Wall clock time and date at job start Tue Mar 31 2020 14:33:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30369 * 125.97001 * 2 1 4 4 N 1.39922 * 109.02427 * 179.97438 * 3 2 1 5 5 C 1.46504 * 125.74176 * 180.02562 * 4 3 2 6 6 C 1.34411 * 108.51232 * 359.72535 * 4 3 2 7 7 F 1.35100 * 126.34528 * 180.29023 * 6 4 3 8 8 C 1.38504 * 107.31349 * 0.43163 * 6 4 3 9 9 C 1.47166 * 126.45821 * 179.84077 * 8 6 4 10 10 O 1.21635 * 119.99679 * 269.68166 * 9 8 6 11 11 N 1.34776 * 120.00399 * 89.68865 * 9 8 6 12 12 C 1.46496 * 120.00539 * 179.97438 * 11 9 8 13 13 H 1.09000 * 109.46684 * 34.99724 * 12 11 9 14 14 C 1.52997 * 109.47079 * 274.99997 * 12 11 9 15 15 C 1.53006 * 109.47164 * 179.97438 * 14 12 11 16 16 C 1.52999 * 109.46626 * 59.99702 * 15 14 12 17 17 C 1.52997 * 109.47592 * 300.00035 * 16 15 14 18 18 C 1.52996 * 109.47165 * 60.00300 * 17 16 15 19 19 H 1.08996 * 109.47134 * 59.99508 * 18 17 16 20 20 N 1.46500 * 109.47249 * 180.02562 * 18 17 16 21 21 C 1.36939 * 119.99555 * 274.99674 * 20 18 17 22 22 H 1.07992 * 120.00171 * 359.97438 * 21 20 18 23 23 C 1.38817 * 119.99845 * 180.02562 * 21 20 18 24 24 N 1.31613 * 119.99762 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 119.99917 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47327 * 59.99636 * 25 23 21 27 27 H 1.48502 * 109.46776 * 179.97438 * 25 23 21 28 28 H 1.48494 * 109.46886 * 299.99564 * 25 23 21 29 29 H 1.08992 * 109.47316 * 270.02985 * 1 2 3 30 30 H 1.09002 * 109.46369 * 30.02973 * 1 2 3 31 31 H 1.08998 * 109.46966 * 150.02685 * 1 2 3 32 32 H 1.09003 * 109.46738 * 89.97430 * 5 4 3 33 33 H 1.09003 * 109.46834 * 209.96996 * 5 4 3 34 34 H 1.08996 * 109.47391 * 329.97545 * 5 4 3 35 35 H 0.97008 * 119.99907 * 359.97438 * 11 9 8 36 36 H 1.09001 * 109.46922 * 59.99748 * 14 12 11 37 37 H 1.09000 * 109.47140 * 299.99448 * 14 12 11 38 38 H 1.08993 * 109.46955 * 180.02562 * 15 14 12 39 39 H 1.09000 * 109.47050 * 300.00004 * 15 14 12 40 40 H 1.09000 * 109.47160 * 60.00369 * 16 15 14 41 41 H 1.09002 * 109.46719 * 180.02562 * 16 15 14 42 42 H 1.09000 * 109.47140 * 300.00346 * 17 16 15 43 43 H 1.09001 * 109.47375 * 180.02562 * 17 16 15 44 44 H 0.96992 * 120.00233 * 95.00296 * 20 18 17 45 45 H 0.97005 * 120.00240 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2727 1.0551 0.0000 4 7 3.6112 0.6473 0.0006 5 6 4.7764 1.5353 0.0013 6 6 3.6479 -0.6963 0.0071 7 9 4.7576 -1.4669 0.0152 8 6 2.3374 -1.1445 0.0006 9 6 1.8930 -2.5475 0.0010 10 8 1.7097 -3.1276 -1.0523 11 7 1.6890 -3.1895 1.1683 12 6 1.2461 -4.5859 1.1686 13 1 1.6982 -5.1107 0.3270 14 6 -0.2778 -4.6376 1.0426 15 6 -0.7404 -6.0961 1.0424 16 6 -0.3136 -6.7666 2.3497 17 6 1.2103 -6.7149 2.4757 18 6 1.6728 -5.2565 2.4760 19 1 1.2206 -4.7321 3.3177 20 7 3.1321 -5.2070 2.5960 21 6 3.7194 -5.2563 3.8321 22 1 3.1069 -5.3312 4.7184 23 6 5.1020 -5.2089 3.9459 24 7 5.8485 -5.1171 2.8658 25 14 5.9032 -5.2768 5.6320 26 1 5.5311 -6.5465 6.3062 27 1 7.3792 -5.2108 5.4817 28 1 5.4365 -4.1276 6.4484 29 1 -0.3633 0.0005 1.0276 30 1 -0.3632 0.8898 -0.5143 31 1 -0.3633 -0.8902 -0.5134 32 1 5.0645 1.7557 1.0292 33 1 5.6052 1.0475 -0.5117 34 1 4.5263 2.4633 -0.5128 35 1 1.8355 -2.7270 2.0083 36 1 -0.5817 -4.1602 0.1111 37 1 -0.7300 -4.1129 1.8843 38 1 -1.8260 -6.1328 0.9522 39 1 -0.2882 -6.6205 0.2006 40 1 -0.7658 -6.2421 3.1915 41 1 -0.6428 -7.8057 2.3494 42 1 1.6624 -7.2393 1.6339 43 1 1.5143 -7.1930 3.4069 44 1 3.6822 -5.1393 1.8001 45 1 6.8147 -5.0836 2.9453 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085408928.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:33:11 Heat of formation + Delta-G solvation = -3.132528 kcal Electronic energy + Delta-G solvation = -28642.021448 eV Core-core repulsion = 24610.604896 eV Total energy + Delta-G solvation = -4031.416552 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.170 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.10765 -41.34374 -39.42300 -37.61792 -34.22075 -34.00855 -33.60701 -31.12705 -30.58743 -29.72994 -28.96123 -27.62750 -26.05076 -23.71280 -23.02504 -21.54880 -21.03162 -20.63023 -19.94437 -19.44052 -17.83984 -17.15809 -16.82270 -16.53323 -15.95032 -15.83032 -15.03160 -14.62644 -14.34757 -14.25617 -13.92623 -13.71469 -13.67576 -13.58129 -13.43248 -13.21336 -12.93176 -12.76125 -12.56969 -12.49685 -12.20081 -12.06216 -12.05265 -11.06719 -10.94177 -10.90562 -10.78408 -10.72188 -10.55059 -10.31474 -10.18057 -9.78048 -9.63328 -9.53778 -9.36555 -8.90259 -8.67807 -8.52664 -6.96833 -5.76158 -3.05826 1.40747 1.90229 2.26531 2.87324 3.41364 3.46470 3.47291 3.66243 3.90267 4.34371 4.56268 4.73506 4.91390 5.01702 5.09224 5.09970 5.18266 5.22121 5.29108 5.40014 5.48579 5.54619 5.56758 5.66002 5.72461 5.75233 5.86405 5.92862 5.99156 6.01146 6.14892 6.29756 6.36009 6.48839 6.52062 6.54725 6.61523 6.68231 6.89106 6.93847 7.12249 7.33309 7.68118 7.97469 8.40710 8.62621 9.52360 10.09456 10.44615 11.45528 Molecular weight = 324.17amu Principal moments of inertia in cm(-1) A = 0.008983 B = 0.005370 C = 0.003657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3116.351935 B = 5213.234366 C = 7655.192045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.130 3.870 3 N -0.278 5.278 4 N -0.378 5.378 5 C 0.094 3.906 6 C 0.303 3.697 7 F -0.078 7.078 8 C -0.289 4.289 9 C 0.600 3.400 10 O -0.541 6.541 11 N -0.695 5.695 12 C 0.140 3.860 13 H 0.085 0.915 14 C -0.123 4.123 15 C -0.114 4.114 16 C -0.119 4.119 17 C -0.133 4.133 18 C 0.173 3.827 19 H 0.050 0.950 20 N -0.721 5.721 21 C -0.240 4.240 22 H 0.069 0.931 23 C -0.010 4.010 24 N -0.928 5.928 25 Si 0.904 3.096 26 H -0.286 1.286 27 H -0.292 1.292 28 H -0.287 1.287 29 H 0.085 0.915 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.092 0.908 34 H 0.098 0.902 35 H 0.404 0.596 36 H 0.063 0.937 37 H 0.062 0.938 38 H 0.057 0.943 39 H 0.062 0.938 40 H 0.057 0.943 41 H 0.054 0.946 42 H 0.057 0.943 43 H 0.065 0.935 44 H 0.385 0.615 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.503 10.386 -4.988 15.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.037 4.037 3 N -0.101 5.101 4 N -0.163 5.163 5 C -0.047 4.047 6 C 0.156 3.844 7 F -0.057 7.057 8 C -0.305 4.305 9 C 0.384 3.616 10 O -0.418 6.418 11 N -0.343 5.343 12 C 0.035 3.965 13 H 0.103 0.897 14 C -0.163 4.163 15 C -0.152 4.152 16 C -0.157 4.157 17 C -0.174 4.174 18 C 0.063 3.937 19 H 0.068 0.932 20 N -0.362 5.362 21 C -0.372 4.372 22 H 0.087 0.913 23 C -0.207 4.207 24 N -0.576 5.576 25 Si 0.735 3.265 26 H -0.213 1.213 27 H -0.218 1.218 28 H -0.214 1.214 29 H 0.104 0.896 30 H 0.099 0.901 31 H 0.102 0.898 32 H 0.102 0.898 33 H 0.110 0.890 34 H 0.116 0.884 35 H 0.239 0.761 36 H 0.082 0.918 37 H 0.081 0.919 38 H 0.076 0.924 39 H 0.080 0.920 40 H 0.076 0.924 41 H 0.073 0.927 42 H 0.075 0.925 43 H 0.084 0.916 44 H 0.219 0.781 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -10.316 11.289 -5.558 16.272 hybrid contribution 1.479 -0.808 1.153 2.042 sum -8.837 10.481 -4.406 14.400 Atomic orbital electron populations 1.20297 0.85385 1.04090 1.03741 1.22136 0.97041 0.88127 0.96361 1.77221 0.84258 1.21307 1.27314 1.48613 1.07129 1.02722 1.57796 1.22047 0.83784 0.94478 1.04372 1.17877 0.83812 0.81687 1.01067 1.91757 1.49271 1.71240 1.93414 1.19729 0.90336 0.95832 1.24617 1.16946 0.76781 0.83839 0.84064 1.90765 1.52074 1.67452 1.31498 1.45896 1.66977 1.13269 1.08164 1.21346 0.93461 0.81180 1.00561 0.89733 1.21873 0.95560 0.96999 1.01821 1.21471 0.99866 0.95457 0.98378 1.21580 0.97323 0.99698 0.97142 1.22217 0.93312 0.99613 1.02234 1.20461 0.86721 0.93152 0.93397 0.93167 1.42407 0.99194 1.88075 1.06520 1.19147 0.89764 1.42884 0.85369 0.91290 1.24725 0.96260 1.02942 0.96733 1.69665 1.04363 1.56965 1.26569 0.86333 0.78432 0.77800 0.83968 1.21299 1.21799 1.21414 0.89610 0.90130 0.89774 0.89815 0.88989 0.88354 0.76139 0.91824 0.91947 0.92383 0.91967 0.92394 0.92734 0.92451 0.91642 0.78105 0.93519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.77 10.28 36.00 0.37 -0.40 16 2 C 0.13 1.81 7.26 -82.01 -0.60 1.21 16 3 N -0.28 -3.91 12.49 33.91 0.42 -3.49 16 4 N -0.38 -5.17 3.98 -67.94 -0.27 -5.44 16 5 C 0.09 0.83 11.43 59.85 0.68 1.52 16 6 C 0.30 4.96 8.70 -16.32 -0.14 4.82 16 7 F -0.08 -1.40 17.31 2.25 0.04 -1.37 16 8 C -0.29 -4.76 5.89 -104.97 -0.62 -5.38 16 9 C 0.60 10.87 7.32 -12.64 -0.09 10.78 16 10 O -0.54 -11.33 16.77 5.25 0.09 -11.24 16 11 N -0.69 -11.86 4.91 -54.97 -0.27 -12.13 16 12 C 0.14 2.39 1.97 -67.93 -0.13 2.25 16 13 H 0.08 1.66 7.58 -51.93 -0.39 1.27 16 14 C -0.12 -1.71 5.49 -26.73 -0.15 -1.86 16 15 C -0.11 -1.45 5.92 -26.73 -0.16 -1.61 16 16 C -0.12 -1.61 5.92 -26.73 -0.16 -1.77 16 17 C -0.13 -2.29 5.50 -26.73 -0.15 -2.44 16 18 C 0.17 3.26 2.29 -67.93 -0.16 3.11 16 19 H 0.05 0.94 8.08 -51.93 -0.42 0.52 16 20 N -0.72 -17.35 4.95 -53.43 -0.26 -17.61 16 21 C -0.24 -6.41 9.93 -15.06 -0.15 -6.56 16 22 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 23 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 24 N -0.93 -27.69 13.06 55.49 0.72 -26.97 16 25 Si 0.90 22.03 29.55 -169.99 -5.02 17.01 16 26 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 27 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 28 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 29 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.08 0.87 8.01 -51.93 -0.42 0.45 16 32 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.40 6.74 8.59 -40.82 -0.35 6.39 16 36 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 41 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 43 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 44 H 0.39 10.29 7.80 -40.82 -0.32 9.98 16 45 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 379.79 15.07 5.72 5.72 Total: -1.00 -32.85 379.79 -7.31 -40.16 By element: Atomic # 1 Polarization: 18.99 SS G_CDS: -6.94 Total: 12.05 kcal Atomic # 6 Polarization: 4.84 SS G_CDS: -1.54 Total: 3.30 kcal Atomic # 7 Polarization: -65.98 SS G_CDS: 0.34 Total: -65.64 kcal Atomic # 8 Polarization: -11.33 SS G_CDS: 0.09 Total: -11.24 kcal Atomic # 9 Polarization: -1.40 SS G_CDS: 0.04 Total: -1.37 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -32.85 -7.31 -40.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085408928.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.028 kcal (2) G-P(sol) polarization free energy of solvation -32.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds