90959 -11.82479 -11.57557 -11.32460 -11.19147 -11.00859 -10.81329 -10.68747 -10.38880 -9.55847 -8.94059 -7.78829 -5.23677 1.46204 1.48770 1.56765 1.57880 1.81338 2.48922 2.85695 2.99446 3.32127 3.38691 3.55975 3.57636 3.69852 3.80803 3.87472 3.99960 4.04292 4.12166 4.17970 4.23802 4.28951 4.31878 4.37366 4.46437 4.51242 4.58310 4.58706 4.73895 4.76359 4.79792 4.82352 4.85329 4.92445 4.92791 4.96822 5.02622 5.18573 5.26805 5.27950 5.42172 5.42775 5.46744 5.71697 6.22620 6.28826 6.36543 6.48475 7.06394 7.12699 7.71162 8.35279 9.23558 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.023938 B = 0.002894 C = 0.002717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.390359 B = 9674.406635 C =10302.755497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C -0.063 4.063 3 Si 0.983 3.017 4 H -0.284 1.284 5 H -0.292 1.292 6 H -0.272 1.272 7 C -0.240 4.240 8 H 0.078 0.922 9 N -0.616 5.616 10 C 0.163 3.837 11 C 0.074 3.926 12 H 0.090 0.910 13 O -0.387 6.387 14 C 0.038 3.962 15 C 0.072 3.928 16 N -0.602 5.602 17 C 0.507 3.493 18 O -0.577 6.577 19 C -0.124 4.124 20 C -0.072 4.072 21 C -0.155 4.155 22 C 0.063 3.937 23 O -0.404 6.404 24 C 0.052 3.948 25 C -0.142 4.142 26 C 0.116 3.884 27 H 0.089 0.911 28 C 0.136 3.864 29 H 0.249 0.751 30 H 0.089 0.911 31 H 0.006 0.994 32 H 0.067 0.933 33 H 0.127 0.873 34 H 0.141 0.859 35 H 0.069 0.931 36 H 0.129 0.871 37 H 0.115 0.885 38 H 0.064 0.936 39 H 0.066 0.934 40 H 0.065 0.935 41 H 0.047 0.953 42 H 0.095 0.905 43 H 0.051 0.949 44 H 0.111 0.889 45 H 0.098 0.902 46 H 0.079 0.921 47 H 0.016 0.984 48 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.286 -23.853 -7.861 25.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.256 4.256 3 Si 0.811 3.189 4 H -0.210 1.210 5 H -0.218 1.218 6 H -0.198 1.198 7 C -0.368 4.368 8 H 0.096 0.904 9 N -0.342 5.342 10 C 0.038 3.962 11 C 0.015 3.985 12 H 0.108 0.892 13 O -0.306 6.306 14 C -0.038 4.038 15 C -0.050 4.050 16 N -0.334 5.334 17 C 0.298 3.702 18 O -0.457 6.457 19 C -0.163 4.163 20 C -0.091 4.091 21 C -0.192 4.192 22 C -0.013 4.013 23 O -0.323 6.323 24 C -0.024 4.024 25 C -0.180 4.180 26 C 0.010 3.990 27 H 0.107 0.893 28 C 0.010 3.990 29 H 0.059 0.941 30 H 0.107 0.893 31 H 0.024 0.976 32 H 0.085 0.915 33 H 0.145 0.855 34 H 0.159 0.841 35 H 0.087 0.913 36 H 0.146 0.854 37 H 0.133 0.867 38 H 0.082 0.918 39 H 0.085 0.915 40 H 0.084 0.916 41 H 0.066 0.934 42 H 0.113 0.887 43 H 0.069 0.931 44 H 0.129 0.871 45 H 0.117 0.883 46 H 0.098 0.902 47 H 0.034 0.966 48 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 1.423 -23.643 -7.339 24.797 hybrid contribution 0.143 1.391 0.748 1.585 sum 1.565 -22.253 -6.591 23.261 Atomic orbital electron populations 1.69988 1.06169 1.25212 1.58287 1.25624 0.96682 1.00893 1.02401 0.85011 0.77460 0.78852 0.77552 1.21043 1.21791 1.19752 1.19393 0.90862 0.83536 1.43037 0.90435 1.44884 1.02154 1.00344 1.86844 1.21839 0.84624 0.93430 0.96351 1.23773 0.95814 0.97200 0.81725 0.89239 1.87943 1.93855 1.31071 1.17747 1.23245 0.96375 0.86283 0.97931 1.22780 0.99476 1.04293 0.78431 1.47860 1.69298 1.08233 1.08032 1.21605 0.75138 0.84361 0.89059 1.90649 1.53162 1.84742 1.17138 1.21833 1.05659 0.90542 0.98295 1.20935 0.97823 0.93967 0.96417 1.22299 0.98263 0.98663 1.00018 1.22549 1.01928 0.85344 0.91508 1.87890 1.39174 1.49979 1.55288 1.22789 0.88106 0.98119 0.93424 1.22221 1.03899 0.93648 0.98212 1.21803 0.95372 0.86226 0.95627 0.89281 1.21626 0.94692 0.85113 0.97558 0.94121 0.89282 0.97636 0.91525 0.85541 0.84088 0.91284 0.85357 0.86712 0.91754 0.91484 0.91605 0.93441 0.88691 0.93091 0.87108 0.88321 0.90240 0.96581 0.95144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.13 10.09 21.65 0.22 -56.91 16 2 C -0.06 -3.66 5.49 84.86 0.47 -3.20 16 3 Si 0.98 46.44 29.55 68.60 2.03 48.46 16 4 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 5 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 6 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 7 C -0.24 -13.88 10.29 84.03 0.86 -13.01 16 8 H 0.08 4.34 7.83 -2.91 -0.02 4.32 16 9 N -0.62 -33.14 3.43 -688.52 -2.36 -35.50 16 10 C 0.16 8.33 5.47 87.02 0.48 8.81 16 11 C 0.07 2.92 4.13 31.94 0.13 3.06 16 12 H 0.09 3.13 8.14 -2.39 -0.02 3.11 16 13 O -0.39 -14.56 10.11 -148.98 -1.51 -16.06 16 14 C 0.04 0.89 7.02 72.16 0.51 1.40 16 15 C 0.07 1.48 6.29 86.46 0.54 2.02 16 16 N -0.60 -16.87 2.72 -793.28 -2.16 -19.02 16 17 C 0.51 13.30 7.41 87.65 0.65 13.95 16 18 O -0.58 -19.90 13.39 -3.04 -0.04 -19.94 16 19 C -0.12 -1.86 3.53 29.85 0.11 -1.76 16 20 C -0.07 -1.21 1.92 -10.67 -0.02 -1.23 16 21 C -0.15 -3.22 5.13 30.69 0.16 -3.07 16 22 C 0.06 1.25 6.84 72.02 0.49 1.74 16 23 O -0.40 -8.05 10.77 -148.98 -1.60 -9.65 16 24 C 0.05 0.70 6.84 72.02 0.49 1.19 16 25 C -0.14 -1.58 5.43 30.69 0.17 -1.41 16 26 C 0.12 4.34 3.03 45.88 0.14 4.48 16 27 H 0.09 3.61 7.06 -2.39 -0.02 3.60 16 28 C 0.14 6.12 7.00 86.22 0.60 6.72 16 29 H 0.25 14.52 8.31 -92.71 -0.77 13.74 16 30 H 0.09 5.19 5.86 -2.39 -0.01 5.17 16 31 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 32 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.13 2.26 8.14 -2.39 -0.02 2.24 16 34 H 0.14 1.43 5.96 -2.39 -0.01 1.42 16 35 H 0.07 1.63 7.61 -2.39 -0.02 1.62 16 36 H 0.13 1.10 7.60 -2.39 -0.02 1.08 16 37 H 0.11 1.34 8.00 -2.39 -0.02 1.32 16 38 H 0.06 1.29 7.96 -2.39 -0.02 1.27 16 39 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 40 H 0.07 1.78 6.05 -2.39 -0.01 1.77 16 41 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 42 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 43 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 44 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 45 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 46 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 47 H 0.02 0.76 8.14 -2.38 -0.02 0.74 16 48 H 0.03 1.35 7.31 -2.39 -0.02 1.33 16 Total: -1.00 -75.86 364.42 1.30 -74.56 By element: Atomic # 1 Polarization: 13.43 SS G_CDS: 0.94 Total: 14.37 kcal Atomic # 6 Polarization: 13.91 SS G_CDS: 5.77 Total: 19.68 kcal Atomic # 7 Polarization: -107.14 SS G_CDS: -4.30 Total: -111.43 kcal Atomic # 8 Polarization: -42.50 SS G_CDS: -3.15 Total: -45.65 kcal Atomic # 14 Polarization: 46.44 SS G_CDS: 2.03 Total: 48.46 kcal Total: -75.86 1.30 -74.56 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083029831.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.250 kcal (2) G-P(sol) polarization free energy of solvation -75.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds