Wall clock time and date at job start Tue Mar 31 2020 14:43:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.55421 * 2 1 4 4 N 1.46502 * 109.47082 * 60.12625 * 3 2 1 5 5 C 1.34774 * 120.00289 * 180.02562 * 4 3 2 6 6 O 1.21282 * 119.99709 * 359.97438 * 5 4 3 7 7 C 1.50695 * 120.00255 * 180.02562 * 5 4 3 8 8 C 1.50707 * 109.47237 * 180.02562 * 7 5 4 9 9 C 1.29980 * 118.74207 * 94.73065 * 8 7 5 10 10 C 1.50229 * 122.86451 * 180.14797 * 9 8 7 11 11 O 1.42904 * 110.18683 * 344.88117 * 10 9 8 12 12 C 1.43305 * 113.01807 * 49.97757 * 11 10 9 13 13 C 1.50386 * 118.74286 * 275.00117 * 8 7 5 14 14 C 1.53294 * 109.51505 * 239.87181 * 2 1 3 15 15 N 1.47231 * 108.40580 * 292.38573 * 14 2 1 16 16 C 1.36930 * 121.03478 * 129.45775 * 15 14 2 17 17 H 1.08002 * 120.00530 * 206.18179 * 16 15 14 18 18 C 1.38816 * 119.99608 * 26.18409 * 16 15 14 19 19 N 1.31615 * 120.00526 * 16.88476 * 18 16 15 20 20 Si 1.86806 * 119.99896 * 196.88547 * 18 16 15 21 21 H 1.48497 * 109.46975 * 59.99586 * 20 18 16 22 22 H 1.48495 * 109.47304 * 179.97438 * 20 18 16 23 23 H 1.48504 * 109.47064 * 300.00118 * 20 18 16 24 24 C 1.47154 * 117.98080 * 309.48144 * 15 14 2 25 25 C 1.53298 * 108.41825 * 50.52276 * 24 15 14 26 26 O 1.42959 * 109.51115 * 120.12529 * 2 1 3 27 27 H 1.09004 * 109.46996 * 299.87189 * 1 2 3 28 28 H 1.08996 * 109.47344 * 59.87067 * 1 2 3 29 29 H 1.09000 * 109.46808 * 179.87595 * 1 2 3 30 30 H 1.09002 * 109.47344 * 180.12437 * 3 2 1 31 31 H 1.08999 * 109.46999 * 300.12635 * 3 2 1 32 32 H 0.97000 * 120.00089 * 0.02562 * 4 3 2 33 33 H 1.08999 * 109.47080 * 299.99449 * 7 5 4 34 34 H 1.08999 * 109.47266 * 59.99972 * 7 5 4 35 35 H 1.07995 * 118.56899 * 0.38904 * 9 8 7 36 36 H 1.09002 * 109.50346 * 224.55003 * 10 9 8 37 37 H 1.09007 * 109.05750 * 104.92439 * 10 9 8 38 38 H 1.09002 * 109.67945 * 172.07124 * 12 11 10 39 39 H 1.08993 * 109.68291 * 51.51685 * 12 11 10 40 40 H 1.09000 * 109.44822 * 283.41350 * 13 8 7 41 41 H 1.09004 * 109.45125 * 43.33411 * 13 8 7 42 42 H 1.09001 * 109.68145 * 52.09850 * 14 2 1 43 43 H 1.09001 * 109.68444 * 172.65236 * 14 2 1 44 44 H 0.97002 * 120.00383 * 180.02562 * 19 18 16 45 45 H 1.08997 * 109.68310 * 290.77594 * 24 15 14 46 46 H 1.09005 * 109.67869 * 170.26376 * 24 15 14 47 47 H 1.09001 * 109.51044 * 67.59999 * 25 24 15 48 48 H 1.09000 * 109.51036 * 187.70217 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0421 1.4418 0.0000 4 7 1.5572 2.1322 1.1977 5 6 1.8847 3.4220 1.4111 6 8 2.5811 4.0110 0.6117 7 6 1.3864 4.1320 2.6433 8 6 1.8897 5.5526 2.6427 9 6 1.1255 6.4862 2.1590 10 6 1.5350 7.9308 2.1095 11 8 2.6645 8.1524 2.9565 12 6 3.7263 7.2169 2.7307 13 6 3.2592 5.8349 3.1961 14 6 2.0421 -0.7252 -1.2497 15 7 1.6959 -2.1516 -1.1340 16 6 1.0613 -2.8090 -2.1539 17 1 0.4490 -3.6729 -1.9412 18 6 1.2049 -2.3650 -3.4612 19 7 2.1856 -1.5448 -3.7738 20 14 0.0060 -2.9315 -4.7770 21 1 -1.3700 -2.5146 -4.4056 22 1 0.3739 -2.3190 -6.0788 23 1 0.0607 -4.4111 -4.8926 24 6 2.0522 -2.8497 0.1114 25 6 1.5396 -2.0210 1.2949 26 8 2.0075 -0.6763 1.1655 27 1 -0.3633 0.5119 0.8912 28 1 -0.3634 0.5158 -0.8888 29 1 -0.3633 -1.0277 -0.0022 30 1 3.1321 1.4402 -0.0022 31 1 1.6776 1.9568 -0.8888 32 1 1.0005 1.6610 1.8372 33 1 0.2964 4.1332 2.6462 34 1 1.7516 3.6172 3.5320 35 1 0.1523 6.2120 1.7795 36 1 0.7059 8.5556 2.4418 37 1 1.7957 8.1919 1.0838 38 1 4.6070 7.5172 3.2985 39 1 3.9673 7.1845 1.6683 40 1 3.2224 5.8118 4.2852 41 1 3.9576 5.0771 2.8408 42 1 1.5705 -0.3042 -2.1376 43 1 3.1241 -0.6147 -1.3208 44 1 2.2857 -1.2342 -4.6873 45 1 3.1352 -2.9532 0.1774 46 1 1.5878 -3.8358 0.1252 47 1 0.4496 -2.0284 1.2995 48 1 1.9106 -2.4484 2.2264 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108187375.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:43:05 Heat of formation + Delta-G solvation = -87.914890 kcal Electronic energy + Delta-G solvation = -28382.942516 eV Core-core repulsion = 24439.017079 eV Total energy + Delta-G solvation = -3943.925437 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.14067 -39.36699 -38.63925 -35.16385 -34.66051 -34.32480 -31.86881 -31.29394 -31.27588 -29.40205 -27.98445 -26.46837 -25.63327 -24.32034 -23.69716 -23.26113 -21.31107 -20.36018 -18.75433 -18.22498 -17.31517 -16.90811 -16.62964 -16.42392 -15.85803 -15.43468 -15.23048 -15.14142 -14.87535 -14.39197 -14.15466 -13.92604 -13.64775 -13.54903 -13.25857 -13.06415 -12.95897 -12.75126 -12.58559 -12.46643 -12.13051 -11.85579 -11.62853 -11.42691 -11.23045 -11.04297 -10.84343 -10.76397 -10.71260 -10.35250 -10.30570 -10.03940 -9.89620 -9.79996 -9.57868 -9.11208 -8.97195 -8.83277 -8.57103 -6.78049 -5.87887 -3.31343 1.89496 2.75179 3.31538 3.38292 3.39006 3.42028 3.68089 4.21111 4.40531 4.43641 4.50401 4.78273 4.95693 5.04504 5.12072 5.13947 5.18830 5.26606 5.30359 5.31253 5.42059 5.44087 5.48034 5.58331 5.63626 5.64315 5.74784 5.87904 5.90147 5.98635 6.06060 6.10199 6.26779 6.28879 6.42035 6.54246 6.63965 6.65916 6.72420 6.78564 6.92194 7.03194 7.42568 7.66003 7.67129 7.83872 8.29231 8.35896 9.07104 9.70301 10.27530 11.20121 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.021417 B = 0.002586 C = 0.002442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.061053 B =10824.027271 C =11465.412980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.078 3.922 3 C 0.140 3.860 4 N -0.718 5.718 5 C 0.510 3.490 6 O -0.540 6.540 7 C -0.109 4.109 8 C -0.086 4.086 9 C -0.194 4.194 10 C 0.093 3.907 11 O -0.382 6.382 12 C 0.060 3.940 13 C -0.116 4.116 14 C 0.160 3.840 15 N -0.591 5.591 16 C -0.256 4.256 17 H 0.068 0.932 18 C 0.004 3.996 19 N -0.902 5.902 20 Si 0.903 3.097 21 H -0.283 1.283 22 H -0.289 1.289 23 H -0.282 1.282 24 C 0.109 3.891 25 C 0.046 3.954 26 O -0.384 6.384 27 H 0.041 0.959 28 H 0.062 0.938 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.080 0.920 32 H 0.402 0.598 33 H 0.098 0.902 34 H 0.100 0.900 35 H 0.115 0.885 36 H 0.101 0.899 37 H 0.062 0.938 38 H 0.096 0.904 39 H 0.058 0.942 40 H 0.080 0.920 41 H 0.085 0.915 42 H 0.096 0.904 43 H 0.029 0.971 44 H 0.256 0.744 45 H 0.025 0.975 46 H 0.061 0.939 47 H 0.048 0.952 48 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.678 12.628 14.919 19.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.037 3.963 3 C 0.017 3.983 4 N -0.370 5.370 5 C 0.296 3.704 6 O -0.417 6.417 7 C -0.149 4.149 8 C -0.086 4.086 9 C -0.212 4.212 10 C 0.017 3.983 11 O -0.301 6.301 12 C -0.017 4.017 13 C -0.153 4.153 14 C 0.033 3.967 15 N -0.314 5.314 16 C -0.385 4.385 17 H 0.086 0.914 18 C -0.195 4.195 19 N -0.545 5.545 20 Si 0.733 3.267 21 H -0.210 1.210 22 H -0.215 1.215 23 H -0.208 1.208 24 C -0.018 4.018 25 C -0.032 4.032 26 O -0.304 6.304 27 H 0.060 0.940 28 H 0.081 0.919 29 H 0.092 0.908 30 H 0.090 0.910 31 H 0.098 0.902 32 H 0.236 0.764 33 H 0.116 0.884 34 H 0.118 0.882 35 H 0.133 0.867 36 H 0.119 0.881 37 H 0.080 0.920 38 H 0.114 0.886 39 H 0.077 0.923 40 H 0.099 0.901 41 H 0.104 0.896 42 H 0.114 0.886 43 H 0.047 0.953 44 H 0.067 0.933 45 H 0.043 0.957 46 H 0.080 0.920 47 H 0.066 0.934 48 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -1.997 13.312 14.401 19.712 hybrid contribution -1.095 -1.164 -0.900 1.834 sum -3.092 12.148 13.501 18.423 Atomic orbital electron populations 1.22201 0.95768 1.03232 1.00679 1.22549 0.93538 0.90680 0.89516 1.21341 0.99845 0.89895 0.87264 1.46008 1.53562 1.11622 1.25791 1.20477 0.80697 0.81856 0.87397 1.90708 1.37850 1.66121 1.47009 1.20812 1.02346 0.94074 0.97664 1.20384 0.95803 0.93271 0.99149 1.22668 1.00868 0.95733 1.01949 1.21378 0.88846 0.93373 0.94716 1.88086 1.26463 1.54116 1.61453 1.22639 0.89939 0.88084 1.01017 1.21035 0.94770 0.98543 1.00983 1.21302 0.97792 0.83938 0.93654 1.44005 1.68642 1.04946 1.13827 1.19111 1.21778 1.12200 0.85390 0.91447 1.25040 0.97278 1.00081 0.97097 1.70000 1.29207 1.36687 1.18656 0.86357 0.80965 0.78363 0.81019 1.20983 1.21521 1.20827 1.21598 0.97560 0.95232 0.87366 1.23034 0.98291 0.83122 0.98736 1.87806 1.72942 1.25832 1.43811 0.93963 0.91934 0.90810 0.90953 0.90195 0.76354 0.88399 0.88194 0.86731 0.88148 0.91964 0.88575 0.92339 0.90131 0.89611 0.88571 0.95287 0.93344 0.95663 0.92046 0.93396 0.90178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.68 7.92 37.16 0.29 -2.39 16 2 C 0.08 1.42 0.76 -90.47 -0.07 1.35 16 3 C 0.14 2.36 4.82 -4.04 -0.02 2.34 16 4 N -0.72 -9.83 5.15 -60.29 -0.31 -10.15 16 5 C 0.51 7.06 7.82 -10.99 -0.09 6.98 16 6 O -0.54 -9.58 16.03 5.56 0.09 -9.49 16 7 C -0.11 -1.08 5.77 -29.03 -0.17 -1.25 16 8 C -0.09 -0.93 4.40 -100.93 -0.44 -1.37 16 9 C -0.19 -2.01 9.54 -35.97 -0.34 -2.36 16 10 C 0.09 0.90 7.04 35.78 0.25 1.15 16 11 O -0.38 -4.28 10.85 -35.23 -0.38 -4.67 16 12 C 0.06 0.60 6.89 37.22 0.26 0.85 16 13 C -0.12 -1.17 6.09 -27.97 -0.17 -1.34 16 14 C 0.16 3.67 4.12 -3.49 -0.01 3.66 16 15 N -0.59 -14.19 2.57 -171.76 -0.44 -14.63 16 16 C -0.26 -6.72 9.65 -15.06 -0.15 -6.87 16 17 H 0.07 1.73 7.88 -52.49 -0.41 1.32 16 18 C 0.00 0.11 4.95 -17.43 -0.09 0.02 16 19 N -0.90 -25.49 11.14 55.49 0.62 -24.87 16 20 Si 0.90 21.08 29.59 -169.99 -5.03 16.05 16 21 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 22 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 23 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 24 C 0.11 2.20 6.73 -3.53 -0.02 2.17 16 25 C 0.05 0.77 6.60 37.31 0.25 1.02 16 26 O -0.38 -6.87 9.97 -35.23 -0.35 -7.22 16 27 H 0.04 0.58 6.88 -51.93 -0.36 0.22 16 28 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 29 H 0.07 1.35 6.11 -51.93 -0.32 1.03 16 30 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 31 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 32 H 0.40 4.73 7.21 -40.82 -0.29 4.43 16 33 H 0.10 0.78 7.87 -51.93 -0.41 0.37 16 34 H 0.10 0.81 8.13 -51.93 -0.42 0.38 16 35 H 0.11 1.06 7.84 -52.49 -0.41 0.65 16 36 H 0.10 0.76 8.14 -51.93 -0.42 0.33 16 37 H 0.06 0.58 8.14 -51.92 -0.42 0.16 16 38 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.06 0.62 8.10 -51.93 -0.42 0.20 16 40 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.10 2.45 6.14 -51.93 -0.32 2.13 16 43 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 45 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.06 1.17 7.96 -51.93 -0.41 0.76 16 47 H 0.05 0.78 6.25 -51.93 -0.32 0.45 16 48 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 377.95 15.07 5.70 5.70 Total: -1.00 -31.56 377.95 -8.52 -40.08 By element: Atomic # 1 Polarization: 13.11 SS G_CDS: -7.89 Total: 5.22 kcal Atomic # 6 Polarization: 4.48 SS G_CDS: -0.52 Total: 3.96 kcal Atomic # 7 Polarization: -49.51 SS G_CDS: -0.13 Total: -49.64 kcal Atomic # 8 Polarization: -20.73 SS G_CDS: -0.64 Total: -21.37 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.03 Total: 16.05 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -31.56 -8.52 -40.08 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108187375.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.835 kcal (2) G-P(sol) polarization free energy of solvation -31.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds