Wall clock time and date at job start Tue Mar 31 2020 13:45:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86797 * 120.00026 * 2 1 4 4 H 1.48500 * 109.47222 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47264 * 299.99421 * 3 2 1 6 6 H 1.48505 * 109.47179 * 59.99458 * 3 2 1 7 7 C 1.38812 * 120.00143 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00353 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00088 * 0.02562 * 7 2 1 10 10 C 1.50451 * 130.70808 * 359.90425 * 9 7 2 11 11 H 1.09001 * 116.60488 * 359.90679 * 10 9 7 12 12 C 1.55848 * 100.95583 * 233.85538 * 10 9 7 13 13 C 1.54854 * 103.58870 * 327.25962 * 12 10 9 14 14 C 1.50232 * 130.84137 * 179.97438 * 9 7 2 15 15 H 1.09000 * 116.46326 * 0.02562 * 14 9 7 16 16 C 1.55850 * 101.05448 * 233.96927 * 14 9 7 17 17 H 1.08994 * 110.62873 * 208.41249 * 16 14 9 18 18 N 1.46498 * 110.62393 * 85.54871 * 16 14 9 19 19 C 1.34778 * 119.99755 * 154.99939 * 18 16 14 20 20 O 1.21286 * 120.00040 * 0.02562 * 19 18 16 21 21 C 1.50698 * 120.00026 * 180.02562 * 19 18 16 22 22 O 1.42903 * 109.47220 * 180.02562 * 21 19 18 23 23 C 1.42902 * 114.00045 * 179.97438 * 22 21 19 24 24 C 1.53006 * 109.46834 * 180.02562 * 23 22 21 25 25 H 1.08995 * 110.33692 * 305.70541 * 24 23 22 26 26 C 1.54477 * 110.36877 * 183.45340 * 24 23 22 27 27 C 1.54508 * 104.06287 * 217.19185 * 26 24 23 28 28 C 1.54477 * 104.06204 * 0.02562 * 27 26 24 29 29 O 1.44426 * 110.36702 * 67.95901 * 24 23 22 30 30 C 1.54850 * 103.44298 * 327.06524 * 16 14 9 31 31 H 0.97002 * 119.99928 * 0.02562 * 1 2 3 32 32 H 1.09002 * 110.62756 * 208.68778 * 12 10 9 33 33 H 1.08994 * 110.62782 * 85.82688 * 12 10 9 34 34 H 1.08993 * 110.62670 * 118.41100 * 13 12 10 35 35 H 1.09002 * 110.62288 * 241.43117 * 13 12 10 36 36 H 0.97002 * 120.00362 * 335.00513 * 18 16 14 37 37 H 1.09000 * 109.47206 * 300.00633 * 21 19 18 38 38 H 1.09004 * 109.47010 * 60.00630 * 21 19 18 39 39 H 1.08995 * 109.47632 * 300.00441 * 23 22 21 40 40 H 1.09002 * 109.46516 * 60.00786 * 23 22 21 41 41 H 1.08999 * 110.51133 * 335.83809 * 26 24 23 42 42 H 1.08999 * 110.51328 * 98.41203 * 26 24 23 43 43 H 1.09006 * 110.51041 * 118.64487 * 27 26 24 44 44 H 1.08994 * 110.51183 * 241.21851 * 27 26 24 45 45 H 1.08996 * 110.37384 * 142.81308 * 28 27 26 46 46 H 1.09004 * 110.36950 * 265.03188 * 28 27 26 47 47 H 1.08996 * 110.63054 * 118.49096 * 30 16 14 48 48 H 1.09005 * 110.62651 * 241.35121 * 30 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7101 1.3464 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8913 2.3965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 -0.1527 -2.6677 0.0019 11 1 -0.8135 -1.8008 0.0048 12 6 -0.2747 -3.6102 1.2371 13 6 1.0664 -4.3844 1.2378 14 6 1.8187 -3.8071 0.0005 15 1 2.8999 -3.9457 0.0010 16 6 1.0669 -4.3847 -1.2364 17 1 0.8955 -5.4544 -1.1166 18 7 1.8166 -4.1184 -2.4666 19 6 1.6525 -4.9148 -3.5415 20 8 0.8838 -5.8516 -3.4905 21 6 2.4241 -4.6412 -4.8067 22 8 2.0799 -5.6148 -5.7945 23 6 2.7596 -5.4447 -7.0399 24 6 2.3158 -6.5359 -8.0163 25 1 2.4579 -7.5214 -7.5731 26 6 3.1018 -6.4238 -9.3414 27 6 2.0619 -6.7828 -10.4263 28 6 0.7704 -7.0686 -9.6284 29 8 0.9330 -6.3461 -8.3876 30 6 -0.2741 -3.6104 -1.2365 31 1 -0.4850 0.8401 -0.0004 32 1 -1.1137 -4.2955 1.1158 33 1 -0.3836 -3.0302 2.1534 34 1 1.6237 -4.1862 2.1532 35 1 0.8925 -5.4537 1.1168 36 1 2.4311 -3.3690 -2.5075 37 1 2.1757 -3.6461 -5.1758 38 1 3.4928 -4.6956 -4.5994 39 1 2.5181 -4.4662 -7.4550 40 1 3.8353 -5.5159 -6.8794 41 1 3.4670 -5.4068 -9.4840 42 1 3.9307 -7.1316 -9.3549 43 1 1.9130 -5.9432 -11.1053 44 1 2.3764 -7.6682 -10.9787 45 1 -0.1002 -6.7010 -10.1713 46 1 0.6727 -8.1369 -9.4348 47 1 -0.3815 -3.0284 -2.1518 48 1 -1.1133 -4.2959 -1.1182 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001111510165.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:45:08 Heat of formation + Delta-G solvation = -103.062878 kcal Electronic energy + Delta-G solvation = -27944.999021 eV Core-core repulsion = 24000.416718 eV Total energy + Delta-G solvation = -3944.582303 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.30567 -40.50455 -39.92140 -38.23109 -35.28367 -34.40071 -33.13524 -31.91237 -30.95942 -30.62078 -29.86014 -28.10601 -26.16090 -25.92553 -23.00626 -22.92919 -21.97676 -21.53199 -21.27212 -20.28056 -18.84626 -18.35514 -17.98311 -17.52569 -17.15005 -16.79408 -16.74311 -16.50510 -16.33010 -15.80165 -15.51949 -15.11159 -15.00129 -14.60455 -14.48502 -13.86828 -13.71880 -13.65462 -13.22149 -12.89963 -12.85524 -12.75873 -12.72490 -12.67162 -12.64586 -12.21431 -12.15684 -12.08717 -11.92870 -11.85767 -11.70431 -11.48657 -11.19642 -10.94042 -10.91742 -10.76365 -10.73099 -10.62079 -9.95552 -8.85809 -7.73921 -5.13815 1.50593 1.51753 1.60692 1.62059 1.88696 2.52034 2.91608 2.98141 3.39567 3.45606 3.65740 3.77481 3.89955 3.99654 4.02835 4.09070 4.14794 4.16736 4.26801 4.28303 4.30038 4.42489 4.46672 4.49543 4.50541 4.56745 4.63133 4.70166 4.80810 4.84342 4.88147 4.90903 4.94762 5.08504 5.10061 5.17009 5.17697 5.19498 5.39170 5.53438 5.60416 5.70298 5.89163 5.91577 6.08640 6.26302 6.65635 7.07406 7.29377 7.74359 8.60262 9.34016 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.016280 B = 0.002583 C = 0.002369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1719.473824 B =10836.163785 C =11814.141866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.070 4.070 3 Si 0.975 3.025 4 H -0.263 1.263 5 H -0.299 1.299 6 H -0.302 1.302 7 C -0.211 4.211 8 H 0.089 0.911 9 N -0.609 5.609 10 C 0.143 3.857 11 H 0.114 0.886 12 C -0.133 4.133 13 C -0.120 4.120 14 C 0.130 3.870 15 H 0.108 0.892 16 C 0.140 3.860 17 H 0.083 0.917 18 N -0.700 5.700 19 C 0.506 3.494 20 O -0.578 6.578 21 C 0.049 3.951 22 O -0.393 6.393 23 C 0.060 3.940 24 C 0.067 3.933 25 H 0.069 0.931 26 C -0.140 4.140 27 C -0.149 4.149 28 C 0.030 3.970 29 O -0.402 6.402 30 C -0.136 4.136 31 H 0.244 0.756 32 H 0.068 0.932 33 H 0.039 0.961 34 H 0.062 0.938 35 H 0.080 0.920 36 H 0.410 0.590 37 H 0.094 0.906 38 H 0.115 0.885 39 H 0.063 0.937 40 H 0.097 0.903 41 H 0.087 0.913 42 H 0.101 0.899 43 H 0.082 0.918 44 H 0.097 0.903 45 H 0.096 0.904 46 H 0.062 0.938 47 H 0.033 0.967 48 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.493 -12.690 -16.487 22.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.262 4.262 3 Si 0.805 3.195 4 H -0.188 1.188 5 H -0.227 1.227 6 H -0.230 1.230 7 C -0.340 4.340 8 H 0.107 0.893 9 N -0.330 5.330 10 C 0.037 3.963 11 H 0.132 0.868 12 C -0.173 4.173 13 C -0.160 4.160 14 C 0.023 3.977 15 H 0.126 0.874 16 C 0.033 3.967 17 H 0.101 0.899 18 N -0.351 5.351 19 C 0.293 3.707 20 O -0.457 6.457 21 C -0.030 4.030 22 O -0.312 6.312 23 C -0.016 4.016 24 C 0.010 3.990 25 H 0.087 0.913 26 C -0.178 4.178 27 C -0.187 4.187 28 C -0.046 4.046 29 O -0.322 6.322 30 C -0.176 4.176 31 H 0.054 0.946 32 H 0.086 0.914 33 H 0.058 0.942 34 H 0.080 0.920 35 H 0.098 0.902 36 H 0.245 0.755 37 H 0.112 0.888 38 H 0.133 0.867 39 H 0.081 0.919 40 H 0.114 0.886 41 H 0.106 0.894 42 H 0.120 0.880 43 H 0.101 0.899 44 H 0.116 0.884 45 H 0.114 0.886 46 H 0.081 0.919 47 H 0.052 0.948 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 8.721 -13.071 -16.304 22.644 hybrid contribution 0.255 1.569 0.069 1.591 sum 8.976 -11.502 -16.235 21.828 Atomic orbital electron populations 1.69757 1.06320 1.24669 1.59224 1.25451 0.96296 1.00448 1.04013 0.85042 0.78341 0.80023 0.76099 1.18757 1.22650 1.22960 1.19423 0.90864 0.82824 1.40901 0.89318 1.46759 1.02067 0.99693 1.84521 1.23613 0.86843 0.94839 0.91027 0.86831 1.22971 0.97368 0.98029 0.98910 1.22854 0.96189 0.98892 0.98050 1.23352 0.97262 0.84447 0.92642 0.87426 1.22432 0.91753 0.98246 0.84230 0.89860 1.45839 1.45310 1.31662 1.12325 1.20875 0.82469 0.81902 0.85433 1.90668 1.39079 1.32083 1.83916 1.22269 1.00230 0.93706 0.86775 1.88018 1.68143 1.52073 1.22958 1.22899 0.97224 0.98743 0.82739 1.23189 0.82152 0.98334 0.95332 0.91320 1.22923 0.98806 1.04417 0.91662 1.22936 0.93895 1.03659 0.98162 1.23646 0.99801 0.96721 0.84457 1.89256 1.28281 1.73688 1.40995 1.23381 0.96805 0.98017 0.99432 0.94616 0.91368 0.94242 0.91953 0.90179 0.75457 0.88813 0.86697 0.91921 0.88557 0.89399 0.88038 0.89902 0.88445 0.88580 0.91940 0.94802 0.92000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -54.68 10.47 21.65 0.23 -54.45 16 2 C -0.07 -3.74 5.50 84.86 0.47 -3.27 16 3 Si 0.97 43.80 29.55 68.60 2.03 45.83 16 4 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16 5 H -0.30 -13.65 7.11 99.48 0.71 -12.94 16 6 H -0.30 -13.95 7.11 99.48 0.71 -13.24 16 7 C -0.21 -10.75 10.59 84.03 0.89 -9.86 16 8 H 0.09 4.23 7.83 -2.91 -0.02 4.21 16 9 N -0.61 -28.22 2.98 -614.13 -1.83 -30.05 16 10 C 0.14 6.63 4.72 46.28 0.22 6.85 16 11 H 0.11 6.22 5.58 -2.39 -0.01 6.21 16 12 C -0.13 -5.21 6.43 32.21 0.21 -5.01 16 13 C -0.12 -4.08 6.44 32.23 0.21 -3.88 16 14 C 0.13 4.77 5.06 46.25 0.23 5.00 16 15 H 0.11 3.53 8.14 -2.39 -0.02 3.51 16 16 C 0.14 5.14 2.80 46.61 0.13 5.27 16 17 H 0.08 3.07 7.23 -2.39 -0.02 3.05 16 18 N -0.70 -23.36 5.07 -434.91 -2.21 -25.56 16 19 C 0.51 17.44 7.91 87.66 0.69 18.14 16 20 O -0.58 -25.25 16.15 15.99 0.26 -24.99 16 21 C 0.05 1.25 6.42 71.24 0.46 1.71 16 22 O -0.39 -11.65 9.88 -127.67 -1.26 -12.91 16 23 C 0.06 1.19 5.54 71.98 0.40 1.59 16 24 C 0.07 1.34 3.57 31.10 0.11 1.45 16 25 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 26 C -0.14 -1.60 6.63 31.61 0.21 -1.39 16 27 C -0.15 -1.61 7.09 31.61 0.22 -1.39 16 28 C 0.03 0.51 7.63 72.48 0.55 1.06 16 29 O -0.40 -10.57 11.35 -148.60 -1.69 -12.26 16 30 C -0.14 -5.71 6.22 32.31 0.20 -5.51 16 31 H 0.24 13.87 8.31 -92.71 -0.77 13.10 16 32 H 0.07 2.36 7.82 -2.39 -0.02 2.34 16 33 H 0.04 1.63 8.14 -2.39 -0.02 1.62 16 34 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 35 H 0.08 2.31 7.82 -2.39 -0.02 2.29 16 36 H 0.41 12.55 8.66 -92.71 -0.80 11.74 16 37 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 38 H 0.12 1.99 8.14 -2.39 -0.02 1.97 16 39 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.10 1.24 8.14 -2.39 -0.02 1.23 16 41 H 0.09 0.84 7.87 -2.39 -0.02 0.83 16 42 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 43 H 0.08 0.79 8.14 -2.38 -0.02 0.77 16 44 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 45 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 46 H 0.06 0.97 8.14 -2.38 -0.02 0.95 16 47 H 0.03 1.56 7.98 -2.39 -0.02 1.54 16 48 H 0.06 2.45 7.82 -2.38 -0.02 2.43 16 Total: -1.00 -73.62 382.07 0.88 -72.74 By element: Atomic # 1 Polarization: 30.73 SS G_CDS: 0.15 Total: 30.88 kcal Atomic # 6 Polarization: 5.57 SS G_CDS: 5.20 Total: 10.78 kcal Atomic # 7 Polarization: -106.25 SS G_CDS: -3.81 Total: -110.06 kcal Atomic # 8 Polarization: -47.47 SS G_CDS: -2.69 Total: -50.16 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.83 kcal Total: -73.62 0.88 -72.74 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001111510165.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.319 kcal (2) G-P(sol) polarization free energy of solvation -73.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds