Wall clock time and date at job start Tue Mar 31 2020 13:59:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86799 * 120.00331 * 2 1 4 4 H 1.48498 * 109.46921 * 269.99652 * 3 2 1 5 5 H 1.48498 * 109.47165 * 29.99666 * 3 2 1 6 6 H 1.48504 * 109.47044 * 149.99681 * 3 2 1 7 7 C 1.38818 * 119.99438 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99492 * 180.02562 * 7 2 1 9 9 N 1.36928 * 119.99933 * 0.02562 * 7 2 1 10 10 C 1.46877 * 125.37073 * 0.02562 * 9 7 2 11 11 C 1.51591 * 106.20621 * 197.62929 * 10 9 7 12 12 H 1.08993 * 109.36386 * 90.59853 * 11 10 9 13 13 O 1.40780 * 109.26142 * 210.26411 * 11 10 9 14 14 C 1.41321 * 118.40535 * 68.64444 * 13 11 10 15 15 C 1.52645 * 111.21844 * 57.49749 * 14 13 11 16 16 N 1.44964 * 111.49367 * 318.20209 * 15 14 13 17 17 C 1.34777 * 117.32589 * 205.36020 * 16 15 14 18 18 O 1.21273 * 120.00396 * 176.30017 * 17 16 15 19 19 C 1.50705 * 119.99494 * 356.30394 * 17 16 15 20 20 C 1.53008 * 109.46930 * 179.97438 * 19 17 16 21 21 C 1.52995 * 109.47028 * 180.02562 * 20 19 17 22 22 H 1.09005 * 110.83271 * 308.64483 * 21 20 19 23 23 C 1.54816 * 110.90647 * 185.00669 * 21 20 19 24 24 C 1.54102 * 104.18388 * 220.92022 * 23 21 20 25 25 O 1.43743 * 107.29556 * 357.96699 * 24 23 21 26 26 C 1.44378 * 106.97427 * 26.51287 * 25 24 23 27 27 C 1.44547 * 125.35442 * 25.07706 * 16 15 14 28 28 H 1.09000 * 109.48524 * 106.13755 * 27 16 15 29 29 C 1.46790 * 125.36475 * 179.97438 * 9 7 2 30 30 H 0.97005 * 119.99431 * 0.02562 * 1 2 3 31 31 H 1.09007 * 110.06637 * 317.05203 * 10 9 7 32 32 H 1.08997 * 110.07294 * 78.52601 * 10 9 7 33 33 H 1.09005 * 109.06410 * 177.47008 * 14 13 11 34 34 H 1.08995 * 109.06806 * 296.47625 * 14 13 11 35 35 H 1.09001 * 107.87026 * 198.56373 * 15 14 13 36 36 H 1.09000 * 110.51308 * 79.59098 * 15 14 13 37 37 H 1.09002 * 109.47096 * 60.00280 * 19 17 16 38 38 H 1.08993 * 109.47160 * 299.99755 * 19 17 16 39 39 H 1.09003 * 109.46699 * 59.99863 * 20 19 17 40 40 H 1.09001 * 109.47198 * 300.00350 * 20 19 17 41 41 H 1.09005 * 110.48409 * 339.58688 * 23 21 20 42 42 H 1.08993 * 110.49172 * 102.24237 * 23 21 20 43 43 H 1.08998 * 109.87682 * 117.39059 * 24 23 21 44 44 H 1.08998 * 109.87388 * 238.39238 * 24 23 21 45 45 H 1.09005 * 110.61631 * 201.44018 * 26 25 24 46 46 H 1.09003 * 110.61963 * 78.44689 * 26 25 24 47 47 H 1.09002 * 109.82486 * 59.37217 * 29 9 7 48 48 H 1.09002 * 109.90076 * 298.45468 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0462 -1.4001 5 1 1.4478 2.6527 0.7000 6 1 3.5478 1.4400 0.7001 7 6 2.0102 -1.2023 0.0005 8 1 3.0901 -1.2023 0.0010 9 7 1.3254 -2.3880 0.0005 10 6 -0.1370 -2.5253 -0.0005 11 6 -0.4288 -3.9459 0.4407 12 1 -0.5388 -3.9722 1.5248 13 8 -1.6247 -4.3825 -0.1603 14 6 -1.6364 -4.5947 -1.5574 15 6 -0.5752 -5.6111 -1.9708 16 7 0.6700 -5.3978 -1.2599 17 6 1.8019 -5.8277 -1.8520 18 8 2.8767 -5.6146 -1.3324 19 6 1.7317 -6.5731 -3.1599 20 6 3.1457 -6.9441 -3.6119 21 6 3.0745 -7.7004 -4.9400 22 1 2.3680 -8.5281 -4.8774 23 6 4.4760 -8.2015 -5.3662 24 6 4.5230 -7.9448 -6.8849 25 8 3.2477 -7.4024 -7.2664 26 6 2.7044 -6.7439 -6.1020 27 6 0.7979 -4.7567 0.0292 28 1 1.0086 -5.5085 0.7899 29 6 1.9371 -3.7224 0.0005 30 1 -0.4849 0.8401 -0.0004 31 1 -0.5799 -1.8138 0.6964 32 1 -0.5277 -2.3580 -1.0042 33 1 -2.6162 -4.9707 -1.8522 34 1 -1.4521 -3.6469 -2.0631 35 1 -0.3981 -5.4937 -3.0399 36 1 -0.9235 -6.6261 -1.7796 37 1 1.2639 -5.9403 -3.9142 38 1 1.1417 -7.4802 -3.0299 39 1 3.6138 -7.5767 -2.8577 40 1 3.7354 -6.0367 -3.7420 41 1 5.2551 -7.6324 -4.8588 42 1 4.5809 -9.2657 -5.1556 43 1 5.3135 -7.2308 -7.1158 44 1 4.7033 -8.8809 -7.4135 45 1 1.6223 -6.6443 -6.1874 46 1 3.1706 -5.7689 -5.9600 47 1 2.5661 -3.8407 0.8829 48 1 2.5357 -3.8562 -0.9006 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001083043572.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:59:17 Heat of formation + Delta-G solvation = -104.737036 kcal Electronic energy + Delta-G solvation = -29144.821542 eV Core-core repulsion = 25200.166642 eV Total energy + Delta-G solvation = -3944.654900 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.21048 -40.47733 -39.76904 -37.69075 -36.15009 -35.54927 -34.31622 -31.97848 -31.58021 -29.89468 -29.59329 -28.69019 -26.63837 -25.37417 -24.59612 -23.38276 -22.51134 -21.36977 -21.16630 -19.81685 -19.16267 -18.26793 -18.15988 -17.53569 -17.07357 -16.90510 -16.60433 -16.38620 -16.27506 -15.95351 -15.67900 -15.39659 -15.07539 -14.97377 -14.46291 -14.34918 -13.94989 -13.85466 -13.75204 -13.47701 -13.17338 -13.07501 -12.85666 -12.73270 -12.46487 -12.33199 -12.27183 -12.20322 -12.10937 -11.92201 -11.86814 -11.66416 -11.58212 -11.38991 -10.82235 -10.77625 -10.63470 -10.35144 -9.56049 -8.91699 -7.86153 -5.27929 1.42202 1.44138 1.53545 1.61081 1.87084 2.44503 2.75882 3.01138 3.25722 3.35373 3.56377 3.61979 3.72196 3.79323 3.83006 3.94802 3.98473 4.10091 4.13610 4.22562 4.27940 4.33963 4.38824 4.43839 4.45765 4.52466 4.61705 4.69065 4.77239 4.83274 4.87701 4.88872 4.89676 5.00356 5.04486 5.06479 5.10374 5.22821 5.36369 5.39572 5.46919 5.63392 5.66230 5.92771 6.18376 6.28624 6.44211 7.04424 7.18950 7.71016 8.32060 9.18240 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.013063 B = 0.003434 C = 0.003009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2142.967386 B = 8151.328212 C = 9304.087410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.061 4.061 3 Si 0.981 3.019 4 H -0.286 1.286 5 H -0.288 1.288 6 H -0.272 1.272 7 C -0.246 4.246 8 H 0.073 0.927 9 N -0.622 5.622 10 C 0.149 3.851 11 C 0.088 3.912 12 H 0.118 0.882 13 O -0.377 6.377 14 C 0.047 3.953 15 C 0.074 3.926 16 N -0.597 5.597 17 C 0.495 3.505 18 O -0.571 6.571 19 C -0.129 4.129 20 C -0.087 4.087 21 C -0.110 4.110 22 H 0.106 0.894 23 C -0.153 4.153 24 C 0.040 3.960 25 O -0.403 6.403 26 C 0.042 3.958 27 C 0.125 3.875 28 H 0.086 0.914 29 C 0.124 3.876 30 H 0.249 0.751 31 H 0.062 0.938 32 H -0.005 1.005 33 H 0.146 0.854 34 H 0.031 0.969 35 H 0.108 0.892 36 H 0.107 0.893 37 H 0.110 0.890 38 H 0.130 0.870 39 H 0.068 0.932 40 H 0.049 0.951 41 H 0.072 0.928 42 H 0.093 0.907 43 H 0.055 0.945 44 H 0.096 0.904 45 H 0.109 0.891 46 H 0.051 0.949 47 H 0.019 0.981 48 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.386 -20.367 -10.663 22.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.254 4.254 3 Si 0.809 3.191 4 H -0.213 1.213 5 H -0.214 1.214 6 H -0.197 1.197 7 C -0.375 4.375 8 H 0.091 0.909 9 N -0.350 5.350 10 C 0.024 3.976 11 C 0.029 3.971 12 H 0.136 0.864 13 O -0.294 6.294 14 C -0.030 4.030 15 C -0.048 4.048 16 N -0.331 5.331 17 C 0.285 3.715 18 O -0.450 6.450 19 C -0.168 4.168 20 C -0.125 4.125 21 C -0.129 4.129 22 H 0.124 0.876 23 C -0.190 4.190 24 C -0.036 4.036 25 O -0.323 6.323 26 C -0.034 4.034 27 C 0.019 3.981 28 H 0.104 0.896 29 C -0.001 4.001 30 H 0.058 0.942 31 H 0.080 0.920 32 H 0.013 0.987 33 H 0.164 0.836 34 H 0.049 0.951 35 H 0.126 0.874 36 H 0.125 0.875 37 H 0.128 0.872 38 H 0.148 0.852 39 H 0.086 0.914 40 H 0.068 0.932 41 H 0.091 0.909 42 H 0.112 0.888 43 H 0.073 0.927 44 H 0.114 0.886 45 H 0.127 0.873 46 H 0.070 0.930 47 H 0.037 0.963 48 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -0.171 -20.098 -10.470 22.662 hybrid contribution 0.964 1.658 0.270 1.936 sum 0.792 -18.440 -10.200 21.088 Atomic orbital electron populations 1.70114 1.06078 1.25281 1.58053 1.25628 0.96709 1.00854 1.02162 0.85046 0.77632 0.78922 0.77521 1.21273 1.21381 1.19657 1.19371 0.90782 0.83792 1.43506 0.90882 1.44579 1.02300 1.01017 1.87140 1.21352 0.84312 0.93798 0.98182 1.22206 0.83555 0.92924 0.98437 0.86440 1.86849 1.32841 1.86794 1.22885 1.22741 1.01552 0.97490 0.81167 1.22135 0.83457 1.01127 0.98069 1.46937 1.08615 1.58118 1.19444 1.21652 0.82861 0.79013 0.87927 1.90657 1.30083 1.57367 1.66925 1.21833 1.00469 1.02040 0.92504 1.21216 0.95325 0.99909 0.96083 1.22709 0.97858 0.98618 0.93692 0.87562 1.23018 0.97397 1.03355 0.95262 1.23290 0.85731 0.99268 0.95329 1.88834 1.34605 1.73611 1.35231 1.23829 1.00512 0.95151 0.83916 1.21247 0.96118 0.94433 0.86260 0.89644 1.21831 0.94764 0.83877 0.99624 0.94152 0.91992 0.98665 0.83632 0.95109 0.87375 0.87475 0.87234 0.85180 0.91360 0.93248 0.90877 0.88837 0.92651 0.88572 0.87305 0.93021 0.96274 0.93490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.43 10.18 21.65 0.22 -57.21 16 2 C -0.06 -3.54 5.48 84.86 0.47 -3.08 16 3 Si 0.98 47.05 29.55 68.60 2.03 49.08 16 4 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 5 H -0.29 -13.60 7.11 99.48 0.71 -12.90 16 6 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 7 C -0.25 -14.59 10.25 84.04 0.86 -13.73 16 8 H 0.07 4.27 7.83 -2.91 -0.02 4.25 16 9 N -0.62 -34.10 3.39 -701.24 -2.37 -36.47 16 10 C 0.15 7.57 5.16 85.85 0.44 8.01 16 11 C 0.09 3.45 3.80 30.03 0.11 3.56 16 12 H 0.12 4.38 8.14 -2.39 -0.02 4.37 16 13 O -0.38 -12.67 10.20 -145.82 -1.49 -14.16 16 14 C 0.05 1.20 6.76 71.86 0.49 1.68 16 15 C 0.07 1.49 5.90 86.55 0.51 2.00 16 16 N -0.60 -17.69 3.08 -805.69 -2.49 -20.18 16 17 C 0.49 14.45 7.05 87.66 0.62 15.07 16 18 O -0.57 -21.83 13.00 -3.01 -0.04 -21.86 16 19 C -0.13 -2.22 4.17 29.85 0.12 -2.10 16 20 C -0.09 -1.60 3.90 30.60 0.12 -1.48 16 21 C -0.11 -1.53 3.09 -9.50 -0.03 -1.56 16 22 H 0.11 1.12 8.14 -2.38 -0.02 1.10 16 23 C -0.15 -2.07 6.60 31.59 0.21 -1.86 16 24 C 0.04 0.62 7.70 72.36 0.56 1.17 16 25 O -0.40 -8.15 11.52 -148.98 -1.72 -9.87 16 26 C 0.04 0.69 6.62 72.66 0.48 1.17 16 27 C 0.12 4.62 3.41 45.56 0.16 4.78 16 28 H 0.09 2.93 8.14 -2.39 -0.02 2.91 16 29 C 0.12 5.84 6.05 86.63 0.52 6.36 16 30 H 0.25 14.60 8.31 -92.70 -0.77 13.83 16 31 H 0.06 3.59 6.25 -2.38 -0.01 3.58 16 32 H 0.00 -0.25 6.36 -2.39 -0.02 -0.26 16 33 H 0.15 2.43 8.14 -2.38 -0.02 2.41 16 34 H 0.03 0.97 6.67 -2.39 -0.02 0.96 16 35 H 0.11 1.59 6.33 -2.39 -0.02 1.57 16 36 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 37 H 0.11 1.55 6.70 -2.39 -0.02 1.53 16 38 H 0.13 1.34 8.09 -2.39 -0.02 1.32 16 39 H 0.07 1.37 8.10 -2.39 -0.02 1.35 16 40 H 0.05 1.16 7.94 -2.39 -0.02 1.15 16 41 H 0.07 1.08 7.86 -2.38 -0.02 1.06 16 42 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 43 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 44 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 45 H 0.11 1.39 8.14 -2.38 -0.02 1.37 16 46 H 0.05 0.96 7.93 -2.39 -0.02 0.94 16 47 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 48 H 0.05 2.38 5.18 -2.39 -0.01 2.36 16 Total: -1.00 -77.84 363.16 0.73 -77.11 By element: Atomic # 1 Polarization: 12.61 SS G_CDS: 0.95 Total: 13.56 kcal Atomic # 6 Polarization: 14.36 SS G_CDS: 5.64 Total: 20.00 kcal Atomic # 7 Polarization: -109.22 SS G_CDS: -4.64 Total: -113.86 kcal Atomic # 8 Polarization: -42.64 SS G_CDS: -3.24 Total: -45.89 kcal Atomic # 14 Polarization: 47.05 SS G_CDS: 2.03 Total: 49.08 kcal Total: -77.84 0.73 -77.11 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083043572.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.629 kcal (2) G-P(sol) polarization free energy of solvation -77.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds