Wall clock time and date at job start Tue Mar 31 2020 13:58:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86803 * 120.00110 * 2 1 4 4 H 1.48494 * 109.47343 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47135 * 300.00290 * 3 2 1 6 6 H 1.48503 * 109.46985 * 59.99848 * 3 2 1 7 7 C 1.38816 * 120.00108 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99652 * 189.10980 * 7 2 1 9 9 N 1.36934 * 120.00098 * 9.10877 * 7 2 1 10 10 C 1.48148 * 127.83400 * 15.61670 * 9 7 2 11 11 C 1.54395 * 104.72058 * 140.35611 * 10 9 7 12 12 H 1.09001 * 117.61307 * 244.84684 * 11 10 9 13 13 C 1.54594 * 104.81113 * 23.88886 * 11 10 9 14 14 H 1.08997 * 121.79229 * 223.05602 * 13 11 10 15 15 C 1.48147 * 127.84174 * 195.61562 * 9 7 2 16 16 C 1.53001 * 61.49524 * 114.18169 * 13 11 10 17 17 H 1.09003 * 117.44725 * 251.40294 * 16 13 11 18 18 N 1.46506 * 117.44171 * 106.69528 * 16 13 11 19 19 C 1.34777 * 119.99597 * 155.00244 * 18 16 13 20 20 O 1.21282 * 120.00439 * 0.02562 * 19 18 16 21 21 C 1.50701 * 119.99643 * 179.97438 * 19 18 16 22 22 C 1.52996 * 109.47018 * 179.97438 * 21 19 18 23 23 O 1.42907 * 109.46944 * 179.97438 * 22 21 19 24 24 C 1.42897 * 113.99842 * 179.97438 * 23 22 21 25 25 C 1.53173 * 109.54940 * 269.56081 * 24 23 22 26 26 C 1.53090 * 109.16549 * 183.15375 * 25 24 23 27 27 O 1.42904 * 109.41303 * 57.60783 * 26 25 24 28 28 C 1.42901 * 114.09864 * 298.83939 * 27 26 25 29 29 C 1.53091 * 109.41528 * 61.16221 * 28 27 26 30 30 H 0.96998 * 120.00174 * 359.97438 * 1 2 3 31 31 H 1.08994 * 110.40807 * 259.19206 * 10 9 7 32 32 H 1.08997 * 110.40948 * 21.51643 * 10 9 7 33 33 H 1.09006 * 110.40153 * 338.37019 * 15 9 7 34 34 H 1.08990 * 110.40795 * 100.80074 * 15 9 7 35 35 H 0.96996 * 119.99874 * 335.00154 * 18 16 13 36 36 H 1.09002 * 109.47125 * 300.00147 * 21 19 18 37 37 H 1.08999 * 109.47126 * 60.00162 * 21 19 18 38 38 H 1.09002 * 109.47310 * 300.00055 * 22 21 19 39 39 H 1.08998 * 109.47302 * 60.00592 * 22 21 19 40 40 H 1.09006 * 109.54300 * 29.82904 * 24 23 22 41 41 H 1.09005 * 109.51672 * 303.05972 * 25 24 23 42 42 H 1.08996 * 109.52452 * 63.24331 * 25 24 23 43 43 H 1.08999 * 109.48067 * 297.62333 * 26 25 24 44 44 H 1.09005 * 109.47839 * 177.58679 * 26 25 24 45 45 H 1.08999 * 109.48190 * 301.17759 * 28 27 26 46 46 H 1.09005 * 109.48218 * 181.14545 * 28 27 26 47 47 H 1.08995 * 109.52473 * 182.48686 * 29 28 27 48 48 H 1.08994 * 109.52269 * 62.29258 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7101 1.3464 0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8914 2.3965 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0801 -1.2079 0.1486 9 7 1.3385 -2.3807 -0.1867 10 6 -0.0338 -2.5710 -0.7114 11 6 0.0624 -3.8165 -1.6187 12 1 -0.1160 -3.6796 -2.6853 13 6 1.2867 -4.5979 -1.0890 14 1 2.0185 -5.0440 -1.7623 15 6 1.8192 -3.7545 0.0895 16 6 -0.0990 -5.2323 -0.9534 17 1 -0.5293 -5.2905 0.0465 18 7 -0.4196 -6.3505 -1.8440 19 6 -1.3487 -7.2566 -1.4802 20 8 -1.9197 -7.1460 -0.4159 21 6 -1.6790 -8.4065 -2.3966 22 6 -2.7560 -9.2803 -1.7506 23 8 -3.0696 -10.3705 -2.6198 24 6 -4.0701 -11.2529 -2.1077 25 6 -3.4028 -12.3727 -1.3034 26 6 -4.4748 -13.3557 -0.8255 27 8 -5.1848 -13.8698 -1.9541 28 6 -5.8681 -12.8732 -2.7170 29 6 -4.8522 -11.8709 -3.2709 30 1 -0.4850 0.8400 0.0004 31 1 -0.7319 -2.7497 0.1063 32 1 -0.3430 -1.7015 -1.2912 33 1 2.9088 -3.7785 0.1122 34 1 1.4105 -4.1179 1.0322 35 1 0.0367 -6.4387 -2.6953 36 1 -2.0463 -8.0197 -3.3472 37 1 -0.7829 -9.0028 -2.5688 38 1 -2.3883 -9.6671 -0.8001 39 1 -3.6522 -8.6844 -1.5780 40 1 -4.7521 -10.6967 -1.4644 41 1 -2.6842 -12.8958 -1.9343 42 1 -2.8896 -11.9461 -0.4416 43 1 -5.1700 -12.8412 -0.1622 44 1 -4.0009 -14.1777 -0.2889 45 1 -6.5816 -12.3524 -2.0784 46 1 -6.3982 -13.3476 -3.5429 47 1 -5.3755 -11.0854 -3.8160 48 1 -4.1628 -12.3838 -3.9414 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001115098622.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:58:58 Heat of formation + Delta-G solvation = -75.606289 kcal Electronic energy + Delta-G solvation = -26655.762461 eV Core-core repulsion = 22712.370765 eV Total energy + Delta-G solvation = -3943.391696 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.14056 -39.77210 -38.35348 -37.69435 -34.50041 -33.38765 -32.67741 -31.60314 -31.24447 -30.04013 -27.17683 -25.87607 -25.01772 -24.18034 -23.68421 -21.74023 -20.86984 -20.54280 -20.00299 -19.25187 -17.76798 -16.91067 -16.80738 -16.59890 -16.33086 -16.26200 -15.94288 -15.32320 -14.98894 -14.76125 -14.52994 -13.98092 -13.84513 -13.72172 -13.41550 -13.23865 -12.86775 -12.76650 -12.40003 -12.24520 -12.02769 -11.80678 -11.54392 -11.51215 -11.41519 -11.18669 -11.01665 -10.86586 -10.82467 -10.42717 -10.23216 -10.17284 -10.15008 -9.90362 -9.82920 -9.75846 -9.22320 -8.77412 -8.29665 -6.89262 -5.81887 -3.16509 2.53872 2.76616 3.35730 3.38045 3.42276 3.44906 3.52946 4.20848 4.27338 4.31758 4.43860 4.48738 4.53506 4.62352 4.73191 4.77029 4.81721 4.95183 5.05910 5.06631 5.17723 5.20555 5.27801 5.32606 5.34943 5.35987 5.47664 5.53911 5.54767 5.55351 5.67232 5.76353 5.79325 5.86398 6.11948 6.21903 6.49475 6.65465 6.70307 6.75019 6.85136 6.86197 7.34153 7.50015 7.52407 7.69851 8.18139 8.19207 9.08584 9.71289 10.48118 11.32442 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.044854 B = 0.001637 C = 0.001625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.091156 B =17103.066351 C =17231.468965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.006 4.006 3 Si 0.913 3.087 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.290 1.290 7 C -0.228 4.228 8 H 0.078 0.922 9 N -0.593 5.593 10 C 0.184 3.816 11 C -0.180 4.180 12 H 0.104 0.896 13 C -0.179 4.179 14 H 0.101 0.899 15 C 0.155 3.845 16 C 0.092 3.908 17 H 0.134 0.866 18 N -0.695 5.695 19 C 0.519 3.481 20 O -0.541 6.541 21 C -0.138 4.138 22 C 0.077 3.923 23 O -0.383 6.383 24 C 0.091 3.909 25 C -0.180 4.180 26 C 0.063 3.937 27 O -0.383 6.383 28 C 0.063 3.937 29 C -0.154 4.154 30 H 0.254 0.746 31 H 0.026 0.974 32 H 0.091 0.909 33 H 0.052 0.948 34 H 0.027 0.973 35 H 0.400 0.600 36 H 0.102 0.898 37 H 0.101 0.899 38 H 0.058 0.942 39 H 0.060 0.940 40 H 0.064 0.936 41 H 0.081 0.919 42 H 0.077 0.923 43 H 0.052 0.948 44 H 0.098 0.902 45 H 0.053 0.947 46 H 0.100 0.900 47 H 0.081 0.919 48 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.530 -25.540 -7.376 27.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.203 4.203 3 Si 0.743 3.257 4 H -0.203 1.203 5 H -0.216 1.216 6 H -0.217 1.217 7 C -0.356 4.356 8 H 0.095 0.905 9 N -0.317 5.317 10 C 0.058 3.942 11 C -0.202 4.202 12 H 0.122 0.878 13 C -0.200 4.200 14 H 0.119 0.881 15 C 0.028 3.972 16 C -0.014 4.014 17 H 0.151 0.849 18 N -0.344 5.344 19 C 0.305 3.695 20 O -0.418 6.418 21 C -0.178 4.178 22 C 0.000 4.000 23 O -0.302 6.302 24 C 0.033 3.967 25 C -0.218 4.218 26 C -0.014 4.014 27 O -0.302 6.302 28 C -0.014 4.014 29 C -0.191 4.191 30 H 0.065 0.935 31 H 0.044 0.956 32 H 0.109 0.891 33 H 0.070 0.930 34 H 0.045 0.955 35 H 0.234 0.766 36 H 0.120 0.880 37 H 0.120 0.880 38 H 0.077 0.923 39 H 0.078 0.922 40 H 0.082 0.918 41 H 0.100 0.900 42 H 0.096 0.904 43 H 0.071 0.929 44 H 0.116 0.884 45 H 0.071 0.929 46 H 0.118 0.882 47 H 0.100 0.900 48 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -8.865 -25.393 -6.789 27.739 hybrid contribution 0.731 1.221 -0.284 1.451 sum -8.134 -24.172 -7.073 26.467 Atomic orbital electron populations 1.69906 1.05076 1.25374 1.55683 1.24915 0.95649 0.98026 1.01695 0.86034 0.78864 0.83479 0.77292 1.20345 1.21615 1.21654 1.19039 0.90847 0.82264 1.43436 0.90456 1.45192 1.13423 0.99969 1.73082 1.21057 0.86868 0.92508 0.93789 1.25474 1.02375 0.92150 1.00209 0.87779 1.24363 0.90615 1.01927 1.03105 0.88074 1.21134 0.97215 0.85960 0.92918 1.22573 0.99373 0.84298 0.95115 0.84863 1.45349 1.40729 1.26087 1.22206 1.20318 0.79159 0.82923 0.87078 1.90726 1.51254 1.75698 1.24124 1.21460 1.01000 0.95451 0.99938 1.22177 0.97691 0.87368 0.92724 1.87847 1.58714 1.38556 1.45093 1.22068 0.89490 0.90079 0.95075 1.22745 0.99839 0.97776 1.01431 1.22573 0.93165 0.97657 0.87998 1.87946 1.67407 1.33540 1.41264 1.22591 0.93354 0.89893 0.95528 1.22306 0.98950 0.99520 0.98366 0.93547 0.95629 0.89078 0.92961 0.95522 0.76605 0.87959 0.88041 0.92331 0.92222 0.91829 0.90015 0.90436 0.92948 0.88405 0.92917 0.88205 0.90049 0.90015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.79 10.86 55.49 0.60 -26.18 16 2 C -0.01 -0.16 5.40 -17.43 -0.09 -0.25 16 3 Si 0.91 21.82 29.56 -169.99 -5.03 16.80 16 4 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 7 C -0.23 -6.32 10.35 -15.06 -0.16 -6.47 16 8 H 0.08 2.07 7.85 -52.48 -0.41 1.66 16 9 N -0.59 -15.16 3.38 -168.86 -0.57 -15.73 16 10 C 0.18 4.43 5.72 -2.40 -0.01 4.42 16 11 C -0.18 -3.38 7.26 -86.73 -0.63 -4.01 16 12 H 0.10 1.80 8.14 -51.93 -0.42 1.38 16 13 C -0.18 -3.09 6.91 -89.05 -0.62 -3.71 16 14 H 0.10 1.53 8.14 -51.93 -0.42 1.11 16 15 C 0.15 3.22 7.03 -2.41 -0.02 3.20 16 16 C 0.09 1.52 6.19 -65.61 -0.41 1.11 16 17 H 0.13 2.51 7.40 -51.93 -0.38 2.12 16 18 N -0.70 -8.84 5.57 -51.56 -0.29 -9.12 16 19 C 0.52 6.79 7.83 -10.98 -0.09 6.70 16 20 O -0.54 -9.30 15.55 5.56 0.09 -9.22 16 21 C -0.14 -1.27 6.07 -27.88 -0.17 -1.44 16 22 C 0.08 0.77 5.04 37.16 0.19 0.96 16 23 O -0.38 -3.72 10.00 -35.23 -0.35 -4.08 16 24 C 0.09 0.73 2.70 -26.55 -0.07 0.66 16 25 C -0.18 -1.32 5.76 -26.60 -0.15 -1.47 16 26 C 0.06 0.42 6.84 37.20 0.25 0.67 16 27 O -0.38 -3.16 10.77 -35.23 -0.38 -3.54 16 28 C 0.06 0.39 6.84 37.20 0.25 0.64 16 29 C -0.15 -1.05 5.79 -26.59 -0.15 -1.20 16 30 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 31 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.09 2.44 6.51 -51.93 -0.34 2.11 16 33 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.40 3.85 8.83 -40.82 -0.36 3.49 16 36 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.10 0.77 8.14 -51.93 -0.42 0.34 16 38 H 0.06 0.61 7.95 -51.93 -0.41 0.19 16 39 H 0.06 0.63 8.04 -51.93 -0.42 0.21 16 40 H 0.06 0.49 7.79 -51.93 -0.40 0.08 16 41 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.08 0.55 7.99 -51.93 -0.42 0.13 16 43 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 44 H 0.10 0.53 8.14 -51.93 -0.42 0.10 16 45 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 46 H 0.10 0.47 8.14 -51.93 -0.42 0.04 16 47 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 48 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 387.41 15.07 5.84 5.84 Total: -1.00 -33.02 387.41 -10.16 -43.17 By element: Atomic # 1 Polarization: 10.47 SS G_CDS: -8.20 Total: 2.27 kcal Atomic # 6 Polarization: 1.67 SS G_CDS: -1.87 Total: -0.20 kcal Atomic # 7 Polarization: -50.79 SS G_CDS: -0.25 Total: -51.04 kcal Atomic # 8 Polarization: -16.19 SS G_CDS: -0.65 Total: -16.83 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.03 Total: 16.80 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -33.02 -10.16 -43.17 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115098622.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.433 kcal (2) G-P(sol) polarization free energy of solvation -33.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds