Wall clock time and date at job start Tue Mar 31 2020 14:09:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53006 * 109.49566 * 2 1 4 4 C 1.53039 * 109.49894 * 120.06434 * 2 1 3 5 5 C 1.53042 * 109.53628 * 58.58428 * 4 2 1 6 6 C 1.53194 * 109.31014 * 61.36806 * 5 4 2 7 7 H 1.08996 * 109.58827 * 65.29745 * 6 5 4 8 8 C 1.52999 * 109.58592 * 185.57689 * 6 5 4 9 9 N 1.46507 * 109.47280 * 179.97438 * 8 6 5 10 10 C 1.34772 * 120.00104 * 179.97438 * 9 8 6 11 11 O 1.21584 * 119.99947 * 0.02562 * 10 9 8 12 12 C 1.47614 * 120.00238 * 179.97438 * 10 9 8 13 13 N 1.31879 * 126.45402 * 359.68880 * 12 10 9 14 14 N 1.28466 * 110.15216 * 179.81705 * 13 12 10 15 15 H 0.96998 * 124.93719 * 180.16308 * 14 13 12 16 16 C 1.35731 * 110.13432 * 0.45512 * 14 13 12 17 17 C 1.35539 * 107.11717 * 359.72899 * 16 14 13 18 18 F 1.35100 * 127.24836 * 179.97438 * 17 16 14 19 19 N 1.46926 * 108.77600 * 305.35997 * 6 5 4 20 20 C 1.36929 * 120.63554 * 233.61039 * 19 6 5 21 21 H 1.08004 * 120.00080 * 30.96337 * 20 19 6 22 22 C 1.38813 * 120.00558 * 210.96702 * 20 19 6 23 23 N 1.31624 * 119.99556 * 14.13550 * 22 20 19 24 24 Si 1.86795 * 120.00488 * 194.13433 * 22 20 19 25 25 H 1.48506 * 109.47018 * 89.99847 * 24 22 20 26 26 H 1.48497 * 109.47368 * 209.99640 * 24 22 20 27 27 H 1.48499 * 109.47064 * 330.00357 * 24 22 20 28 28 C 1.46933 * 118.73369 * 53.60972 * 19 6 5 29 29 H 1.08996 * 109.47012 * 299.93364 * 1 2 3 30 30 H 1.08994 * 109.47086 * 59.93345 * 1 2 3 31 31 H 1.08999 * 109.46978 * 179.97438 * 1 2 3 32 32 H 1.09006 * 109.46665 * 180.02562 * 3 2 1 33 33 H 1.08993 * 109.47132 * 300.06387 * 3 2 1 34 34 H 1.09003 * 109.46642 * 60.06595 * 3 2 1 35 35 H 1.08999 * 109.46280 * 298.57053 * 4 2 1 36 36 H 1.08995 * 109.45153 * 178.60048 * 4 2 1 37 37 H 1.08998 * 109.50356 * 301.41531 * 5 4 2 38 38 H 1.08999 * 109.52490 * 181.32987 * 5 4 2 39 39 H 1.09000 * 109.47613 * 59.99271 * 8 6 5 40 40 H 1.09004 * 109.47274 * 299.99349 * 8 6 5 41 41 H 0.96998 * 119.99206 * 0.27539 * 9 8 6 42 42 H 1.08005 * 126.44398 * 179.71966 * 16 14 13 43 43 H 0.97001 * 119.99845 * 179.97438 * 23 22 20 44 44 H 1.09002 * 109.58221 * 186.60262 * 28 19 6 45 45 H 1.08995 * 109.70078 * 66.25216 * 28 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0407 1.4423 0.0000 4 6 2.0409 -0.7227 1.2485 5 6 1.5030 -2.1554 1.2666 6 6 2.0141 -2.9040 0.0316 7 1 3.0977 -3.0065 0.0888 8 6 1.3703 -4.2905 -0.0306 9 7 1.8602 -5.0039 -1.2127 10 6 1.4271 -6.2532 -1.4735 11 8 0.6294 -6.7881 -0.7279 12 6 1.9203 -6.9718 -2.6649 13 7 2.7759 -6.5139 -3.5578 14 7 2.9889 -7.4009 -4.4623 15 1 3.5839 -7.2896 -5.2202 16 6 2.2554 -8.5140 -4.2070 17 6 1.5591 -8.2804 -3.0678 18 9 0.7008 -9.1192 -2.4475 19 7 1.6515 -2.1385 -1.1690 20 6 0.9636 -2.7318 -2.1935 21 1 0.2675 -3.5309 -1.9851 22 6 1.1607 -2.3064 -3.5000 23 7 2.1909 -1.5422 -3.7949 24 14 -0.0361 -2.8185 -4.8398 25 1 -1.1258 -1.8146 -4.9402 26 1 0.6804 -2.9029 -6.1377 27 1 -0.6144 -4.1450 -4.5063 28 6 2.0413 -0.7241 -1.2493 29 1 -0.3633 0.5128 0.8905 30 1 -0.3633 0.5148 -0.8893 31 1 -0.3633 -1.0277 -0.0005 32 1 3.1307 1.4418 -0.0005 33 1 1.6767 1.9566 -0.8894 34 1 1.6785 1.9559 0.8906 35 1 1.6988 -0.1953 2.1390 36 1 3.1305 -0.7440 1.2353 37 1 0.4133 -2.1352 1.2547 38 1 1.8476 -2.6625 2.1678 39 1 0.2871 -4.1859 -0.0927 40 1 1.6301 -4.8523 0.8667 41 1 2.4996 -4.5786 -1.8053 42 1 2.2310 -9.4163 -4.8001 43 1 2.3289 -1.2452 -4.7080 44 1 1.6007 -0.2737 -2.1388 45 1 3.1272 -0.6445 -1.2992 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001089691081.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:09:31 Heat of formation + Delta-G solvation = 12.177540 kcal Electronic energy + Delta-G solvation = -29172.342384 eV Core-core repulsion = 25141.589727 eV Total energy + Delta-G solvation = -4030.752657 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.170 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -48.47517 -42.52308 -39.14771 -38.22345 -35.03161 -33.16611 -32.31782 -31.46640 -30.44013 -29.95182 -27.50068 -26.57855 -25.44375 -24.44323 -22.77553 -22.17953 -21.62891 -20.06584 -19.64539 -18.72825 -17.86930 -17.00147 -16.25153 -16.08350 -15.77438 -15.48994 -15.29514 -14.81052 -14.39258 -14.18025 -14.01955 -13.84211 -13.60260 -13.35946 -13.25189 -12.88857 -12.49573 -12.30370 -12.12664 -11.63009 -11.37245 -11.25428 -11.11643 -10.87621 -10.84553 -10.75892 -10.58061 -10.36582 -10.08414 -10.04467 -9.76696 -9.62994 -9.46751 -9.38679 -9.22572 -8.88779 -8.52863 -8.17356 -6.60080 -5.79911 -3.24865 1.66210 1.93747 2.72707 3.34501 3.41469 3.46255 3.63760 3.83528 4.40530 4.47577 4.66843 4.88147 5.21453 5.23719 5.34460 5.48592 5.52314 5.54885 5.65239 5.79377 5.91389 6.06510 6.13913 6.20348 6.26801 6.35143 6.39362 6.44910 6.48974 6.50758 6.51841 6.56011 6.68922 6.83754 6.94025 6.97606 7.04970 7.15851 7.19194 7.41732 7.69622 7.70879 7.84557 8.31399 8.44977 8.84781 9.21095 9.82384 10.40225 11.27012 Molecular weight = 324.17amu Principal moments of inertia in cm(-1) A = 0.014938 B = 0.004649 C = 0.003952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1874.021665 B = 6021.308387 C = 7083.304033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.095 4.095 3 C -0.133 4.133 4 C -0.095 4.095 5 C -0.130 4.130 6 C 0.160 3.840 7 H 0.032 0.968 8 C 0.133 3.867 9 N -0.674 5.674 10 C 0.591 3.409 11 O -0.549 6.549 12 C -0.020 4.020 13 N -0.216 5.216 14 N -0.374 5.374 15 H 0.455 0.545 16 C -0.047 4.047 17 C 0.032 3.968 18 F -0.103 7.103 19 N -0.584 5.584 20 C -0.247 4.247 21 H 0.069 0.931 22 C 0.015 3.985 23 N -0.897 5.897 24 Si 0.889 3.111 25 H -0.288 1.288 26 H -0.293 1.293 27 H -0.280 1.280 28 C 0.188 3.812 29 H 0.030 0.970 30 H 0.044 0.956 31 H 0.066 0.934 32 H 0.047 0.953 33 H 0.050 0.950 34 H 0.041 0.959 35 H 0.044 0.956 36 H 0.052 0.948 37 H 0.066 0.934 38 H 0.050 0.950 39 H 0.069 0.931 40 H 0.058 0.942 41 H 0.422 0.578 42 H 0.194 0.806 43 H 0.252 0.748 44 H 0.085 0.915 45 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.646 -5.950 1.548 7.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.097 4.097 3 C -0.191 4.191 4 C -0.133 4.133 5 C -0.170 4.170 6 C 0.053 3.947 7 H 0.049 0.951 8 C 0.010 3.990 9 N -0.325 5.325 10 C 0.374 3.626 11 O -0.427 6.427 12 C -0.183 4.183 13 N -0.052 5.052 14 N -0.090 5.090 15 H 0.300 0.700 16 C -0.192 4.192 17 C 0.002 3.998 18 F -0.082 7.082 19 N -0.307 5.307 20 C -0.377 4.377 21 H 0.087 0.913 22 C -0.185 4.185 23 N -0.541 5.541 24 Si 0.719 3.281 25 H -0.215 1.215 26 H -0.220 1.220 27 H -0.205 1.205 28 C 0.063 3.937 29 H 0.049 0.951 30 H 0.063 0.937 31 H 0.085 0.915 32 H 0.066 0.934 33 H 0.069 0.931 34 H 0.060 0.940 35 H 0.063 0.937 36 H 0.070 0.930 37 H 0.084 0.916 38 H 0.069 0.931 39 H 0.087 0.913 40 H 0.076 0.924 41 H 0.261 0.739 42 H 0.211 0.789 43 H 0.062 0.938 44 H 0.103 0.897 45 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges 3.722 -5.350 1.709 6.737 hybrid contribution -0.663 -0.779 -1.403 1.736 sum 3.059 -6.129 0.307 6.857 Atomic orbital electron populations 1.21700 0.95147 1.02112 0.99177 1.21246 0.95852 0.94351 0.98223 1.21759 1.00345 0.96541 1.00472 1.21403 0.99580 0.95348 0.96951 1.22007 1.01346 0.96036 0.97571 1.20732 0.96029 0.89232 0.88695 0.95063 1.21367 0.99715 0.91692 0.86266 1.45847 1.45601 1.13285 1.27766 1.16703 0.81495 0.81766 0.82649 1.90777 1.34990 1.68199 1.48688 1.22375 1.02214 0.94319 0.99348 1.73857 1.16252 1.16257 0.98859 1.43079 1.34478 1.09477 1.21935 0.69964 1.22583 1.00714 0.95475 1.00426 1.17212 0.97579 0.89916 0.95081 1.91510 1.66776 1.68586 1.81326 1.44020 1.65430 1.05646 1.15624 1.19146 1.16247 1.17391 0.84887 0.91342 1.24975 0.96460 1.00055 0.96988 1.70005 1.26971 1.38694 1.18422 0.86486 0.81087 0.78599 0.81890 1.21528 1.21974 1.20493 1.20784 0.96010 0.83096 0.93838 0.95098 0.93688 0.91545 0.93361 0.93078 0.94005 0.93680 0.92956 0.91576 0.93096 0.91289 0.92414 0.73934 0.78859 0.93795 0.89696 0.96516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.22 7.99 37.16 0.30 -1.92 16 2 C -0.09 -1.69 0.77 -154.39 -0.12 -1.81 16 3 C -0.13 -2.10 8.48 37.16 0.32 -1.79 16 4 C -0.10 -1.54 4.71 -26.69 -0.13 -1.66 16 5 C -0.13 -2.14 5.03 -26.61 -0.13 -2.28 16 6 C 0.16 3.06 3.00 -67.60 -0.20 2.86 16 7 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 8 C 0.13 2.55 4.43 -4.04 -0.02 2.54 16 9 N -0.67 -13.66 3.85 -61.32 -0.24 -13.90 16 10 C 0.59 12.34 7.82 -12.44 -0.10 12.24 16 11 O -0.55 -12.66 16.67 5.29 0.09 -12.57 16 12 C -0.02 -0.37 7.13 -82.74 -0.59 -0.96 16 13 N -0.22 -3.60 11.91 33.43 0.40 -3.20 16 14 N -0.37 -4.34 6.86 30.64 0.21 -4.13 16 15 H 0.45 3.28 8.96 -190.44 -1.71 1.57 16 16 C -0.05 -0.53 12.06 -16.79 -0.20 -0.73 16 17 C 0.03 0.52 8.03 -39.27 -0.32 0.20 16 18 F -0.10 -1.78 17.03 2.25 0.04 -1.75 16 19 N -0.58 -12.96 2.41 -164.78 -0.40 -13.36 16 20 C -0.25 -6.11 7.01 -15.06 -0.11 -6.21 16 21 H 0.07 1.77 5.85 -52.48 -0.31 1.47 16 22 C 0.01 0.38 4.96 -17.43 -0.09 0.29 16 23 N -0.90 -24.10 11.23 55.49 0.62 -23.48 16 24 Si 0.89 21.47 29.58 -169.99 -5.03 16.44 16 25 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 26 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 27 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 28 C 0.19 4.12 3.95 -3.71 -0.01 4.11 16 29 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.07 1.29 5.97 -51.93 -0.31 0.98 16 32 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 33 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 34 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 37 H 0.07 1.13 6.33 -51.93 -0.33 0.80 16 38 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 39 H 0.07 1.43 7.39 -51.93 -0.38 1.05 16 40 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.42 8.99 7.17 -40.82 -0.29 8.70 16 42 H 0.19 1.23 8.06 -52.48 -0.42 0.80 16 43 H 0.25 6.71 8.31 -40.82 -0.34 6.37 16 44 H 0.08 2.13 6.19 -51.93 -0.32 1.81 16 45 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 LS Contribution 360.04 15.07 5.43 5.43 Total: -1.00 -30.78 360.04 -8.14 -38.92 By element: Atomic # 1 Polarization: 14.60 SS G_CDS: -7.86 Total: 6.74 kcal Atomic # 6 Polarization: 6.27 SS G_CDS: -1.40 Total: 4.87 kcal Atomic # 7 Polarization: -58.68 SS G_CDS: 0.60 Total: -58.08 kcal Atomic # 8 Polarization: -12.66 SS G_CDS: 0.09 Total: -12.57 kcal Atomic # 9 Polarization: -1.78 SS G_CDS: 0.04 Total: -1.75 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.03 Total: 16.44 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -30.78 -8.14 -38.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089691081.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.095 kcal (2) G-P(sol) polarization free energy of solvation -30.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.917 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds