Wall clock time and date at job start Tue Mar 31 2020 14:00:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86804 * 120.00036 * 2 1 4 4 H 1.48502 * 109.46997 * 270.00267 * 3 2 1 5 5 H 1.48500 * 109.47050 * 30.00145 * 3 2 1 6 6 H 1.48495 * 109.47108 * 150.00368 * 3 2 1 7 7 C 1.38812 * 120.00146 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00283 * 179.97438 * 7 2 1 9 9 N 1.36934 * 120.00093 * 0.02562 * 7 2 1 10 10 C 1.46499 * 120.00406 * 180.02562 * 9 7 2 11 11 C 1.53780 * 113.61718 * 204.99778 * 10 9 7 12 12 C 1.53778 * 87.07960 * 220.01438 * 11 10 9 13 13 C 1.53009 * 113.61300 * 139.97851 * 12 11 10 14 14 N 1.46502 * 109.46924 * 174.99818 * 13 12 11 15 15 C 1.34773 * 119.99745 * 179.97438 * 14 13 12 16 16 O 1.21282 * 120.00244 * 0.02562 * 15 14 13 17 17 C 1.50699 * 119.99891 * 179.97438 * 15 14 13 18 18 H 1.08994 * 110.32102 * 302.78985 * 17 15 14 19 19 O 1.43805 * 110.44871 * 180.50928 * 17 15 14 20 20 C 1.42411 * 109.69144 * 216.80519 * 19 17 15 21 21 C 1.53484 * 107.58989 * 0.35966 * 20 19 17 22 22 H 1.09005 * 109.53262 * 267.50304 * 21 20 19 23 23 C 1.51101 * 112.66552 * 145.29553 * 21 20 19 24 24 O 1.42706 * 111.54757 * 293.13114 * 23 21 20 25 25 C 1.41616 * 113.63191 * 300.59844 * 24 23 21 26 26 C 1.52747 * 108.56350 * 64.60859 * 25 24 23 27 27 C 1.53103 * 110.51138 * 300.39584 * 26 25 24 28 28 H 1.09006 * 112.61892 * 283.67063 * 27 26 25 29 29 C 1.53774 * 113.61803 * 107.49371 * 10 9 7 30 30 H 0.96997 * 120.00152 * 359.97438 * 1 2 3 31 31 H 0.97005 * 119.99934 * 359.97438 * 9 7 2 32 32 H 1.09003 * 112.90184 * 336.24560 * 10 9 7 33 33 H 1.09002 * 113.61820 * 105.46383 * 11 10 9 34 34 H 1.08999 * 113.68751 * 334.57261 * 11 10 9 35 35 H 1.08997 * 113.61715 * 270.79208 * 12 11 10 36 36 H 1.08996 * 109.46912 * 54.99924 * 13 12 11 37 37 H 1.09002 * 109.46956 * 294.99605 * 13 12 11 38 38 H 0.97003 * 120.00216 * 0.02562 * 14 13 12 39 39 H 1.08998 * 109.14901 * 241.07264 * 20 19 17 40 40 H 1.08995 * 110.16424 * 120.21992 * 20 19 17 41 41 H 1.09002 * 109.05352 * 53.64386 * 23 21 20 42 42 H 1.09000 * 109.05432 * 172.61936 * 23 21 20 43 43 H 1.09002 * 109.24435 * 305.02781 * 25 24 23 44 44 H 1.09000 * 109.95879 * 184.60815 * 25 24 23 45 45 H 1.08998 * 109.26824 * 180.12619 * 26 25 24 46 46 H 1.08998 * 109.23600 * 60.63899 * 26 25 24 47 47 H 1.09003 * 113.61194 * 25.43857 * 29 10 9 48 48 H 1.08994 * 113.61959 * 254.53202 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4402 0.6999 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6568 0.0017 11 6 1.2606 -4.8291 -0.5938 12 6 1.8477 -5.6973 0.5314 13 6 0.8442 -6.6847 1.1307 14 7 1.5248 -7.5422 2.1042 15 6 0.8340 -8.4936 2.7631 16 8 -0.3508 -8.6402 2.5497 17 6 1.5342 -9.3761 3.7641 18 1 2.3673 -9.8968 3.2921 19 8 0.6114 -10.3210 4.3329 20 6 0.9171 -10.5212 5.7094 21 6 2.1207 -9.6322 6.0512 22 1 3.0419 -10.2005 5.9220 23 6 2.0582 -9.0832 7.4576 24 8 0.9784 -8.1634 7.6136 25 6 1.0535 -7.0472 6.7453 26 6 0.9191 -7.5408 5.3061 27 6 2.0374 -8.5318 4.9722 28 1 2.9940 -8.0402 4.7947 29 6 1.9983 -4.4015 1.3457 30 1 -0.4850 0.8400 0.0004 31 1 0.3556 -2.3881 0.0005 32 1 3.0664 -3.5648 -0.4021 33 1 1.5928 -5.1219 -1.5898 34 1 0.1801 -4.7017 -0.5285 35 1 2.7977 -6.1645 0.2721 36 1 0.4220 -7.3005 0.3367 37 1 0.0452 -6.1341 1.6275 38 1 2.4724 -7.4247 2.2752 39 1 1.1708 -11.5690 5.8705 40 1 0.0632 -10.2454 6.3279 41 1 1.9259 -9.9092 8.1565 42 1 2.9951 -8.5736 7.6826 43 1 2.0169 -6.5545 6.8761 44 1 0.2493 -6.3464 6.9697 45 1 0.9776 -6.6902 4.6271 46 1 -0.0458 -8.0329 5.1838 47 1 1.1195 -4.1560 1.9421 48 1 2.9259 -4.3492 1.9156 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001091159757.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:00:39 Heat of formation + Delta-G solvation = -96.740905 kcal Electronic energy + Delta-G solvation = -28210.609213 eV Core-core repulsion = 24266.301052 eV Total energy + Delta-G solvation = -3944.308162 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.55109 -39.51631 -38.52012 -37.79768 -34.76728 -33.64177 -33.18851 -32.36290 -30.42314 -29.46097 -27.14520 -25.91405 -25.13157 -24.21949 -23.85400 -23.15222 -21.10546 -20.38929 -20.04445 -19.07112 -17.57413 -17.30479 -17.05420 -16.70860 -16.34552 -16.03797 -15.75726 -15.49481 -15.00312 -14.92274 -14.63454 -14.23148 -13.75430 -13.61591 -13.47563 -13.31996 -13.02313 -12.97769 -12.66897 -12.47047 -12.05098 -11.92894 -11.84619 -11.46437 -11.42946 -11.26358 -11.09564 -10.86866 -10.63401 -10.55362 -10.30748 -10.20410 -10.13864 -9.89510 -9.86177 -9.65010 -9.45065 -9.07443 -8.89802 -6.99361 -5.80913 -3.09998 2.46959 2.76122 3.40436 3.45500 3.47472 3.48615 3.58451 3.72063 4.12698 4.27740 4.48805 4.54488 4.55649 4.65210 4.79567 4.80879 4.92841 4.94093 4.97362 5.08486 5.12397 5.15710 5.19477 5.21817 5.37154 5.43149 5.43745 5.46568 5.57807 5.69287 5.79068 5.80903 5.89784 5.93483 6.05979 6.20810 6.27753 6.31988 6.39379 6.53006 6.56321 6.78779 6.82208 7.07367 7.39339 7.66056 8.12781 8.37567 9.48611 10.06806 10.40866 11.41435 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.017374 B = 0.002504 C = 0.002294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1611.256853 B =11179.025359 C =12201.274603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.013 4.013 3 Si 0.907 3.093 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.245 4.245 8 H 0.071 0.929 9 N -0.713 5.713 10 C 0.166 3.834 11 C -0.143 4.143 12 C -0.127 4.127 13 C 0.133 3.867 14 N -0.723 5.723 15 C 0.513 3.487 16 O -0.521 6.521 17 C 0.065 3.935 18 H 0.095 0.905 19 O -0.348 6.348 20 C 0.057 3.943 21 C -0.155 4.155 22 H 0.094 0.906 23 C 0.073 3.927 24 O -0.374 6.374 25 C 0.064 3.936 26 C -0.162 4.162 27 C -0.107 4.107 28 H 0.109 0.891 29 C -0.160 4.160 30 H 0.256 0.744 31 H 0.385 0.615 32 H 0.075 0.925 33 H 0.061 0.939 34 H 0.081 0.919 35 H 0.088 0.912 36 H 0.065 0.935 37 H 0.070 0.930 38 H 0.399 0.601 39 H 0.072 0.928 40 H 0.079 0.921 41 H 0.098 0.902 42 H 0.056 0.944 43 H 0.052 0.948 44 H 0.100 0.900 45 H 0.082 0.918 46 H 0.085 0.915 47 H 0.078 0.922 48 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.140 -22.081 12.807 26.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.209 4.209 3 Si 0.738 3.262 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.376 4.376 8 H 0.089 0.911 9 N -0.351 5.351 10 C 0.054 3.946 11 C -0.182 4.182 12 C -0.146 4.146 13 C 0.010 3.990 14 N -0.376 5.376 15 C 0.298 3.702 16 O -0.395 6.395 17 C 0.004 3.996 18 H 0.113 0.887 19 O -0.266 6.266 20 C -0.019 4.019 21 C -0.174 4.174 22 H 0.112 0.888 23 C -0.004 4.004 24 O -0.292 6.292 25 C -0.013 4.013 26 C -0.200 4.200 27 C -0.125 4.125 28 H 0.127 0.873 29 C -0.202 4.202 30 H 0.066 0.934 31 H 0.220 0.780 32 H 0.093 0.907 33 H 0.080 0.920 34 H 0.099 0.901 35 H 0.106 0.894 36 H 0.083 0.917 37 H 0.088 0.912 38 H 0.233 0.767 39 H 0.090 0.910 40 H 0.097 0.903 41 H 0.116 0.884 42 H 0.075 0.925 43 H 0.070 0.930 44 H 0.119 0.881 45 H 0.101 0.899 46 H 0.103 0.897 47 H 0.096 0.904 48 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 7.030 -22.133 12.656 26.448 hybrid contribution 1.068 1.017 -0.077 1.477 sum 8.099 -21.116 12.579 25.878 Atomic orbital electron populations 1.69657 1.05145 1.25791 1.57364 1.24773 0.95518 0.97799 1.02804 0.86196 0.78649 0.83825 0.77541 1.21674 1.21747 1.20749 1.19291 0.91039 0.84243 1.43035 0.91124 1.42416 1.05778 0.99881 1.86986 1.21509 0.95300 0.85057 0.92744 1.23453 1.01082 0.97002 0.96706 1.22643 0.98359 0.94364 0.99251 1.21454 0.95300 0.91478 0.90725 1.45974 1.13194 1.35441 1.43006 1.20259 0.87640 0.80866 0.81470 1.90743 1.15161 1.69131 1.64490 1.23072 0.92064 0.90350 0.94105 0.88699 1.88451 1.54321 1.60903 1.22883 1.22897 0.97252 0.98740 0.83052 1.22645 1.00535 0.97106 0.97071 0.88751 1.21930 0.90697 0.93303 0.94445 1.87745 1.47347 1.34266 1.59886 1.22322 1.02289 0.88270 0.88430 1.22305 0.99477 0.99769 0.98460 1.22847 1.00185 0.96168 0.93334 0.87308 1.23948 1.01274 0.94943 0.99990 0.93410 0.78048 0.90696 0.91992 0.90088 0.89378 0.91697 0.91163 0.76737 0.91014 0.90327 0.88385 0.92528 0.92954 0.88147 0.89927 0.89660 0.90358 0.92830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.94 13.06 55.49 0.72 -27.22 16 2 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 3 Si 0.91 22.06 29.55 -169.99 -5.02 17.04 16 4 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.24 -6.67 9.97 -15.06 -0.15 -6.82 16 8 H 0.07 1.86 7.83 -52.49 -0.41 1.44 16 9 N -0.71 -17.46 5.40 -52.64 -0.28 -17.75 16 10 C 0.17 3.10 4.48 -67.12 -0.30 2.80 16 11 C -0.14 -2.20 7.39 -25.92 -0.19 -2.39 16 12 C -0.13 -1.59 3.76 -89.80 -0.34 -1.93 16 13 C 0.13 1.68 5.51 -4.04 -0.02 1.65 16 14 N -0.72 -7.57 5.49 -60.29 -0.33 -7.90 16 15 C 0.51 6.47 5.39 -10.99 -0.06 6.41 16 16 O -0.52 -9.13 16.55 -13.69 -0.23 -9.35 16 17 C 0.07 0.63 3.54 -26.42 -0.09 0.54 16 18 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 19 O -0.35 -4.20 10.24 -54.48 -0.56 -4.76 16 20 C 0.06 0.49 6.75 37.41 0.25 0.74 16 21 C -0.15 -0.98 2.96 -90.62 -0.27 -1.25 16 22 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 23 C 0.07 0.46 6.14 36.20 0.22 0.68 16 24 O -0.37 -3.49 10.45 -35.18 -0.37 -3.86 16 25 C 0.06 0.55 6.80 37.03 0.25 0.80 16 26 C -0.16 -1.56 4.11 -26.81 -0.11 -1.67 16 27 C -0.11 -0.79 3.60 -88.40 -0.32 -1.11 16 28 H 0.11 0.57 8.14 -51.93 -0.42 0.14 16 29 C -0.16 -2.50 7.43 -25.92 -0.19 -2.69 16 30 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 31 H 0.39 10.11 7.93 -40.82 -0.32 9.79 16 32 H 0.08 1.39 8.10 -51.93 -0.42 0.97 16 33 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 34 H 0.08 1.33 8.08 -51.93 -0.42 0.91 16 35 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 37 H 0.07 1.02 7.84 -51.93 -0.41 0.61 16 38 H 0.40 3.02 8.47 -40.82 -0.35 2.67 16 39 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.08 0.75 7.71 -51.93 -0.40 0.35 16 41 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 43 H 0.05 0.39 8.12 -51.93 -0.42 -0.04 16 44 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 45 H 0.08 0.85 7.72 -51.93 -0.40 0.44 16 46 H 0.08 1.08 7.00 -51.93 -0.36 0.71 16 47 H 0.08 1.36 7.90 -51.93 -0.41 0.95 16 48 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 LS Contribution 379.96 15.07 5.73 5.73 Total: -1.00 -34.03 379.96 -9.86 -43.89 By element: Atomic # 1 Polarization: 16.98 SS G_CDS: -8.11 Total: 8.87 kcal Atomic # 6 Polarization: -3.27 SS G_CDS: -1.41 Total: -4.68 kcal Atomic # 7 Polarization: -52.97 SS G_CDS: 0.11 Total: -52.86 kcal Atomic # 8 Polarization: -16.82 SS G_CDS: -1.15 Total: -17.98 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -34.03 -9.86 -43.89 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091159757.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.852 kcal (2) G-P(sol) polarization free energy of solvation -34.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds