Wall clock time and date at job start Tue Mar 31 2020 14:43:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.55421 * 2 1 4 4 N 1.46502 * 109.47082 * 60.12625 * 3 2 1 5 5 C 1.34774 * 120.00289 * 180.02562 * 4 3 2 6 6 O 1.21282 * 119.99709 * 359.97438 * 5 4 3 7 7 C 1.50695 * 120.00255 * 180.02562 * 5 4 3 8 8 C 1.50707 * 109.47237 * 180.02562 * 7 5 4 9 9 C 1.29980 * 118.74207 * 94.73065 * 8 7 5 10 10 C 1.50229 * 122.86451 * 180.14797 * 9 8 7 11 11 O 1.42904 * 110.18683 * 344.88117 * 10 9 8 12 12 C 1.43305 * 113.01807 * 49.97757 * 11 10 9 13 13 C 1.50386 * 118.74286 * 275.00117 * 8 7 5 14 14 C 1.53294 * 109.51505 * 239.87181 * 2 1 3 15 15 N 1.47231 * 108.40580 * 292.38573 * 14 2 1 16 16 C 1.36930 * 121.03478 * 129.45775 * 15 14 2 17 17 H 1.08002 * 120.00530 * 206.18179 * 16 15 14 18 18 C 1.38816 * 119.99608 * 26.18409 * 16 15 14 19 19 N 1.31615 * 120.00526 * 16.88476 * 18 16 15 20 20 Si 1.86806 * 119.99896 * 196.88547 * 18 16 15 21 21 H 1.48497 * 109.46975 * 59.99586 * 20 18 16 22 22 H 1.48495 * 109.47304 * 179.97438 * 20 18 16 23 23 H 1.48504 * 109.47064 * 300.00118 * 20 18 16 24 24 C 1.47154 * 117.98080 * 309.48144 * 15 14 2 25 25 C 1.53298 * 108.41825 * 50.52276 * 24 15 14 26 26 O 1.42959 * 109.51115 * 120.12529 * 2 1 3 27 27 H 1.09004 * 109.46996 * 299.87189 * 1 2 3 28 28 H 1.08996 * 109.47344 * 59.87067 * 1 2 3 29 29 H 1.09000 * 109.46808 * 179.87595 * 1 2 3 30 30 H 1.09002 * 109.47344 * 180.12437 * 3 2 1 31 31 H 1.08999 * 109.46999 * 300.12635 * 3 2 1 32 32 H 0.97000 * 120.00089 * 0.02562 * 4 3 2 33 33 H 1.08999 * 109.47080 * 299.99449 * 7 5 4 34 34 H 1.08999 * 109.47266 * 59.99972 * 7 5 4 35 35 H 1.07995 * 118.56899 * 0.38904 * 9 8 7 36 36 H 1.09002 * 109.50346 * 224.55003 * 10 9 8 37 37 H 1.09007 * 109.05750 * 104.92439 * 10 9 8 38 38 H 1.09002 * 109.67945 * 172.07124 * 12 11 10 39 39 H 1.08993 * 109.68291 * 51.51685 * 12 11 10 40 40 H 1.09000 * 109.44822 * 283.41350 * 13 8 7 41 41 H 1.09004 * 109.45125 * 43.33411 * 13 8 7 42 42 H 1.09001 * 109.68145 * 52.09850 * 14 2 1 43 43 H 1.09001 * 109.68444 * 172.65236 * 14 2 1 44 44 H 0.97002 * 120.00383 * 180.02562 * 19 18 16 45 45 H 1.08997 * 109.68310 * 290.77594 * 24 15 14 46 46 H 1.09005 * 109.67869 * 170.26376 * 24 15 14 47 47 H 1.09001 * 109.51044 * 67.59999 * 25 24 15 48 48 H 1.09000 * 109.51036 * 187.70217 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0421 1.4418 0.0000 4 7 1.5572 2.1322 1.1977 5 6 1.8847 3.4220 1.4111 6 8 2.5811 4.0110 0.6117 7 6 1.3864 4.1320 2.6433 8 6 1.8897 5.5526 2.6427 9 6 1.1255 6.4862 2.1590 10 6 1.5350 7.9308 2.1095 11 8 2.6645 8.1524 2.9565 12 6 3.7263 7.2169 2.7307 13 6 3.2592 5.8349 3.1961 14 6 2.0421 -0.7252 -1.2497 15 7 1.6959 -2.1516 -1.1340 16 6 1.0613 -2.8090 -2.1539 17 1 0.4490 -3.6729 -1.9412 18 6 1.2049 -2.3650 -3.4612 19 7 2.1856 -1.5448 -3.7738 20 14 0.0060 -2.9315 -4.7770 21 1 -1.3700 -2.5146 -4.4056 22 1 0.3739 -2.3190 -6.0788 23 1 0.0607 -4.4111 -4.8926 24 6 2.0522 -2.8497 0.1114 25 6 1.5396 -2.0210 1.2949 26 8 2.0075 -0.6763 1.1655 27 1 -0.3633 0.5119 0.8912 28 1 -0.3634 0.5158 -0.8888 29 1 -0.3633 -1.0277 -0.0022 30 1 3.1321 1.4402 -0.0022 31 1 1.6776 1.9568 -0.8888 32 1 1.0005 1.6610 1.8372 33 1 0.2964 4.1332 2.6462 34 1 1.7516 3.6172 3.5320 35 1 0.1523 6.2120 1.7795 36 1 0.7059 8.5556 2.4418 37 1 1.7957 8.1919 1.0838 38 1 4.6070 7.5172 3.2985 39 1 3.9673 7.1845 1.6683 40 1 3.2224 5.8118 4.2852 41 1 3.9576 5.0771 2.8408 42 1 1.5705 -0.3042 -2.1376 43 1 3.1241 -0.6147 -1.3208 44 1 2.2857 -1.2342 -4.6873 45 1 3.1352 -2.9532 0.1774 46 1 1.5878 -3.8358 0.1252 47 1 0.4496 -2.0284 1.2995 48 1 1.9106 -2.4484 2.2264 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108187375.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:43:04 Heat of formation + Delta-G solvation = -109.484385 kcal Electronic energy + Delta-G solvation = -28383.877839 eV Core-core repulsion = 24439.017079 eV Total energy + Delta-G solvation = -3944.860760 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.25536 -40.55594 -39.79293 -36.57508 -35.98470 -35.55680 -33.29231 -33.16715 -32.02635 -30.32999 -29.56253 -28.03266 -27.13834 -25.19791 -24.97804 -24.53503 -22.90191 -21.51574 -20.31238 -19.05612 -18.90301 -18.23371 -17.56382 -17.40713 -17.16528 -16.83957 -16.52193 -16.18002 -16.07856 -15.87710 -15.60536 -15.31965 -15.14129 -14.76109 -14.56693 -14.43968 -14.07069 -13.80976 -13.72923 -13.44382 -13.24467 -13.17604 -12.92918 -12.85230 -12.75696 -12.53017 -12.44856 -12.19859 -12.19205 -11.96305 -11.84892 -11.51822 -11.18385 -10.99128 -10.75561 -10.61132 -10.50096 -10.08942 -9.77854 -8.72882 -7.90540 -5.37312 1.09356 1.45690 1.47598 1.54521 1.67521 2.28470 2.48549 2.79180 2.93770 3.24287 3.50229 3.65510 3.77665 3.88063 4.00542 4.03648 4.07946 4.11364 4.27889 4.41885 4.42374 4.46496 4.48871 4.55744 4.56595 4.61179 4.64476 4.71094 4.71509 4.78726 4.82251 4.90816 4.96921 5.00848 5.04534 5.12295 5.20575 5.35659 5.40619 5.52443 5.52656 5.60462 5.87421 6.15769 6.28285 6.36606 6.59773 7.05907 7.28777 7.75451 8.29467 9.14960 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.021417 B = 0.002586 C = 0.002442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.061053 B =10824.027271 C =11465.412980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.095 3.905 3 C 0.151 3.849 4 N -0.707 5.707 5 C 0.509 3.491 6 O -0.584 6.584 7 C -0.098 4.098 8 C -0.106 4.106 9 C -0.197 4.197 10 C 0.086 3.914 11 O -0.395 6.395 12 C 0.057 3.943 13 C -0.116 4.116 14 C 0.167 3.833 15 N -0.607 5.607 16 C -0.260 4.260 17 H 0.074 0.926 18 C -0.050 4.050 19 N -0.937 5.937 20 Si 0.967 3.033 21 H -0.275 1.275 22 H -0.298 1.298 23 H -0.275 1.275 24 C 0.101 3.899 25 C 0.053 3.947 26 O -0.384 6.384 27 H 0.080 0.920 28 H 0.053 0.947 29 H 0.060 0.940 30 H 0.050 0.950 31 H 0.068 0.932 32 H 0.415 0.585 33 H 0.125 0.875 34 H 0.125 0.875 35 H 0.126 0.874 36 H 0.122 0.878 37 H 0.060 0.940 38 H 0.115 0.885 39 H 0.044 0.956 40 H 0.096 0.904 41 H 0.074 0.926 42 H 0.066 0.934 43 H -0.010 1.010 44 H 0.250 0.750 45 H 0.011 0.989 46 H 0.072 0.928 47 H 0.062 0.938 48 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.748 12.646 17.478 22.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.053 3.947 3 C 0.026 3.974 4 N -0.360 5.360 5 C 0.297 3.703 6 O -0.464 6.464 7 C -0.137 4.137 8 C -0.107 4.107 9 C -0.216 4.216 10 C 0.010 3.990 11 O -0.315 6.315 12 C -0.020 4.020 13 C -0.153 4.153 14 C 0.040 3.960 15 N -0.331 5.331 16 C -0.389 4.389 17 H 0.092 0.908 18 C -0.246 4.246 19 N -0.583 5.583 20 Si 0.795 3.205 21 H -0.200 1.200 22 H -0.224 1.224 23 H -0.201 1.201 24 C -0.025 4.025 25 C -0.024 4.024 26 O -0.303 6.303 27 H 0.099 0.901 28 H 0.072 0.928 29 H 0.079 0.921 30 H 0.069 0.931 31 H 0.086 0.914 32 H 0.253 0.747 33 H 0.143 0.857 34 H 0.143 0.857 35 H 0.144 0.856 36 H 0.140 0.860 37 H 0.078 0.922 38 H 0.133 0.867 39 H 0.062 0.938 40 H 0.114 0.886 41 H 0.093 0.907 42 H 0.084 0.916 43 H 0.008 0.992 44 H 0.059 0.941 45 H 0.029 0.971 46 H 0.090 0.910 47 H 0.080 0.920 48 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -4.094 13.304 17.020 21.987 hybrid contribution -0.384 -1.203 -1.677 2.099 sum -4.478 12.101 15.343 20.047 Atomic orbital electron populations 1.22105 0.93887 1.02823 1.02162 1.22171 0.94662 0.90551 0.87268 1.20962 0.98502 0.89488 0.88473 1.45835 1.53539 1.11731 1.24849 1.21241 0.79606 0.81409 0.88047 1.90699 1.39845 1.66995 1.48864 1.20828 1.03863 0.93050 0.95990 1.20618 0.96221 0.93947 0.99910 1.22910 1.01408 0.96016 1.01234 1.21563 0.89113 0.93654 0.94628 1.88065 1.27010 1.54541 1.61837 1.22722 0.90461 0.88272 1.00515 1.21041 0.94382 0.98027 1.01885 1.21069 0.95252 0.84414 0.95217 1.44266 1.68645 1.05555 1.14674 1.19475 1.21318 1.12055 0.86100 0.90830 1.25799 0.98814 1.00763 0.99197 1.70177 1.31120 1.38468 1.18523 0.85352 0.79135 0.78012 0.78038 1.20037 1.22403 1.20089 1.21833 0.96994 0.96412 0.87231 1.23105 0.99132 0.81762 0.98415 1.87818 1.73270 1.26440 1.42820 0.90111 0.92805 0.92072 0.93139 0.91370 0.74727 0.85656 0.85719 0.85574 0.85984 0.92186 0.86743 0.93801 0.88588 0.90716 0.91608 0.99192 0.94085 0.97089 0.90984 0.92032 0.86368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.78 7.92 71.98 0.57 -4.21 16 2 C 0.09 3.39 0.76 -10.69 -0.01 3.38 16 3 C 0.15 5.11 4.82 86.38 0.42 5.53 16 4 N -0.71 -18.06 5.15 -463.06 -2.39 -20.44 16 5 C 0.51 13.32 7.82 87.66 0.69 14.00 16 6 O -0.58 -20.79 16.03 -3.04 -0.05 -20.83 16 7 C -0.10 -1.64 5.77 29.10 0.17 -1.47 16 8 C -0.11 -2.11 4.40 -15.53 -0.07 -2.18 16 9 C -0.20 -3.74 9.54 26.55 0.25 -3.48 16 10 C 0.09 1.55 7.04 71.09 0.50 2.05 16 11 O -0.40 -8.41 10.85 -148.98 -1.62 -10.02 16 12 C 0.06 1.09 6.89 72.02 0.50 1.59 16 13 C -0.12 -2.20 6.09 29.79 0.18 -2.02 16 14 C 0.17 7.98 4.12 86.34 0.36 8.34 16 15 N -0.61 -29.53 2.57 -697.32 -1.79 -31.32 16 16 C -0.26 -13.75 9.65 84.04 0.81 -12.94 16 17 H 0.07 3.73 7.88 -2.91 -0.02 3.71 16 18 C -0.05 -2.75 4.95 84.86 0.42 -2.33 16 19 N -0.94 -55.14 11.14 21.65 0.24 -54.90 16 20 Si 0.97 43.88 29.59 68.60 2.03 45.91 16 21 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 22 H -0.30 -13.79 7.11 99.48 0.71 -13.09 16 23 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 24 C 0.10 3.98 6.73 86.35 0.58 4.56 16 25 C 0.05 1.63 6.60 72.08 0.48 2.10 16 26 O -0.38 -12.95 9.97 -148.98 -1.49 -14.44 16 27 H 0.08 1.90 6.88 -2.38 -0.02 1.89 16 28 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 29 H 0.06 2.10 6.11 -2.39 -0.01 2.08 16 30 H 0.05 1.92 8.14 -2.39 -0.02 1.91 16 31 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 32 H 0.42 8.30 7.21 -92.71 -0.67 7.63 16 33 H 0.13 1.45 7.87 -2.39 -0.02 1.43 16 34 H 0.12 1.51 8.13 -2.39 -0.02 1.49 16 35 H 0.13 2.02 7.84 -2.91 -0.02 2.00 16 36 H 0.12 1.59 8.14 -2.39 -0.02 1.58 16 37 H 0.06 1.09 8.14 -2.38 -0.02 1.07 16 38 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 39 H 0.04 0.95 8.10 -2.39 -0.02 0.93 16 40 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 41 H 0.07 1.57 8.14 -2.38 -0.02 1.55 16 42 H 0.07 3.53 6.14 -2.39 -0.01 3.51 16 43 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 44 H 0.25 14.39 8.31 -92.71 -0.77 13.62 16 45 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 46 H 0.07 2.65 7.96 -2.38 -0.02 2.63 16 47 H 0.06 1.77 6.25 -2.39 -0.01 1.75 16 48 H 0.12 2.79 8.14 -2.39 -0.02 2.77 16 Total: -1.00 -71.10 377.95 1.07 -70.03 By element: Atomic # 1 Polarization: 22.80 SS G_CDS: 0.29 Total: 23.09 kcal Atomic # 6 Polarization: 7.08 SS G_CDS: 5.84 Total: 12.92 kcal Atomic # 7 Polarization: -102.72 SS G_CDS: -3.94 Total: -106.66 kcal Atomic # 8 Polarization: -42.14 SS G_CDS: -3.15 Total: -45.29 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.91 kcal Total: -71.10 1.07 -70.03 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108187375.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.453 kcal (2) G-P(sol) polarization free energy of solvation -71.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds