Wall clock time and date at job start Tue Mar 31 2020 14:09:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53006 * 109.49566 * 2 1 4 4 C 1.53039 * 109.49894 * 120.06434 * 2 1 3 5 5 C 1.53042 * 109.53628 * 58.58428 * 4 2 1 6 6 C 1.53194 * 109.31014 * 61.36806 * 5 4 2 7 7 H 1.08996 * 109.58827 * 65.29745 * 6 5 4 8 8 C 1.52999 * 109.58592 * 185.57689 * 6 5 4 9 9 N 1.46507 * 109.47280 * 179.97438 * 8 6 5 10 10 C 1.34772 * 120.00104 * 179.97438 * 9 8 6 11 11 O 1.21584 * 119.99947 * 0.02562 * 10 9 8 12 12 C 1.47614 * 120.00238 * 179.97438 * 10 9 8 13 13 N 1.31879 * 126.45402 * 359.68880 * 12 10 9 14 14 N 1.28466 * 110.15216 * 179.81705 * 13 12 10 15 15 H 0.96998 * 124.93719 * 180.16308 * 14 13 12 16 16 C 1.35731 * 110.13432 * 0.45512 * 14 13 12 17 17 C 1.35539 * 107.11717 * 359.72899 * 16 14 13 18 18 F 1.35100 * 127.24836 * 179.97438 * 17 16 14 19 19 N 1.46926 * 108.77600 * 305.35997 * 6 5 4 20 20 C 1.36929 * 120.63554 * 233.61039 * 19 6 5 21 21 H 1.08004 * 120.00080 * 30.96337 * 20 19 6 22 22 C 1.38813 * 120.00558 * 210.96702 * 20 19 6 23 23 N 1.31624 * 119.99556 * 14.13550 * 22 20 19 24 24 Si 1.86795 * 120.00488 * 194.13433 * 22 20 19 25 25 H 1.48506 * 109.47018 * 89.99847 * 24 22 20 26 26 H 1.48497 * 109.47368 * 209.99640 * 24 22 20 27 27 H 1.48499 * 109.47064 * 330.00357 * 24 22 20 28 28 C 1.46933 * 118.73369 * 53.60972 * 19 6 5 29 29 H 1.08996 * 109.47012 * 299.93364 * 1 2 3 30 30 H 1.08994 * 109.47086 * 59.93345 * 1 2 3 31 31 H 1.08999 * 109.46978 * 179.97438 * 1 2 3 32 32 H 1.09006 * 109.46665 * 180.02562 * 3 2 1 33 33 H 1.08993 * 109.47132 * 300.06387 * 3 2 1 34 34 H 1.09003 * 109.46642 * 60.06595 * 3 2 1 35 35 H 1.08999 * 109.46280 * 298.57053 * 4 2 1 36 36 H 1.08995 * 109.45153 * 178.60048 * 4 2 1 37 37 H 1.08998 * 109.50356 * 301.41531 * 5 4 2 38 38 H 1.08999 * 109.52490 * 181.32987 * 5 4 2 39 39 H 1.09000 * 109.47613 * 59.99271 * 8 6 5 40 40 H 1.09004 * 109.47274 * 299.99349 * 8 6 5 41 41 H 0.96998 * 119.99206 * 0.27539 * 9 8 6 42 42 H 1.08005 * 126.44398 * 179.71966 * 16 14 13 43 43 H 0.97001 * 119.99845 * 179.97438 * 23 22 20 44 44 H 1.09002 * 109.58221 * 186.60262 * 28 19 6 45 45 H 1.08995 * 109.70078 * 66.25216 * 28 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0407 1.4423 0.0000 4 6 2.0409 -0.7227 1.2485 5 6 1.5030 -2.1554 1.2666 6 6 2.0141 -2.9040 0.0316 7 1 3.0977 -3.0065 0.0888 8 6 1.3703 -4.2905 -0.0306 9 7 1.8602 -5.0039 -1.2127 10 6 1.4271 -6.2532 -1.4735 11 8 0.6294 -6.7881 -0.7279 12 6 1.9203 -6.9718 -2.6649 13 7 2.7759 -6.5139 -3.5578 14 7 2.9889 -7.4009 -4.4623 15 1 3.5839 -7.2896 -5.2202 16 6 2.2554 -8.5140 -4.2070 17 6 1.5591 -8.2804 -3.0678 18 9 0.7008 -9.1192 -2.4475 19 7 1.6515 -2.1385 -1.1690 20 6 0.9636 -2.7318 -2.1935 21 1 0.2675 -3.5309 -1.9851 22 6 1.1607 -2.3064 -3.5000 23 7 2.1909 -1.5422 -3.7949 24 14 -0.0361 -2.8185 -4.8398 25 1 -1.1258 -1.8146 -4.9402 26 1 0.6804 -2.9029 -6.1377 27 1 -0.6144 -4.1450 -4.5063 28 6 2.0413 -0.7241 -1.2493 29 1 -0.3633 0.5128 0.8905 30 1 -0.3633 0.5148 -0.8893 31 1 -0.3633 -1.0277 -0.0005 32 1 3.1307 1.4418 -0.0005 33 1 1.6767 1.9566 -0.8894 34 1 1.6785 1.9559 0.8906 35 1 1.6988 -0.1953 2.1390 36 1 3.1305 -0.7440 1.2353 37 1 0.4133 -2.1352 1.2547 38 1 1.8476 -2.6625 2.1678 39 1 0.2871 -4.1859 -0.0927 40 1 1.6301 -4.8523 0.8667 41 1 2.4996 -4.5786 -1.8053 42 1 2.2310 -9.4163 -4.8001 43 1 2.3289 -1.2452 -4.7080 44 1 1.6007 -0.2737 -2.1388 45 1 3.1272 -0.6445 -1.2992 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001089691081.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:09:30 Heat of formation + Delta-G solvation = -8.063557 kcal Electronic energy + Delta-G solvation = -29173.220104 eV Core-core repulsion = 25141.589727 eV Total energy + Delta-G solvation = -4031.630377 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.170 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -49.70134 -43.67628 -40.74814 -39.79801 -36.62479 -34.98956 -33.83890 -32.73349 -31.71683 -31.57061 -28.97280 -27.99171 -27.29570 -25.86889 -24.32852 -23.67567 -22.78527 -21.70231 -21.09780 -19.88292 -19.43567 -18.55885 -17.73520 -17.50224 -17.15687 -16.95943 -16.80688 -16.08251 -16.03166 -15.72135 -15.50357 -15.33090 -15.19578 -14.94926 -14.69659 -14.51806 -13.94352 -13.77046 -13.52856 -13.13609 -13.00556 -12.84460 -12.73390 -12.50492 -12.48447 -12.23045 -12.12417 -12.04218 -11.85630 -11.63929 -11.26313 -11.21948 -10.91157 -10.84286 -10.68265 -10.46038 -10.05178 -9.82960 -8.48312 -7.78610 -5.23096 0.37171 0.82156 1.36570 1.41335 1.47455 1.77011 2.18857 2.34349 2.50802 3.11286 3.36735 3.57416 3.62534 3.85192 4.00635 4.05340 4.06894 4.23036 4.34669 4.40075 4.46186 4.54178 4.70031 4.76276 4.89270 4.95185 4.98010 5.08112 5.12598 5.16390 5.18588 5.21952 5.28497 5.42580 5.48487 5.55298 5.59970 5.65881 5.75322 5.85186 5.92223 5.96243 6.47851 6.50527 6.74785 7.21692 7.25917 7.94238 8.47130 9.25461 Molecular weight = 324.17amu Principal moments of inertia in cm(-1) A = 0.014938 B = 0.004649 C = 0.003952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1874.021665 B = 6021.308387 C = 7083.304033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.092 4.092 3 C -0.128 4.128 4 C -0.090 4.090 5 C -0.124 4.124 6 C 0.160 3.840 7 H 0.030 0.970 8 C 0.136 3.864 9 N -0.676 5.676 10 C 0.585 3.415 11 O -0.581 6.581 12 C -0.057 4.057 13 N -0.243 5.243 14 N -0.349 5.349 15 H 0.475 0.525 16 C 0.007 3.993 17 C -0.010 4.010 18 F -0.117 7.117 19 N -0.594 5.594 20 C -0.226 4.226 21 H 0.055 0.945 22 C -0.024 4.024 23 N -0.919 5.919 24 Si 0.930 3.070 25 H -0.293 1.293 26 H -0.292 1.292 27 H -0.289 1.289 28 C 0.198 3.802 29 H 0.059 0.941 30 H 0.028 0.972 31 H 0.046 0.954 32 H 0.050 0.950 33 H 0.040 0.960 34 H 0.068 0.932 35 H 0.074 0.926 36 H 0.054 0.946 37 H 0.061 0.939 38 H 0.080 0.920 39 H 0.049 0.951 40 H 0.077 0.923 41 H 0.416 0.584 42 H 0.254 0.746 43 H 0.246 0.754 44 H 0.048 0.952 45 H -0.006 1.006 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.316 -6.495 2.031 8.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.093 4.093 3 C -0.186 4.186 4 C -0.128 4.128 5 C -0.163 4.163 6 C 0.054 3.946 7 H 0.048 0.952 8 C 0.013 3.987 9 N -0.325 5.325 10 C 0.370 3.630 11 O -0.461 6.461 12 C -0.217 4.217 13 N -0.081 5.081 14 N -0.068 5.068 15 H 0.326 0.674 16 C -0.139 4.139 17 C -0.040 4.040 18 F -0.096 7.096 19 N -0.317 5.317 20 C -0.357 4.357 21 H 0.073 0.927 22 C -0.221 4.221 23 N -0.566 5.566 24 Si 0.762 3.238 25 H -0.221 1.221 26 H -0.219 1.219 27 H -0.215 1.215 28 C 0.072 3.928 29 H 0.078 0.922 30 H 0.047 0.953 31 H 0.065 0.935 32 H 0.069 0.931 33 H 0.060 0.940 34 H 0.087 0.913 35 H 0.093 0.907 36 H 0.073 0.927 37 H 0.080 0.920 38 H 0.099 0.901 39 H 0.068 0.932 40 H 0.095 0.905 41 H 0.253 0.747 42 H 0.270 0.730 43 H 0.055 0.945 44 H 0.066 0.934 45 H 0.012 0.988 Dipole moment (debyes) X Y Z Total from point charges 4.411 -5.875 2.197 7.668 hybrid contribution -0.831 -0.682 -1.590 1.919 sum 3.580 -6.557 0.607 7.496 Atomic orbital electron populations 1.21620 0.95054 1.00975 0.99799 1.21151 0.95817 0.95448 0.96926 1.21706 1.00540 0.95007 1.01346 1.21384 0.99674 0.94876 0.96867 1.21950 1.01031 0.96332 0.96995 1.20877 0.95921 0.89163 0.88614 0.95202 1.21388 0.98461 0.92071 0.86790 1.45885 1.45340 1.13375 1.27887 1.17110 0.80934 0.81721 0.83251 1.90731 1.36397 1.68871 1.50096 1.22163 1.04212 0.95738 0.99584 1.73776 1.16626 1.17853 0.99804 1.43274 1.33646 1.08742 1.21173 0.67419 1.23349 0.96618 0.95976 0.97941 1.17603 0.99593 0.89493 0.97266 1.91463 1.67476 1.68693 1.81935 1.44155 1.65257 1.06281 1.16028 1.19069 1.15129 1.16041 0.85452 0.92749 1.25320 0.97539 1.01063 0.98177 1.70101 1.28171 1.40221 1.18059 0.85844 0.79777 0.77460 0.80755 1.22070 1.21882 1.21544 1.20564 0.94314 0.83188 0.94707 0.92158 0.95319 0.93533 0.93053 0.94034 0.91290 0.90746 0.92749 0.92032 0.90139 0.93235 0.90532 0.74650 0.73001 0.94455 0.93361 0.98792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.05 7.99 71.98 0.57 -3.47 16 2 C -0.09 -3.16 0.77 -52.10 -0.04 -3.20 16 3 C -0.13 -3.80 8.48 71.98 0.61 -3.19 16 4 C -0.09 -2.67 4.71 30.62 0.14 -2.52 16 5 C -0.12 -3.82 5.03 30.67 0.15 -3.67 16 6 C 0.16 6.09 3.00 44.98 0.14 6.22 16 7 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 8 C 0.14 5.30 4.43 86.38 0.38 5.68 16 9 N -0.68 -28.26 3.85 -466.18 -1.79 -30.06 16 10 C 0.59 25.29 7.82 86.72 0.68 25.96 16 11 O -0.58 -27.78 16.67 -3.98 -0.07 -27.84 16 12 C -0.06 -2.12 7.13 42.44 0.30 -1.81 16 13 N -0.24 -7.97 11.91 -48.15 -0.57 -8.54 16 14 N -0.35 -7.20 6.86 -56.99 -0.39 -7.59 16 15 H 0.48 5.25 8.96 -220.00 -1.97 3.28 16 16 C 0.01 0.13 12.06 83.47 1.01 1.14 16 17 C -0.01 -0.30 8.03 22.47 0.18 -0.12 16 18 F -0.12 -4.03 17.03 44.97 0.77 -3.26 16 19 N -0.59 -26.86 2.41 -675.23 -1.63 -28.49 16 20 C -0.23 -11.51 7.01 84.04 0.59 -10.92 16 21 H 0.05 2.93 5.85 -2.91 -0.02 2.91 16 22 C -0.02 -1.30 4.96 84.86 0.42 -0.87 16 23 N -0.92 -50.97 11.23 21.65 0.24 -50.73 16 24 Si 0.93 45.28 29.58 68.60 2.03 47.31 16 25 H -0.29 -14.36 7.11 99.48 0.71 -13.65 16 26 H -0.29 -14.07 7.11 99.48 0.71 -13.36 16 27 H -0.29 -14.42 7.11 99.48 0.71 -13.71 16 28 C 0.20 8.82 3.95 86.36 0.34 9.16 16 29 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 30 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.05 1.78 5.97 -2.39 -0.01 1.76 16 32 H 0.05 1.48 8.14 -2.38 -0.02 1.46 16 33 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 35 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 36 H 0.05 1.60 8.14 -2.39 -0.02 1.59 16 37 H 0.06 1.99 6.33 -2.39 -0.02 1.98 16 38 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 39 H 0.05 2.11 7.39 -2.39 -0.02 2.09 16 40 H 0.08 2.67 8.14 -2.39 -0.02 2.65 16 41 H 0.42 18.37 7.17 -92.71 -0.66 17.71 16 42 H 0.25 1.62 8.06 -2.91 -0.02 1.60 16 43 H 0.25 13.50 8.31 -92.71 -0.77 12.73 16 44 H 0.05 2.51 6.19 -2.39 -0.01 2.49 16 45 H -0.01 -0.29 8.14 -2.39 -0.02 -0.31 16 Total: -1.00 -71.40 360.04 2.46 -68.94 By element: Atomic # 1 Polarization: 23.48 SS G_CDS: -1.60 Total: 21.88 kcal Atomic # 6 Polarization: 12.90 SS G_CDS: 5.48 Total: 18.38 kcal Atomic # 7 Polarization: -121.27 SS G_CDS: -4.14 Total: -125.41 kcal Atomic # 8 Polarization: -27.78 SS G_CDS: -0.07 Total: -27.84 kcal Atomic # 9 Polarization: -4.03 SS G_CDS: 0.77 Total: -3.26 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.31 kcal Total: -71.40 2.46 -68.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089691081.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.877 kcal (2) G-P(sol) polarization free energy of solvation -71.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds