Wall clock time and date at job start Tue Mar 31 2020 13:55:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86803 * 120.00143 * 2 1 4 4 H 1.48495 * 109.47115 * 240.00310 * 3 2 1 5 5 H 1.48497 * 109.47006 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46786 * 119.99913 * 3 2 1 7 7 C 1.38816 * 120.00152 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00059 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99889 * 359.97438 * 7 2 1 10 10 C 1.47429 * 126.05977 * 359.97438 * 9 7 2 11 11 C 1.54505 * 107.14725 * 181.63485 * 10 9 7 12 12 C 1.56025 * 102.60947 * 22.85652 * 11 10 9 13 13 H 1.08997 * 112.86406 * 202.91832 * 12 11 10 14 14 C 1.53093 * 107.06719 * 78.60031 * 12 11 10 15 15 C 1.51815 * 111.32114 * 195.83218 * 14 12 11 16 16 N 1.47157 * 107.95448 * 56.83698 * 15 14 12 17 17 C 1.34778 * 121.21363 * 123.12912 * 16 15 14 18 18 O 1.21275 * 120.00243 * 179.71309 * 17 16 15 19 19 C 1.50706 * 119.99852 * 359.71601 * 17 16 15 20 20 O 1.42907 * 109.46967 * 179.97438 * 19 17 16 21 21 C 1.42897 * 113.99723 * 179.97438 * 20 19 17 22 22 H 1.09002 * 110.43873 * 330.70403 * 21 20 19 23 23 C 1.54816 * 110.59920 * 208.07886 * 21 20 19 24 24 C 1.54989 * 102.09401 * 220.38972 * 23 21 20 25 25 O 1.44383 * 103.48976 * 37.02246 * 24 23 21 26 26 C 1.43739 * 106.97729 * 319.94114 * 25 24 23 27 27 C 1.46755 * 117.56740 * 302.85362 * 16 15 14 28 28 C 1.46462 * 126.05906 * 180.02562 * 9 7 2 29 29 H 1.09005 * 107.86305 * 269.61627 * 28 9 7 30 30 H 0.96993 * 120.00006 * 359.97438 * 1 2 3 31 31 H 1.09009 * 109.90265 * 62.25954 * 10 9 7 32 32 H 1.08999 * 110.05423 * 301.10391 * 10 9 7 33 33 H 1.09002 * 110.78343 * 264.57686 * 11 10 9 34 34 H 1.09006 * 110.94023 * 141.21136 * 11 10 9 35 35 H 1.09003 * 109.25681 * 315.38551 * 14 12 11 36 36 H 1.09007 * 109.25968 * 74.85030 * 14 12 11 37 37 H 1.09000 * 109.44430 * 297.41437 * 15 14 12 38 38 H 1.08995 * 110.09490 * 176.64186 * 15 14 12 39 39 H 1.09004 * 109.47108 * 60.00234 * 19 17 16 40 40 H 1.08997 * 109.47105 * 299.99778 * 19 17 16 41 41 H 1.08999 * 110.90817 * 338.58967 * 23 21 20 42 42 H 1.09005 * 110.90433 * 102.19294 * 23 21 20 43 43 H 1.08999 * 110.62077 * 278.52724 * 24 23 21 44 44 H 1.08999 * 110.75439 * 155.59172 * 24 23 21 45 45 H 1.09005 * 109.87679 * 267.08788 * 26 25 24 46 46 H 1.09000 * 109.88136 * 145.93926 * 26 25 24 47 47 H 1.09005 * 109.22792 * 173.10304 * 27 16 15 48 48 H 1.08997 * 109.23098 * 292.46707 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1039 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1405 -2.5437 0.0005 11 6 -0.4376 -4.0594 0.0422 12 6 0.8724 -4.6466 0.6532 13 1 1.0218 -5.6973 0.4045 14 6 0.8112 -4.4053 2.1637 15 6 2.1757 -4.5792 2.8062 16 7 3.1109 -3.6580 2.1412 17 6 3.8040 -2.7393 2.8427 18 8 4.5729 -1.9946 2.2728 19 6 3.6234 -2.6376 4.3355 20 8 4.4600 -1.5979 4.8467 21 6 4.3637 -1.4170 6.2609 22 1 3.3714 -1.6979 6.6139 23 6 4.6809 0.0487 6.6454 24 6 5.5254 -0.1288 7.9328 25 8 6.3095 -1.3103 7.6610 26 6 5.4468 -2.2402 6.9849 27 6 3.2660 -3.7805 0.6870 28 6 1.9199 -3.7267 -0.0005 29 1 2.0492 -4.0351 -1.0380 30 1 -0.4850 0.8400 0.0004 31 1 -0.5606 -2.1081 -0.9061 32 1 -0.5673 -2.0576 0.8778 33 1 -0.6043 -4.4486 -0.9622 34 1 -1.2927 -4.2712 0.6842 35 1 0.4719 -3.3866 2.3516 36 1 0.1073 -5.1068 2.6117 37 1 2.5121 -5.6071 2.6710 38 1 2.1215 -4.3453 3.8694 39 1 3.8970 -3.5850 4.7999 40 1 2.5816 -2.4100 4.5607 41 1 5.2614 0.5390 5.8639 42 1 3.7657 0.6029 6.8539 43 1 4.8798 -0.2870 8.7966 44 1 6.1730 0.7334 8.0918 45 1 4.9817 -2.9086 7.7095 46 1 6.0200 -2.8177 6.2596 47 1 3.8884 -2.9632 0.3223 48 1 3.7495 -4.7296 0.4561 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001084938681.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:55:12 Heat of formation + Delta-G solvation = -83.642049 kcal Electronic energy + Delta-G solvation = -29579.253018 eV Core-core repulsion = 25635.512866 eV Total energy + Delta-G solvation = -3943.740153 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.14011 -39.64262 -38.17642 -36.77537 -35.00804 -32.81436 -31.67125 -31.21375 -29.73989 -28.92478 -28.44046 -27.21798 -24.61354 -23.66902 -22.88164 -22.53858 -21.46774 -20.02540 -19.82019 -18.27969 -17.50551 -17.02747 -16.59701 -16.22062 -16.01513 -15.55000 -15.28680 -14.99677 -14.69840 -14.36818 -14.01108 -13.97003 -13.69237 -13.11819 -13.09358 -12.86197 -12.59632 -12.38588 -12.33250 -11.99472 -11.78993 -11.66189 -11.60946 -11.36472 -11.24545 -10.92053 -10.89176 -10.77582 -10.63981 -10.11384 -10.10034 -9.86765 -9.83448 -9.65605 -9.57438 -9.48126 -9.20134 -8.50132 -8.13866 -6.74707 -5.61942 -2.93835 2.91832 3.12298 3.52514 3.54082 3.62202 3.70260 3.87847 4.30843 4.61320 4.65130 4.72673 4.80011 4.92506 4.95874 5.05624 5.12770 5.16490 5.24471 5.32434 5.34553 5.47489 5.48534 5.51462 5.52574 5.67624 5.69572 5.71626 5.76789 5.89215 5.96283 6.01284 6.11822 6.24986 6.29525 6.42556 6.46102 6.57975 6.61919 6.73112 6.90809 6.97677 7.15075 7.62672 7.65714 7.85526 7.93414 8.32491 8.68282 9.31954 9.92719 10.56509 11.50313 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.012130 B = 0.004424 C = 0.003585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2307.736804 B = 6327.440276 C = 7809.170657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.007 4.007 3 Si 0.904 3.096 4 H -0.286 1.286 5 H -0.293 1.293 6 H -0.282 1.282 7 C -0.213 4.213 8 H 0.081 0.919 9 N -0.589 5.589 10 C 0.179 3.821 11 C -0.143 4.143 12 C -0.100 4.100 13 H 0.075 0.925 14 C -0.125 4.125 15 C 0.111 3.889 16 N -0.595 5.595 17 C 0.522 3.478 18 O -0.513 6.513 19 C 0.046 3.954 20 O -0.344 6.344 21 C 0.053 3.947 22 H 0.078 0.922 23 C -0.154 4.154 24 C 0.048 3.952 25 O -0.374 6.374 26 C 0.025 3.975 27 C 0.116 3.884 28 C 0.153 3.847 29 H 0.027 0.973 30 H 0.249 0.751 31 H 0.040 0.960 32 H 0.044 0.956 33 H 0.054 0.946 34 H 0.058 0.942 35 H 0.079 0.921 36 H 0.062 0.938 37 H 0.065 0.935 38 H 0.074 0.926 39 H 0.073 0.927 40 H 0.080 0.920 41 H 0.095 0.905 42 H 0.088 0.912 43 H 0.062 0.938 44 H 0.097 0.903 45 H 0.063 0.937 46 H 0.094 0.906 47 H 0.096 0.904 48 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.949 -10.567 13.659 17.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.202 4.202 3 Si 0.735 3.265 4 H -0.213 1.213 5 H -0.219 1.219 6 H -0.209 1.209 7 C -0.342 4.342 8 H 0.099 0.901 9 N -0.315 5.315 10 C 0.054 3.946 11 C -0.182 4.182 12 C -0.119 4.119 13 H 0.093 0.907 14 C -0.163 4.163 15 C -0.012 4.012 16 N -0.330 5.330 17 C 0.308 3.692 18 O -0.387 6.387 19 C -0.034 4.034 20 O -0.262 6.262 21 C -0.005 4.005 22 H 0.096 0.904 23 C -0.192 4.192 24 C -0.029 4.029 25 O -0.293 6.293 26 C -0.052 4.052 27 C -0.007 4.007 28 C 0.044 3.956 29 H 0.045 0.955 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.062 0.938 33 H 0.073 0.927 34 H 0.077 0.923 35 H 0.097 0.903 36 H 0.081 0.919 37 H 0.083 0.917 38 H 0.092 0.908 39 H 0.091 0.909 40 H 0.098 0.902 41 H 0.113 0.887 42 H 0.107 0.893 43 H 0.080 0.920 44 H 0.115 0.885 45 H 0.081 0.919 46 H 0.112 0.888 47 H 0.114 0.886 48 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 3.674 -9.799 13.282 16.909 hybrid contribution -0.278 0.726 0.115 0.786 sum 3.396 -9.073 13.396 16.532 Atomic orbital electron populations 1.69947 1.04789 1.24834 1.57987 1.24684 0.95555 0.97437 1.02571 0.86286 0.78498 0.83394 0.78322 1.21258 1.21915 1.20876 1.19002 0.90581 0.82013 1.42565 0.90119 1.44298 1.01365 0.99267 1.86530 1.21199 0.84358 0.88207 1.00811 1.23152 0.96000 0.99749 0.99252 1.22321 0.97266 0.97789 0.94556 0.90685 1.21631 0.95677 1.03370 0.95585 1.21472 0.90221 0.93184 0.96299 1.47728 1.42535 1.34711 1.08053 1.19820 0.81021 0.80278 0.88071 1.90717 1.36473 1.40626 1.70850 1.22340 0.95670 0.91816 0.93599 1.88150 1.64057 1.54088 1.19859 1.23577 0.98563 0.96009 0.82388 0.90388 1.23234 1.01751 0.95599 0.98589 1.23546 0.94276 0.88952 0.96111 1.88893 1.35264 1.27265 1.77885 1.23759 0.92877 0.92630 0.95954 1.21393 0.99003 1.01529 0.78796 1.20723 0.91114 0.87899 0.95852 0.95534 0.94046 0.94136 0.93794 0.92696 0.92326 0.90261 0.91916 0.91686 0.90805 0.90917 0.90235 0.88682 0.89307 0.92026 0.88499 0.91866 0.88823 0.88623 0.92666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.57 10.38 55.49 0.58 -27.00 16 2 C -0.01 -0.21 5.49 -17.43 -0.10 -0.30 16 3 Si 0.90 23.78 29.55 -169.99 -5.02 18.75 16 4 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 5 H -0.29 -7.64 7.11 56.52 0.40 -7.24 16 6 H -0.28 -7.62 7.11 56.52 0.40 -7.21 16 7 C -0.21 -6.01 9.70 -15.06 -0.15 -6.16 16 8 H 0.08 2.35 6.51 -52.49 -0.34 2.01 16 9 N -0.59 -14.51 3.21 -164.44 -0.53 -15.04 16 10 C 0.18 4.21 4.63 -2.74 -0.01 4.19 16 11 C -0.14 -2.51 6.34 -24.32 -0.15 -2.67 16 12 C -0.10 -1.57 3.65 -88.44 -0.32 -1.90 16 13 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 14 C -0.12 -1.79 5.00 -27.28 -0.14 -1.93 16 15 C 0.11 1.41 6.34 -4.29 -0.03 1.39 16 16 N -0.59 -10.16 2.96 -174.72 -0.52 -10.68 16 17 C 0.52 9.97 7.79 -10.98 -0.09 9.88 16 18 O -0.51 -12.32 15.96 -14.35 -0.23 -12.54 16 19 C 0.05 0.66 4.63 36.01 0.17 0.83 16 20 O -0.34 -5.62 9.50 -55.14 -0.52 -6.14 16 21 C 0.05 0.64 3.52 -25.20 -0.09 0.55 16 22 H 0.08 0.74 7.84 -51.93 -0.41 0.34 16 23 C -0.15 -1.73 6.90 -24.72 -0.17 -1.90 16 24 C 0.05 0.46 7.72 38.21 0.29 0.75 16 25 O -0.37 -4.70 11.52 -35.23 -0.41 -5.11 16 26 C 0.03 0.28 7.52 37.73 0.28 0.56 16 27 C 0.12 2.14 5.68 -4.79 -0.03 2.11 16 28 C 0.15 2.99 2.96 -68.33 -0.20 2.79 16 29 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 31 H 0.04 1.08 7.57 -51.92 -0.39 0.68 16 32 H 0.04 1.15 7.10 -51.93 -0.37 0.78 16 33 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.06 0.92 7.99 -51.93 -0.42 0.51 16 35 H 0.08 1.45 6.96 -51.93 -0.36 1.09 16 36 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 37 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 38 H 0.07 0.76 6.02 -51.93 -0.31 0.44 16 39 H 0.07 0.78 7.90 -51.93 -0.41 0.37 16 40 H 0.08 1.06 7.76 -51.93 -0.40 0.66 16 41 H 0.09 1.26 8.09 -51.93 -0.42 0.84 16 42 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 43 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 45 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.09 1.09 7.97 -51.93 -0.41 0.68 16 47 H 0.10 2.11 5.54 -51.93 -0.29 1.82 16 48 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 LS Contribution 369.26 15.07 5.56 5.56 Total: -1.00 -35.46 369.26 -9.71 -45.17 By element: Atomic # 1 Polarization: 6.72 SS G_CDS: -7.90 Total: -1.18 kcal Atomic # 6 Polarization: 8.92 SS G_CDS: -0.72 Total: 8.20 kcal Atomic # 7 Polarization: -52.24 SS G_CDS: -0.47 Total: -52.71 kcal Atomic # 8 Polarization: -22.64 SS G_CDS: -1.16 Total: -23.80 kcal Atomic # 14 Polarization: 23.78 SS G_CDS: -5.02 Total: 18.75 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -35.46 -9.71 -45.17 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084938681.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.471 kcal (2) G-P(sol) polarization free energy of solvation -35.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds