Wall clock time and date at job start Tue Mar 31 2020 14:18:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.36820 * 2 1 4 4 C 1.50883 * 109.36664 * 240.38089 * 2 1 3 5 5 C 1.52571 * 109.35642 * 331.69400 * 4 2 1 6 6 H 1.08995 * 108.39264 * 36.15508 * 5 4 2 7 7 N 1.46507 * 108.51402 * 153.73433 * 5 4 2 8 8 C 1.34767 * 120.00041 * 209.76662 * 7 5 4 9 9 O 1.21584 * 120.00478 * 0.02562 * 8 7 5 10 10 C 1.47622 * 119.99874 * 179.97438 * 8 7 5 11 11 N 1.31865 * 126.46071 * 0.02562 * 10 8 7 12 12 N 1.28468 * 110.15736 * 180.02562 * 11 10 8 13 13 H 0.96993 * 124.93214 * 179.97438 * 12 11 10 14 14 C 1.35730 * 110.12974 * 359.97438 * 12 11 10 15 15 C 1.35539 * 107.11680 * 359.73413 * 14 12 11 16 16 F 1.35108 * 127.24121 * 180.29157 * 15 14 12 17 17 C 1.47095 * 114.32908 * 274.98555 * 5 4 2 18 18 C 1.54865 * 110.31746 * 62.80342 * 17 5 4 19 19 N 1.44583 * 109.59867 * 288.73097 * 18 17 5 20 20 C 1.36940 * 118.64567 * 270.70676 * 19 18 17 21 21 H 1.07990 * 120.00077 * 136.24647 * 20 19 18 22 22 C 1.38815 * 119.99999 * 316.24597 * 20 19 18 23 23 N 1.31615 * 119.99788 * 158.88440 * 22 20 19 24 24 Si 1.86806 * 119.99997 * 338.88360 * 22 20 19 25 25 H 1.48498 * 109.47186 * 95.27009 * 24 22 20 26 26 H 1.48496 * 109.46850 * 215.26782 * 24 22 20 27 27 H 1.48501 * 109.46891 * 335.26936 * 24 22 20 28 28 C 1.47597 * 122.71035 * 90.73408 * 19 18 17 29 29 H 1.09003 * 109.46593 * 300.45239 * 1 2 3 30 30 H 1.09003 * 109.46937 * 60.45231 * 1 2 3 31 31 H 1.08998 * 109.46993 * 180.45678 * 1 2 3 32 32 H 1.09002 * 109.47198 * 179.74928 * 3 2 1 33 33 H 1.09003 * 109.47388 * 299.74164 * 3 2 1 34 34 H 1.08994 * 109.47196 * 59.74926 * 3 2 1 35 35 H 1.09002 * 109.49252 * 211.72808 * 4 2 1 36 36 H 1.09000 * 109.49366 * 91.65600 * 4 2 1 37 37 H 0.97005 * 119.99317 * 29.76216 * 7 5 4 38 38 H 1.07998 * 126.43336 * 179.97438 * 14 12 11 39 39 H 1.08989 * 109.33074 * 183.06304 * 17 5 4 40 40 H 1.08997 * 109.32841 * 302.72289 * 17 5 4 41 41 H 1.08993 * 109.45771 * 48.77195 * 18 17 5 42 42 H 1.09002 * 109.44902 * 168.72383 * 18 17 5 43 43 H 0.97003 * 119.99520 * 180.02562 * 23 22 20 44 44 H 1.08999 * 108.95356 * 78.54817 * 28 19 18 45 45 H 1.08996 * 108.94885 * 197.18212 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0374 1.4434 0.0000 4 6 2.0303 -0.7035 -1.2375 5 6 1.0024 -1.7404 -1.6802 6 1 0.0065 -1.3412 -1.4881 7 7 1.1467 -1.9520 -3.1227 8 6 0.0765 -2.3036 -3.8625 9 8 -1.0088 -2.4448 -3.3330 10 6 0.2218 -2.5163 -5.3161 11 7 1.3317 -2.3984 -6.0182 12 7 1.1018 -2.6540 -7.2561 13 1 1.7676 -2.6304 -7.9610 14 6 -0.2081 -2.9620 -7.4339 15 6 -0.8031 -2.8915 -6.2182 16 9 -2.1016 -3.1269 -5.9285 17 6 1.1229 -3.0407 -1.0031 18 6 0.8753 -2.8803 0.5172 19 7 1.9928 -2.1891 1.1203 20 6 3.0503 -2.9274 1.5806 21 1 4.0615 -2.6056 1.3800 22 6 2.8226 -4.0894 2.3050 23 7 3.7635 -5.0056 2.3922 24 14 1.1807 -4.3529 3.1560 25 1 0.2910 -5.1546 2.2780 26 1 1.3965 -5.0762 4.4348 27 1 0.5494 -3.0373 3.4317 28 6 2.0405 -0.7207 1.2610 29 1 -0.3632 0.5209 0.8859 30 1 -0.3633 0.5068 -0.8940 31 1 -0.3633 -1.0276 0.0082 32 1 3.1274 1.4454 0.0045 33 1 1.6769 1.9553 -0.8923 34 1 1.6695 1.9578 0.8877 35 1 2.9755 -1.1996 -1.0167 36 1 2.1790 0.0246 -2.0348 37 1 2.0125 -1.8390 -3.5452 38 1 -0.6854 -3.2190 -8.3680 39 1 0.3894 -3.7324 -1.4171 40 1 2.1248 -3.4390 -1.1628 41 1 -0.0366 -2.3053 0.6778 42 1 0.7688 -3.8645 0.9733 43 1 3.6042 -5.8177 2.8981 44 1 1.4245 -0.4262 2.1107 45 1 3.0700 -0.4165 1.4500 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001089483440.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:24 Heat of formation + Delta-G solvation = 33.298505 kcal Electronic energy + Delta-G solvation = -28881.446432 eV Core-core repulsion = 24851.609649 eV Total energy + Delta-G solvation = -4029.836784 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.170 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -48.79681 -42.95201 -40.12721 -38.42600 -34.83634 -34.52052 -32.44928 -31.55509 -30.95459 -30.45128 -27.70533 -27.05217 -25.68054 -24.86652 -23.70391 -22.26063 -21.68568 -20.37343 -19.82630 -19.19096 -18.09926 -17.18172 -16.64412 -16.50394 -16.30371 -16.12433 -15.33700 -15.20602 -14.77024 -14.69963 -14.43627 -14.16910 -13.94019 -13.48045 -13.16961 -12.87451 -12.73680 -12.61506 -12.34520 -11.92348 -11.80203 -11.60922 -11.45964 -11.33211 -10.93068 -10.74744 -10.60552 -10.45615 -10.26702 -10.03535 -9.89632 -9.83473 -9.72400 -9.55049 -9.34775 -9.26225 -8.72685 -8.42338 -6.63293 -5.96291 -3.43145 1.19921 1.55095 2.30962 3.17001 3.34784 3.38622 3.51542 3.58670 3.96379 4.28167 4.49524 4.57869 4.83259 5.00157 5.03517 5.10581 5.24033 5.30837 5.44369 5.60158 5.75809 5.83755 5.93255 6.00615 6.03577 6.08734 6.16619 6.18224 6.26531 6.29101 6.41757 6.45382 6.52418 6.57620 6.65072 6.78857 6.81711 6.87800 6.92134 6.95673 7.17664 7.25267 7.73318 8.16338 8.33656 8.46826 9.11338 9.76881 10.17544 11.18779 Molecular weight = 324.17amu Principal moments of inertia in cm(-1) A = 0.014906 B = 0.003784 C = 0.003459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1878.036234 B = 7398.501287 C = 8093.032250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.079 4.079 3 C -0.133 4.133 4 C -0.103 4.103 5 C 0.142 3.858 6 H 0.097 0.903 7 N -0.708 5.708 8 C 0.596 3.404 9 O -0.526 6.526 10 C -0.024 4.024 11 N -0.233 5.233 12 N -0.371 5.371 13 H 0.456 0.544 14 C -0.041 4.041 15 C 0.037 3.963 16 F -0.099 7.099 17 C -0.152 4.152 18 C 0.146 3.854 19 N -0.601 5.601 20 C -0.274 4.274 21 H 0.074 0.926 22 C 0.042 3.958 23 N -0.900 5.900 24 Si 0.876 3.124 25 H -0.285 1.285 26 H -0.302 1.302 27 H -0.268 1.268 28 C 0.159 3.841 29 H 0.050 0.950 30 H 0.048 0.952 31 H 0.077 0.923 32 H 0.055 0.945 33 H 0.049 0.951 34 H 0.052 0.948 35 H 0.082 0.918 36 H 0.057 0.943 37 H 0.401 0.599 38 H 0.198 0.802 39 H 0.054 0.946 40 H 0.072 0.928 41 H 0.046 0.954 42 H 0.054 0.946 43 H 0.262 0.738 44 H 0.019 0.981 45 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.138 8.701 -20.072 22.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.080 4.080 3 C -0.191 4.191 4 C -0.141 4.141 5 C 0.040 3.960 6 H 0.115 0.885 7 N -0.358 5.358 8 C 0.379 3.621 9 O -0.400 6.400 10 C -0.186 4.186 11 N -0.069 5.069 12 N -0.087 5.087 13 H 0.302 0.698 14 C -0.186 4.186 15 C 0.007 3.993 16 F -0.078 7.078 17 C -0.193 4.193 18 C 0.019 3.981 19 N -0.324 5.324 20 C -0.403 4.403 21 H 0.091 0.909 22 C -0.159 4.159 23 N -0.541 5.541 24 Si 0.705 3.295 25 H -0.213 1.213 26 H -0.229 1.229 27 H -0.192 1.192 28 C 0.034 3.966 29 H 0.069 0.931 30 H 0.067 0.933 31 H 0.095 0.905 32 H 0.074 0.926 33 H 0.068 0.932 34 H 0.072 0.928 35 H 0.100 0.900 36 H 0.075 0.925 37 H 0.236 0.764 38 H 0.215 0.785 39 H 0.073 0.927 40 H 0.091 0.909 41 H 0.064 0.936 42 H 0.072 0.928 43 H 0.072 0.928 44 H 0.037 0.963 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -4.821 8.719 -19.415 21.822 hybrid contribution -1.132 -0.637 -0.336 1.341 sum -5.953 8.082 -19.751 22.155 Atomic orbital electron populations 1.22406 0.95539 1.02886 1.00698 1.20683 0.95424 0.95062 0.96866 1.21835 1.00905 0.95316 1.01072 1.21306 0.99736 0.96576 0.96462 1.20455 1.01951 0.96687 0.76953 0.88513 1.46283 1.11058 1.68726 1.09715 1.16723 0.84867 0.77705 0.82846 1.90843 1.26254 1.51439 1.71478 1.22393 0.89949 1.09959 0.96315 1.73652 1.24530 1.17628 0.91124 1.43019 1.08668 1.49787 1.07254 0.69796 1.22664 0.86013 1.09775 1.00105 1.17213 0.80970 1.08882 0.92249 1.91550 1.30417 1.92325 1.93517 1.21761 1.02727 0.95839 0.98984 1.21182 0.90260 0.96586 0.90090 1.43834 1.19950 1.00634 1.67932 1.18757 0.87168 1.05097 1.29241 0.90869 1.25574 0.96566 0.96798 0.96957 1.69867 1.34466 1.07651 1.42102 0.86915 0.85321 0.78107 0.79113 1.21260 1.22945 1.19237 1.21346 0.99039 0.83848 0.92404 0.93116 0.93299 0.90453 0.92634 0.93233 0.92845 0.89977 0.92455 0.76419 0.78524 0.92735 0.90946 0.93610 0.92830 0.92781 0.96321 0.92373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.44 6.76 37.16 0.25 -2.19 16 2 C -0.08 -1.23 0.75 -155.08 -0.12 -1.35 16 3 C -0.13 -1.73 8.15 37.16 0.30 -1.42 16 4 C -0.10 -1.61 4.38 -28.01 -0.12 -1.74 16 5 C 0.14 2.40 1.79 -70.98 -0.13 2.27 16 6 H 0.10 1.72 3.95 -51.93 -0.20 1.52 16 7 N -0.71 -10.75 4.88 -57.83 -0.28 -11.04 16 8 C 0.60 9.81 7.67 -12.44 -0.10 9.71 16 9 O -0.53 -10.40 16.17 5.29 0.09 -10.32 16 10 C -0.02 -0.32 7.13 -82.74 -0.59 -0.91 16 11 N -0.23 -2.49 11.91 33.43 0.40 -2.09 16 12 N -0.37 -2.42 6.86 30.63 0.21 -2.21 16 13 H 0.46 0.94 8.96 -190.45 -1.71 -0.77 16 14 C -0.04 -0.29 12.06 -16.79 -0.20 -0.49 16 15 C 0.04 0.45 8.03 -39.27 -0.32 0.13 16 16 F -0.10 -1.41 17.03 2.25 0.04 -1.37 16 17 C -0.15 -3.04 5.20 -28.58 -0.15 -3.19 16 18 C 0.15 3.22 4.41 -4.08 -0.02 3.20 16 19 N -0.60 -13.84 1.74 -172.09 -0.30 -14.14 16 20 C -0.27 -7.47 9.65 -15.06 -0.15 -7.61 16 21 H 0.07 2.15 8.06 -52.49 -0.42 1.73 16 22 C 0.04 1.20 5.25 -17.43 -0.09 1.11 16 23 N -0.90 -27.33 13.97 55.49 0.78 -26.56 16 24 Si 0.88 22.51 25.26 -169.99 -4.29 18.22 16 25 H -0.28 -7.24 6.74 56.52 0.38 -6.86 16 26 H -0.30 -7.85 7.11 56.52 0.40 -7.45 16 27 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 28 C 0.16 3.08 5.14 -2.94 -0.02 3.06 16 29 H 0.05 0.73 8.13 -51.93 -0.42 0.31 16 30 H 0.05 0.69 7.90 -51.93 -0.41 0.28 16 31 H 0.08 1.33 3.16 -51.93 -0.16 1.16 16 32 H 0.05 0.70 8.12 -51.93 -0.42 0.28 16 33 H 0.05 0.58 8.08 -51.93 -0.42 0.16 16 34 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.08 1.46 7.48 -51.93 -0.39 1.08 16 36 H 0.06 0.78 7.63 -51.93 -0.40 0.39 16 37 H 0.40 5.32 8.33 -40.82 -0.34 4.98 16 38 H 0.20 0.53 8.06 -52.49 -0.42 0.11 16 39 H 0.05 1.11 7.95 -51.94 -0.41 0.70 16 40 H 0.07 1.57 8.14 -51.93 -0.42 1.15 16 41 H 0.05 0.95 5.22 -51.93 -0.27 0.68 16 42 H 0.05 1.32 3.80 -51.93 -0.20 1.12 16 43 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 44 H 0.02 0.37 7.98 -51.93 -0.41 -0.04 16 45 H 0.06 1.14 7.71 -51.93 -0.40 0.74 16 LS Contribution 350.24 15.07 5.28 5.28 Total: -1.00 -34.31 350.24 -6.94 -41.25 By element: Atomic # 1 Polarization: 9.80 SS G_CDS: -7.42 Total: 2.39 kcal Atomic # 6 Polarization: 2.02 SS G_CDS: -1.43 Total: 0.59 kcal Atomic # 7 Polarization: -56.84 SS G_CDS: 0.80 Total: -56.04 kcal Atomic # 8 Polarization: -10.40 SS G_CDS: 0.09 Total: -10.32 kcal Atomic # 9 Polarization: -1.41 SS G_CDS: 0.04 Total: -1.37 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -4.29 Total: 18.22 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -34.31 -6.94 -41.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089483440.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.551 kcal (2) G-P(sol) polarization free energy of solvation -34.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.252 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds