Wall clock time and date at job start Tue Mar 31 2020 14:00:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86804 * 120.00036 * 2 1 4 4 H 1.48502 * 109.46997 * 270.00267 * 3 2 1 5 5 H 1.48500 * 109.47050 * 30.00145 * 3 2 1 6 6 H 1.48495 * 109.47108 * 150.00368 * 3 2 1 7 7 C 1.38812 * 120.00146 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00283 * 179.97438 * 7 2 1 9 9 N 1.36934 * 120.00093 * 0.02562 * 7 2 1 10 10 C 1.46499 * 120.00406 * 180.02562 * 9 7 2 11 11 C 1.53780 * 113.61718 * 204.99778 * 10 9 7 12 12 C 1.53778 * 87.07960 * 220.01438 * 11 10 9 13 13 C 1.53009 * 113.61300 * 139.97851 * 12 11 10 14 14 N 1.46502 * 109.46924 * 174.99818 * 13 12 11 15 15 C 1.34773 * 119.99745 * 179.97438 * 14 13 12 16 16 O 1.21282 * 120.00244 * 0.02562 * 15 14 13 17 17 C 1.50699 * 119.99891 * 179.97438 * 15 14 13 18 18 H 1.08994 * 110.32102 * 302.78985 * 17 15 14 19 19 O 1.43805 * 110.44871 * 180.50928 * 17 15 14 20 20 C 1.42411 * 109.69144 * 216.80519 * 19 17 15 21 21 C 1.53484 * 107.58989 * 0.35966 * 20 19 17 22 22 H 1.09005 * 109.53262 * 267.50304 * 21 20 19 23 23 C 1.51101 * 112.66552 * 145.29553 * 21 20 19 24 24 O 1.42706 * 111.54757 * 293.13114 * 23 21 20 25 25 C 1.41616 * 113.63191 * 300.59844 * 24 23 21 26 26 C 1.52747 * 108.56350 * 64.60859 * 25 24 23 27 27 C 1.53103 * 110.51138 * 300.39584 * 26 25 24 28 28 H 1.09006 * 112.61892 * 283.67063 * 27 26 25 29 29 C 1.53774 * 113.61803 * 107.49371 * 10 9 7 30 30 H 0.96997 * 120.00152 * 359.97438 * 1 2 3 31 31 H 0.97005 * 119.99934 * 359.97438 * 9 7 2 32 32 H 1.09003 * 112.90184 * 336.24560 * 10 9 7 33 33 H 1.09002 * 113.61820 * 105.46383 * 11 10 9 34 34 H 1.08999 * 113.68751 * 334.57261 * 11 10 9 35 35 H 1.08997 * 113.61715 * 270.79208 * 12 11 10 36 36 H 1.08996 * 109.46912 * 54.99924 * 13 12 11 37 37 H 1.09002 * 109.46956 * 294.99605 * 13 12 11 38 38 H 0.97003 * 120.00216 * 0.02562 * 14 13 12 39 39 H 1.08998 * 109.14901 * 241.07264 * 20 19 17 40 40 H 1.08995 * 110.16424 * 120.21992 * 20 19 17 41 41 H 1.09002 * 109.05352 * 53.64386 * 23 21 20 42 42 H 1.09000 * 109.05432 * 172.61936 * 23 21 20 43 43 H 1.09002 * 109.24435 * 305.02781 * 25 24 23 44 44 H 1.09000 * 109.95879 * 184.60815 * 25 24 23 45 45 H 1.08998 * 109.26824 * 180.12619 * 26 25 24 46 46 H 1.08998 * 109.23600 * 60.63899 * 26 25 24 47 47 H 1.09003 * 113.61194 * 25.43857 * 29 10 9 48 48 H 1.08994 * 113.61959 * 254.53202 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4402 0.6999 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6568 0.0017 11 6 1.2606 -4.8291 -0.5938 12 6 1.8477 -5.6973 0.5314 13 6 0.8442 -6.6847 1.1307 14 7 1.5248 -7.5422 2.1042 15 6 0.8340 -8.4936 2.7631 16 8 -0.3508 -8.6402 2.5497 17 6 1.5342 -9.3761 3.7641 18 1 2.3673 -9.8968 3.2921 19 8 0.6114 -10.3210 4.3329 20 6 0.9171 -10.5212 5.7094 21 6 2.1207 -9.6322 6.0512 22 1 3.0419 -10.2005 5.9220 23 6 2.0582 -9.0832 7.4576 24 8 0.9784 -8.1634 7.6136 25 6 1.0535 -7.0472 6.7453 26 6 0.9191 -7.5408 5.3061 27 6 2.0374 -8.5318 4.9722 28 1 2.9940 -8.0402 4.7947 29 6 1.9983 -4.4015 1.3457 30 1 -0.4850 0.8400 0.0004 31 1 0.3556 -2.3881 0.0005 32 1 3.0664 -3.5648 -0.4021 33 1 1.5928 -5.1219 -1.5898 34 1 0.1801 -4.7017 -0.5285 35 1 2.7977 -6.1645 0.2721 36 1 0.4220 -7.3005 0.3367 37 1 0.0452 -6.1341 1.6275 38 1 2.4724 -7.4247 2.2752 39 1 1.1708 -11.5690 5.8705 40 1 0.0632 -10.2454 6.3279 41 1 1.9259 -9.9092 8.1565 42 1 2.9951 -8.5736 7.6826 43 1 2.0169 -6.5545 6.8761 44 1 0.2493 -6.3464 6.9697 45 1 0.9776 -6.6902 4.6271 46 1 -0.0458 -8.0329 5.1838 47 1 1.1195 -4.1560 1.9421 48 1 2.9259 -4.3492 1.9156 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001091159757.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:00:38 Heat of formation + Delta-G solvation = -121.669284 kcal Electronic energy + Delta-G solvation = -28211.690189 eV Core-core repulsion = 24266.301052 eV Total energy + Delta-G solvation = -3945.389137 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.26425 -40.54267 -39.68279 -38.59615 -36.07760 -35.10626 -34.16640 -32.98233 -32.18806 -30.40616 -28.30588 -26.50244 -26.44509 -25.85549 -24.70461 -24.02513 -22.41832 -21.40061 -20.65276 -20.40261 -19.04937 -18.37912 -17.97635 -17.40794 -17.20313 -16.98458 -16.56937 -16.37832 -16.33084 -16.04646 -15.75940 -15.52111 -15.14023 -14.84113 -14.41545 -14.39169 -14.14515 -13.67023 -13.47328 -13.32366 -13.23017 -13.16754 -12.99987 -12.91719 -12.66690 -12.62956 -12.19805 -12.13116 -12.06543 -11.75966 -11.56403 -11.52422 -11.21522 -11.10249 -10.97751 -10.80903 -10.55409 -10.42551 -10.10500 -8.96950 -7.93862 -5.22208 1.47794 1.49456 1.52285 1.57774 1.89539 2.57327 2.88018 2.94430 3.13916 3.37874 3.46890 3.61077 3.73009 3.75975 3.87235 3.93076 3.97234 4.01108 4.17325 4.24728 4.26851 4.35489 4.36596 4.43410 4.48334 4.55140 4.59993 4.64403 4.69782 4.75135 4.77155 4.82679 4.97551 4.98459 5.00040 5.05586 5.08622 5.20069 5.23686 5.35357 5.42857 5.53722 5.74810 5.86354 6.26584 6.28424 6.54706 7.22182 7.33779 8.12562 8.33845 9.29831 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.017374 B = 0.002504 C = 0.002294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1611.256853 B =11179.025359 C =12201.274603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.974 5.974 2 C -0.081 4.081 3 Si 0.973 3.027 4 H -0.288 1.288 5 H -0.299 1.299 6 H -0.266 1.266 7 C -0.240 4.240 8 H 0.081 0.919 9 N -0.731 5.731 10 C 0.143 3.857 11 C -0.140 4.140 12 C -0.092 4.092 13 C 0.139 3.861 14 N -0.705 5.705 15 C 0.509 3.491 16 O -0.581 6.581 17 C 0.065 3.935 18 H 0.132 0.868 19 O -0.385 6.385 20 C 0.051 3.949 21 C -0.144 4.144 22 H 0.130 0.870 23 C 0.066 3.934 24 O -0.399 6.399 25 C 0.065 3.935 26 C -0.158 4.158 27 C -0.098 4.098 28 H 0.146 0.854 29 C -0.151 4.151 30 H 0.250 0.750 31 H 0.371 0.629 32 H 0.083 0.917 33 H 0.078 0.922 34 H 0.063 0.937 35 H 0.126 0.874 36 H 0.061 0.939 37 H 0.043 0.957 38 H 0.418 0.582 39 H 0.092 0.908 40 H 0.055 0.945 41 H 0.112 0.888 42 H 0.079 0.921 43 H 0.073 0.927 44 H 0.089 0.911 45 H 0.071 0.929 46 H 0.043 0.957 47 H 0.053 0.947 48 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.322 -23.596 13.523 29.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.625 5.625 2 C -0.273 4.273 3 Si 0.802 3.198 4 H -0.215 1.215 5 H -0.226 1.226 6 H -0.190 1.190 7 C -0.372 4.372 8 H 0.099 0.901 9 N -0.368 5.368 10 C 0.034 3.966 11 C -0.180 4.180 12 C -0.111 4.111 13 C 0.016 3.984 14 N -0.359 5.359 15 C 0.296 3.704 16 O -0.460 6.460 17 C 0.005 3.995 18 H 0.149 0.851 19 O -0.304 6.304 20 C -0.025 4.025 21 C -0.162 4.162 22 H 0.148 0.852 23 C -0.011 4.011 24 O -0.317 6.317 25 C -0.012 4.012 26 C -0.196 4.196 27 C -0.117 4.117 28 H 0.164 0.836 29 C -0.191 4.191 30 H 0.058 0.942 31 H 0.202 0.798 32 H 0.101 0.899 33 H 0.096 0.904 34 H 0.081 0.919 35 H 0.144 0.856 36 H 0.079 0.921 37 H 0.061 0.939 38 H 0.256 0.744 39 H 0.110 0.890 40 H 0.073 0.927 41 H 0.130 0.870 42 H 0.097 0.903 43 H 0.092 0.908 44 H 0.107 0.893 45 H 0.089 0.911 46 H 0.062 0.938 47 H 0.072 0.928 48 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 11.312 -23.695 13.386 29.472 hybrid contribution -0.253 1.392 -0.298 1.446 sum 11.060 -22.303 13.088 28.126 Atomic orbital electron populations 1.69826 1.06784 1.25980 1.59868 1.25602 0.96334 1.01287 1.04057 0.85146 0.77795 0.79507 0.77377 1.21516 1.22613 1.19039 1.19738 0.91629 0.85315 1.40496 0.90136 1.42658 1.05342 1.01325 1.87514 1.21969 0.95615 0.83719 0.95340 1.23350 0.99821 0.96193 0.98596 1.22469 0.99394 0.92871 0.96410 1.21209 0.94914 0.91469 0.90856 1.45756 1.13957 1.34257 1.41890 1.20966 0.87037 0.80923 0.81461 1.90717 1.17923 1.70904 1.66454 1.23269 0.91918 0.90204 0.94144 0.85107 1.88418 1.55927 1.61434 1.24603 1.23035 0.97655 1.00508 0.81342 1.22668 1.00739 0.96296 0.96527 0.85169 1.22201 0.90668 0.93401 0.94791 1.87718 1.49118 1.34902 1.60011 1.22296 1.02985 0.88273 0.87632 1.22203 0.98694 0.99674 0.99064 1.22970 1.00469 0.95647 0.92602 0.83582 1.23701 1.01174 0.95800 0.98442 0.94163 0.79769 0.89917 0.90357 0.91863 0.85579 0.92055 0.93879 0.74411 0.89014 0.92713 0.87008 0.90328 0.90847 0.89276 0.91072 0.93770 0.92812 0.90858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.11 13.06 21.65 0.28 -59.83 16 2 C -0.08 -4.63 5.50 84.86 0.47 -4.17 16 3 Si 0.97 45.67 29.55 68.60 2.03 47.70 16 4 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 5 H -0.30 -14.31 7.11 99.48 0.71 -13.60 16 6 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 7 C -0.24 -13.06 9.97 84.03 0.84 -12.22 16 8 H 0.08 4.13 7.83 -2.91 -0.02 4.10 16 9 N -0.73 -36.23 5.40 -320.46 -1.73 -37.96 16 10 C 0.14 5.17 4.48 45.52 0.20 5.38 16 11 C -0.14 -4.15 7.39 31.12 0.23 -3.92 16 12 C -0.09 -2.08 3.76 -10.27 -0.04 -2.11 16 13 C 0.14 3.38 5.51 86.38 0.48 3.85 16 14 N -0.70 -13.32 5.49 -463.05 -2.54 -15.86 16 15 C 0.51 12.54 5.39 87.66 0.47 13.01 16 16 O -0.58 -21.28 16.55 15.37 0.25 -21.02 16 17 C 0.07 1.11 3.54 30.80 0.11 1.22 16 18 H 0.13 1.32 8.14 -2.39 -0.02 1.30 16 19 O -0.39 -9.13 10.24 -130.58 -1.34 -10.47 16 20 C 0.05 0.81 6.75 72.14 0.49 1.29 16 21 C -0.14 -1.32 2.96 -10.79 -0.03 -1.36 16 22 H 0.13 0.37 8.14 -2.38 -0.02 0.35 16 23 C 0.07 0.62 6.14 71.36 0.44 1.06 16 24 O -0.40 -7.05 10.45 -148.81 -1.55 -8.60 16 25 C 0.06 1.08 6.80 71.90 0.49 1.56 16 26 C -0.16 -3.00 4.11 30.54 0.13 -2.87 16 27 C -0.10 -1.16 3.60 -9.35 -0.03 -1.19 16 28 H 0.15 0.70 8.14 -2.38 -0.02 0.68 16 29 C -0.15 -4.43 7.43 31.12 0.23 -4.20 16 30 H 0.25 15.00 8.31 -92.71 -0.77 14.23 16 31 H 0.37 20.18 7.93 -92.70 -0.73 19.45 16 32 H 0.08 2.87 8.10 -2.39 -0.02 2.85 16 33 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 34 H 0.06 2.11 8.08 -2.39 -0.02 2.09 16 35 H 0.13 2.02 8.14 -2.39 -0.02 2.00 16 36 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 37 H 0.04 1.30 7.84 -2.39 -0.02 1.28 16 38 H 0.42 4.62 8.47 -92.71 -0.79 3.83 16 39 H 0.09 1.04 8.14 -2.39 -0.02 1.03 16 40 H 0.05 1.09 7.71 -2.39 -0.02 1.07 16 41 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 42 H 0.08 0.45 8.14 -2.39 -0.02 0.43 16 43 H 0.07 0.90 8.12 -2.39 -0.02 0.88 16 44 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 45 H 0.07 1.46 7.72 -2.39 -0.02 1.44 16 46 H 0.04 1.20 7.00 -2.39 -0.02 1.18 16 47 H 0.05 1.87 7.90 -2.39 -0.02 1.85 16 48 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 Total: -1.00 -79.31 379.96 -0.69 -80.00 By element: Atomic # 1 Polarization: 31.27 SS G_CDS: -0.56 Total: 30.71 kcal Atomic # 6 Polarization: -9.12 SS G_CDS: 4.46 Total: -4.66 kcal Atomic # 7 Polarization: -109.67 SS G_CDS: -3.99 Total: -113.66 kcal Atomic # 8 Polarization: -37.46 SS G_CDS: -2.64 Total: -40.10 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 2.03 Total: 47.70 kcal Total: -79.31 -0.69 -80.00 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091159757.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.671 kcal (2) G-P(sol) polarization free energy of solvation -79.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds