Wall clock time and date at job start Tue Mar 31 2020 13:55:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86803 * 120.00143 * 2 1 4 4 H 1.48495 * 109.47115 * 240.00310 * 3 2 1 5 5 H 1.48497 * 109.47006 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46786 * 119.99913 * 3 2 1 7 7 C 1.38816 * 120.00152 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00059 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99889 * 359.97438 * 7 2 1 10 10 C 1.47429 * 126.05977 * 359.97438 * 9 7 2 11 11 C 1.54505 * 107.14725 * 181.63485 * 10 9 7 12 12 C 1.56025 * 102.60947 * 22.85652 * 11 10 9 13 13 H 1.08997 * 112.86406 * 202.91832 * 12 11 10 14 14 C 1.53093 * 107.06719 * 78.60031 * 12 11 10 15 15 C 1.51815 * 111.32114 * 195.83218 * 14 12 11 16 16 N 1.47157 * 107.95448 * 56.83698 * 15 14 12 17 17 C 1.34778 * 121.21363 * 123.12912 * 16 15 14 18 18 O 1.21275 * 120.00243 * 179.71309 * 17 16 15 19 19 C 1.50706 * 119.99852 * 359.71601 * 17 16 15 20 20 O 1.42907 * 109.46967 * 179.97438 * 19 17 16 21 21 C 1.42897 * 113.99723 * 179.97438 * 20 19 17 22 22 H 1.09002 * 110.43873 * 330.70403 * 21 20 19 23 23 C 1.54816 * 110.59920 * 208.07886 * 21 20 19 24 24 C 1.54989 * 102.09401 * 220.38972 * 23 21 20 25 25 O 1.44383 * 103.48976 * 37.02246 * 24 23 21 26 26 C 1.43739 * 106.97729 * 319.94114 * 25 24 23 27 27 C 1.46755 * 117.56740 * 302.85362 * 16 15 14 28 28 C 1.46462 * 126.05906 * 180.02562 * 9 7 2 29 29 H 1.09005 * 107.86305 * 269.61627 * 28 9 7 30 30 H 0.96993 * 120.00006 * 359.97438 * 1 2 3 31 31 H 1.09009 * 109.90265 * 62.25954 * 10 9 7 32 32 H 1.08999 * 110.05423 * 301.10391 * 10 9 7 33 33 H 1.09002 * 110.78343 * 264.57686 * 11 10 9 34 34 H 1.09006 * 110.94023 * 141.21136 * 11 10 9 35 35 H 1.09003 * 109.25681 * 315.38551 * 14 12 11 36 36 H 1.09007 * 109.25968 * 74.85030 * 14 12 11 37 37 H 1.09000 * 109.44430 * 297.41437 * 15 14 12 38 38 H 1.08995 * 110.09490 * 176.64186 * 15 14 12 39 39 H 1.09004 * 109.47108 * 60.00234 * 19 17 16 40 40 H 1.08997 * 109.47105 * 299.99778 * 19 17 16 41 41 H 1.08999 * 110.90817 * 338.58967 * 23 21 20 42 42 H 1.09005 * 110.90433 * 102.19294 * 23 21 20 43 43 H 1.08999 * 110.62077 * 278.52724 * 24 23 21 44 44 H 1.08999 * 110.75439 * 155.59172 * 24 23 21 45 45 H 1.09005 * 109.87679 * 267.08788 * 26 25 24 46 46 H 1.09000 * 109.88136 * 145.93926 * 26 25 24 47 47 H 1.09005 * 109.22792 * 173.10304 * 27 16 15 48 48 H 1.08997 * 109.23098 * 292.46707 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1039 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1405 -2.5437 0.0005 11 6 -0.4376 -4.0594 0.0422 12 6 0.8724 -4.6466 0.6532 13 1 1.0218 -5.6973 0.4045 14 6 0.8112 -4.4053 2.1637 15 6 2.1757 -4.5792 2.8062 16 7 3.1109 -3.6580 2.1412 17 6 3.8040 -2.7393 2.8427 18 8 4.5729 -1.9946 2.2728 19 6 3.6234 -2.6376 4.3355 20 8 4.4600 -1.5979 4.8467 21 6 4.3637 -1.4170 6.2609 22 1 3.3714 -1.6979 6.6139 23 6 4.6809 0.0487 6.6454 24 6 5.5254 -0.1288 7.9328 25 8 6.3095 -1.3103 7.6610 26 6 5.4468 -2.2402 6.9849 27 6 3.2660 -3.7805 0.6870 28 6 1.9199 -3.7267 -0.0005 29 1 2.0492 -4.0351 -1.0380 30 1 -0.4850 0.8400 0.0004 31 1 -0.5606 -2.1081 -0.9061 32 1 -0.5673 -2.0576 0.8778 33 1 -0.6043 -4.4486 -0.9622 34 1 -1.2927 -4.2712 0.6842 35 1 0.4719 -3.3866 2.3516 36 1 0.1073 -5.1068 2.6117 37 1 2.5121 -5.6071 2.6710 38 1 2.1215 -4.3453 3.8694 39 1 3.8970 -3.5850 4.7999 40 1 2.5816 -2.4100 4.5607 41 1 5.2614 0.5390 5.8639 42 1 3.7657 0.6029 6.8539 43 1 4.8798 -0.2870 8.7966 44 1 6.1730 0.7334 8.0918 45 1 4.9817 -2.9086 7.7095 46 1 6.0200 -2.8177 6.2596 47 1 3.8884 -2.9632 0.3223 48 1 3.7495 -4.7296 0.4561 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001084938681.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:55:11 Heat of formation + Delta-G solvation = -109.036385 kcal Electronic energy + Delta-G solvation = -29580.354199 eV Core-core repulsion = 25635.512866 eV Total energy + Delta-G solvation = -3944.841334 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.45862 -40.63806 -39.60563 -37.91627 -36.55945 -34.65664 -32.95135 -32.48445 -31.21284 -30.10543 -29.82619 -28.46587 -26.49926 -25.16278 -23.85713 -23.70353 -22.35792 -21.74493 -21.26512 -19.71121 -18.59718 -18.43873 -18.07969 -17.30787 -17.19457 -16.86738 -16.67532 -16.30362 -16.06770 -15.77126 -15.66046 -15.22219 -15.17144 -14.53618 -14.26199 -14.09985 -13.90524 -13.69297 -13.52189 -13.27926 -13.19301 -13.05082 -12.97470 -12.77879 -12.64657 -12.53788 -12.42511 -12.29852 -12.08349 -11.75357 -11.66762 -11.40317 -11.24892 -11.12406 -10.98915 -10.68494 -10.64845 -10.47987 -9.50142 -8.80739 -7.85639 -5.14794 1.33061 1.36240 1.44595 1.63242 1.85429 2.46168 2.77740 2.95184 3.32932 3.43520 3.51543 3.68244 3.85818 3.87326 3.93985 3.98248 4.06169 4.12904 4.16545 4.25230 4.32376 4.34714 4.47168 4.51509 4.55820 4.64587 4.68605 4.69832 4.75554 4.77389 4.86294 4.87561 4.92592 5.00179 5.04464 5.15905 5.18979 5.33799 5.52922 5.66493 5.68528 5.73938 5.79470 5.82744 6.09810 6.22955 6.56078 7.14994 7.30459 7.83088 8.45367 9.24647 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.012130 B = 0.004424 C = 0.003585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2307.736804 B = 6327.440276 C = 7809.170657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C -0.060 4.060 3 Si 0.950 3.050 4 H -0.283 1.283 5 H -0.286 1.286 6 H -0.297 1.297 7 C -0.203 4.203 8 H 0.062 0.938 9 N -0.606 5.606 10 C 0.186 3.814 11 C -0.129 4.129 12 C -0.082 4.082 13 H 0.124 0.876 14 C -0.122 4.122 15 C 0.106 3.894 16 N -0.595 5.595 17 C 0.504 3.496 18 O -0.582 6.582 19 C 0.053 3.947 20 O -0.387 6.387 21 C 0.046 3.954 22 H 0.109 0.891 23 C -0.161 4.161 24 C 0.051 3.949 25 O -0.402 6.402 26 C 0.027 3.973 27 C 0.118 3.882 28 C 0.140 3.860 29 H 0.024 0.976 30 H 0.243 0.757 31 H -0.004 1.004 32 H 0.008 0.992 33 H 0.066 0.934 34 H 0.084 0.916 35 H 0.032 0.968 36 H 0.107 0.893 37 H 0.107 0.893 38 H 0.104 0.896 39 H 0.120 0.880 40 H 0.094 0.906 41 H 0.061 0.939 42 H 0.104 0.896 43 H 0.091 0.909 44 H 0.105 0.895 45 H 0.097 0.903 46 H 0.080 0.920 47 H 0.046 0.954 48 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.081 -14.331 16.125 21.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.253 4.253 3 Si 0.781 3.219 4 H -0.210 1.210 5 H -0.212 1.212 6 H -0.224 1.224 7 C -0.332 4.332 8 H 0.080 0.920 9 N -0.331 5.331 10 C 0.061 3.939 11 C -0.167 4.167 12 C -0.102 4.102 13 H 0.142 0.858 14 C -0.160 4.160 15 C -0.015 4.015 16 N -0.328 5.328 17 C 0.292 3.708 18 O -0.461 6.461 19 C -0.026 4.026 20 O -0.306 6.306 21 C -0.012 4.012 22 H 0.127 0.873 23 C -0.199 4.199 24 C -0.025 4.025 25 O -0.322 6.322 26 C -0.050 4.050 27 C -0.006 4.006 28 C 0.033 3.967 29 H 0.042 0.958 30 H 0.052 0.948 31 H 0.014 0.986 32 H 0.027 0.973 33 H 0.085 0.915 34 H 0.102 0.898 35 H 0.051 0.949 36 H 0.125 0.875 37 H 0.125 0.875 38 H 0.122 0.878 39 H 0.138 0.862 40 H 0.111 0.889 41 H 0.080 0.920 42 H 0.122 0.878 43 H 0.109 0.891 44 H 0.123 0.877 45 H 0.115 0.885 46 H 0.098 0.902 47 H 0.065 0.935 48 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 2.783 -13.629 15.757 21.018 hybrid contribution 0.027 1.855 -0.695 1.982 sum 2.810 -11.773 15.062 19.323 Atomic orbital electron populations 1.70116 1.05378 1.24570 1.59719 1.25228 0.96301 0.99659 1.04087 0.85560 0.77439 0.81341 0.77542 1.20952 1.21167 1.22431 1.19001 0.89984 0.83873 1.40383 0.92014 1.44480 1.02247 1.00337 1.86081 1.20966 0.83426 0.92517 0.96982 1.23015 0.98113 0.94628 1.00961 1.22385 0.93582 0.98997 0.95191 0.85829 1.21628 0.97697 1.01812 0.94816 1.21898 0.88014 0.94158 0.97416 1.47932 1.42619 1.34796 1.07478 1.20845 0.80193 0.79479 0.90259 1.90680 1.39589 1.43314 1.72543 1.22400 0.96221 0.93680 0.90301 1.88115 1.64828 1.55082 1.22559 1.23883 1.00513 0.96374 0.80390 0.87329 1.23300 1.02321 0.95659 0.98602 1.23697 0.94347 0.88461 0.95982 1.88855 1.36792 1.28384 1.78127 1.23822 0.92304 0.92508 0.96350 1.21240 0.97638 1.01580 0.80105 1.21050 0.92935 0.86184 0.96490 0.95807 0.94768 0.98583 0.97350 0.91516 0.89752 0.94949 0.87456 0.87467 0.87819 0.86202 0.88861 0.91984 0.87766 0.89131 0.87727 0.88492 0.90153 0.93531 0.88642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.09 10.38 21.65 0.22 -58.86 16 2 C -0.06 -3.67 5.49 84.86 0.47 -3.20 16 3 Si 0.95 51.40 29.55 68.60 2.03 53.43 16 4 H -0.28 -14.97 7.11 99.48 0.71 -14.27 16 5 H -0.29 -14.99 7.11 99.48 0.71 -14.28 16 6 H -0.30 -16.60 7.11 99.48 0.71 -15.89 16 7 C -0.20 -12.01 9.70 84.03 0.81 -11.19 16 8 H 0.06 3.86 6.51 -2.91 -0.02 3.84 16 9 N -0.61 -30.72 3.21 -674.18 -2.16 -32.88 16 10 C 0.19 8.97 4.63 86.71 0.40 9.37 16 11 C -0.13 -4.20 6.34 32.15 0.20 -3.99 16 12 C -0.08 -2.25 3.65 -9.38 -0.03 -2.29 16 13 H 0.12 2.37 8.14 -2.39 -0.02 2.35 16 14 C -0.12 -2.94 5.00 30.24 0.15 -2.78 16 15 C 0.11 2.14 6.34 85.86 0.54 2.69 16 16 N -0.59 -19.24 2.96 -825.07 -2.45 -21.69 16 17 C 0.50 19.26 7.79 87.66 0.68 19.94 16 18 O -0.58 -29.57 15.96 16.02 0.26 -29.31 16 19 C 0.05 1.44 4.63 71.24 0.33 1.77 16 20 O -0.39 -12.61 9.50 -129.94 -1.23 -13.84 16 21 C 0.05 1.02 3.52 31.59 0.11 1.13 16 22 H 0.11 1.69 7.84 -2.39 -0.02 1.67 16 23 C -0.16 -3.54 6.90 31.89 0.22 -3.32 16 24 C 0.05 0.90 7.72 72.66 0.56 1.46 16 25 O -0.40 -9.57 11.52 -148.98 -1.72 -11.29 16 26 C 0.03 0.54 7.52 72.35 0.54 1.08 16 27 C 0.12 4.27 5.68 85.76 0.49 4.76 16 28 C 0.14 5.34 2.96 44.76 0.13 5.47 16 29 H 0.02 0.94 8.14 -2.38 -0.02 0.92 16 30 H 0.24 14.90 8.31 -92.71 -0.77 14.13 16 31 H 0.00 -0.23 7.57 -2.38 -0.02 -0.25 16 32 H 0.01 0.45 7.10 -2.39 -0.02 0.44 16 33 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 34 H 0.08 2.35 7.99 -2.38 -0.02 2.33 16 35 H 0.03 1.11 6.96 -2.39 -0.02 1.09 16 36 H 0.11 1.74 8.14 -2.38 -0.02 1.72 16 37 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 38 H 0.10 1.52 6.02 -2.39 -0.01 1.50 16 39 H 0.12 2.05 7.90 -2.38 -0.02 2.04 16 40 H 0.09 2.24 7.76 -2.39 -0.02 2.22 16 41 H 0.06 1.75 8.09 -2.39 -0.02 1.73 16 42 H 0.10 1.89 8.14 -2.38 -0.02 1.87 16 43 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 44 H 0.10 1.62 8.14 -2.39 -0.02 1.61 16 45 H 0.10 1.26 8.14 -2.38 -0.02 1.24 16 46 H 0.08 1.78 7.97 -2.39 -0.02 1.76 16 47 H 0.05 2.15 5.54 -2.38 -0.01 2.14 16 48 H 0.10 2.66 8.14 -2.39 -0.02 2.64 16 Total: -1.00 -88.04 369.26 1.51 -86.53 By element: Atomic # 1 Polarization: 6.08 SS G_CDS: 0.94 Total: 7.02 kcal Atomic # 6 Polarization: 15.28 SS G_CDS: 5.62 Total: 20.89 kcal Atomic # 7 Polarization: -109.05 SS G_CDS: -4.39 Total: -113.43 kcal Atomic # 8 Polarization: -51.74 SS G_CDS: -2.69 Total: -54.44 kcal Atomic # 14 Polarization: 51.40 SS G_CDS: 2.03 Total: 53.43 kcal Total: -88.04 1.51 -86.53 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084938681.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.509 kcal (2) G-P(sol) polarization free energy of solvation -88.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds