Wall clock time and date at job start Tue Mar 31 2020 13:58:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86803 * 120.00110 * 2 1 4 4 H 1.48494 * 109.47343 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47135 * 300.00290 * 3 2 1 6 6 H 1.48503 * 109.46985 * 59.99848 * 3 2 1 7 7 C 1.38816 * 120.00108 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99652 * 189.10980 * 7 2 1 9 9 N 1.36934 * 120.00098 * 9.10877 * 7 2 1 10 10 C 1.48148 * 127.83400 * 15.61670 * 9 7 2 11 11 C 1.54395 * 104.72058 * 140.35611 * 10 9 7 12 12 H 1.09001 * 117.61307 * 244.84684 * 11 10 9 13 13 C 1.54594 * 104.81113 * 23.88886 * 11 10 9 14 14 H 1.08997 * 121.79229 * 223.05602 * 13 11 10 15 15 C 1.48147 * 127.84174 * 195.61562 * 9 7 2 16 16 C 1.53001 * 61.49524 * 114.18169 * 13 11 10 17 17 H 1.09003 * 117.44725 * 251.40294 * 16 13 11 18 18 N 1.46506 * 117.44171 * 106.69528 * 16 13 11 19 19 C 1.34777 * 119.99597 * 155.00244 * 18 16 13 20 20 O 1.21282 * 120.00439 * 0.02562 * 19 18 16 21 21 C 1.50701 * 119.99643 * 179.97438 * 19 18 16 22 22 C 1.52996 * 109.47018 * 179.97438 * 21 19 18 23 23 O 1.42907 * 109.46944 * 179.97438 * 22 21 19 24 24 C 1.42897 * 113.99842 * 179.97438 * 23 22 21 25 25 C 1.53173 * 109.54940 * 269.56081 * 24 23 22 26 26 C 1.53090 * 109.16549 * 183.15375 * 25 24 23 27 27 O 1.42904 * 109.41303 * 57.60783 * 26 25 24 28 28 C 1.42901 * 114.09864 * 298.83939 * 27 26 25 29 29 C 1.53091 * 109.41528 * 61.16221 * 28 27 26 30 30 H 0.96998 * 120.00174 * 359.97438 * 1 2 3 31 31 H 1.08994 * 110.40807 * 259.19206 * 10 9 7 32 32 H 1.08997 * 110.40948 * 21.51643 * 10 9 7 33 33 H 1.09006 * 110.40153 * 338.37019 * 15 9 7 34 34 H 1.08990 * 110.40795 * 100.80074 * 15 9 7 35 35 H 0.96996 * 119.99874 * 335.00154 * 18 16 13 36 36 H 1.09002 * 109.47125 * 300.00147 * 21 19 18 37 37 H 1.08999 * 109.47126 * 60.00162 * 21 19 18 38 38 H 1.09002 * 109.47310 * 300.00055 * 22 21 19 39 39 H 1.08998 * 109.47302 * 60.00592 * 22 21 19 40 40 H 1.09006 * 109.54300 * 29.82904 * 24 23 22 41 41 H 1.09005 * 109.51672 * 303.05972 * 25 24 23 42 42 H 1.08996 * 109.52452 * 63.24331 * 25 24 23 43 43 H 1.08999 * 109.48067 * 297.62333 * 26 25 24 44 44 H 1.09005 * 109.47839 * 177.58679 * 26 25 24 45 45 H 1.08999 * 109.48190 * 301.17759 * 28 27 26 46 46 H 1.09005 * 109.48218 * 181.14545 * 28 27 26 47 47 H 1.08995 * 109.52473 * 182.48686 * 29 28 27 48 48 H 1.08994 * 109.52269 * 62.29258 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7101 1.3464 0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8914 2.3965 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0801 -1.2079 0.1486 9 7 1.3385 -2.3807 -0.1867 10 6 -0.0338 -2.5710 -0.7114 11 6 0.0624 -3.8165 -1.6187 12 1 -0.1160 -3.6796 -2.6853 13 6 1.2867 -4.5979 -1.0890 14 1 2.0185 -5.0440 -1.7623 15 6 1.8192 -3.7545 0.0895 16 6 -0.0990 -5.2323 -0.9534 17 1 -0.5293 -5.2905 0.0465 18 7 -0.4196 -6.3505 -1.8440 19 6 -1.3487 -7.2566 -1.4802 20 8 -1.9197 -7.1460 -0.4159 21 6 -1.6790 -8.4065 -2.3966 22 6 -2.7560 -9.2803 -1.7506 23 8 -3.0696 -10.3705 -2.6198 24 6 -4.0701 -11.2529 -2.1077 25 6 -3.4028 -12.3727 -1.3034 26 6 -4.4748 -13.3557 -0.8255 27 8 -5.1848 -13.8698 -1.9541 28 6 -5.8681 -12.8732 -2.7170 29 6 -4.8522 -11.8709 -3.2709 30 1 -0.4850 0.8400 0.0004 31 1 -0.7319 -2.7497 0.1063 32 1 -0.3430 -1.7015 -1.2912 33 1 2.9088 -3.7785 0.1122 34 1 1.4105 -4.1179 1.0322 35 1 0.0367 -6.4387 -2.6953 36 1 -2.0463 -8.0197 -3.3472 37 1 -0.7829 -9.0028 -2.5688 38 1 -2.3883 -9.6671 -0.8001 39 1 -3.6522 -8.6844 -1.5780 40 1 -4.7521 -10.6967 -1.4644 41 1 -2.6842 -12.8958 -1.9343 42 1 -2.8896 -11.9461 -0.4416 43 1 -5.1700 -12.8412 -0.1622 44 1 -4.0009 -14.1777 -0.2889 45 1 -6.5816 -12.3524 -2.0784 46 1 -6.3982 -13.3476 -3.5429 47 1 -5.3755 -11.0854 -3.8160 48 1 -4.1628 -12.3838 -3.9414 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001115098622.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:58:57 Heat of formation + Delta-G solvation = -98.327701 kcal Electronic energy + Delta-G solvation = -26656.747735 eV Core-core repulsion = 22712.370765 eV Total energy + Delta-G solvation = -3944.376970 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.13784 -40.56984 -39.77926 -38.44037 -36.06128 -34.41721 -33.97611 -32.39860 -32.11279 -31.50185 -28.93784 -27.66474 -25.83309 -24.84661 -24.45318 -23.26311 -21.96755 -21.57582 -21.15757 -20.81104 -18.88046 -18.57972 -17.68656 -17.48964 -17.27259 -16.96120 -16.76591 -16.70424 -15.92958 -15.78387 -15.66030 -15.23001 -15.03797 -14.75728 -14.63835 -14.52224 -14.18347 -13.78593 -13.41777 -13.34268 -13.20783 -12.96782 -12.90447 -12.75432 -12.67168 -12.33292 -12.11344 -12.09966 -12.01786 -11.88614 -11.80817 -11.66514 -11.37331 -11.09467 -10.83936 -10.73545 -10.68066 -10.51116 -9.65650 -8.94032 -7.93202 -5.30444 1.46445 1.46573 1.48219 1.58411 1.78768 2.46659 2.65028 2.78280 2.94616 3.27889 3.53628 3.67394 3.72924 3.75315 3.79509 3.93153 3.96691 4.01669 4.05581 4.12115 4.14347 4.25449 4.36525 4.37873 4.48619 4.52349 4.58041 4.68168 4.75020 4.78772 4.79014 4.83726 4.85712 4.91160 4.98212 5.03647 5.10800 5.19040 5.27239 5.41861 5.44079 5.53405 5.63475 6.14983 6.15174 6.20818 6.49246 6.98626 7.18626 7.65803 8.44094 9.20904 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.044854 B = 0.001637 C = 0.001625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.091156 B =17103.066351 C =17231.468965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.065 4.065 3 Si 0.983 3.017 4 H -0.262 1.262 5 H -0.290 1.290 6 H -0.293 1.293 7 C -0.240 4.240 8 H 0.085 0.915 9 N -0.618 5.618 10 C 0.188 3.812 11 C -0.188 4.188 12 H 0.125 0.875 13 C -0.155 4.155 14 H 0.139 0.861 15 C 0.146 3.854 16 C 0.116 3.884 17 H 0.108 0.892 18 N -0.681 5.681 19 C 0.519 3.481 20 O -0.586 6.586 21 C -0.125 4.125 22 C 0.079 3.921 23 O -0.388 6.388 24 C 0.082 3.918 25 C -0.176 4.176 26 C 0.061 3.939 27 O -0.402 6.402 28 C 0.061 3.939 29 C -0.149 4.149 30 H 0.250 0.750 31 H -0.008 1.008 32 H 0.057 0.943 33 H 0.066 0.934 34 H 0.019 0.981 35 H 0.421 0.579 36 H 0.125 0.875 37 H 0.127 0.873 38 H 0.050 0.950 39 H 0.048 0.952 40 H 0.065 0.935 41 H 0.073 0.927 42 H 0.077 0.923 43 H 0.060 0.940 44 H 0.108 0.892 45 H 0.062 0.938 46 H 0.115 0.885 47 H 0.089 0.911 48 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.489 -27.253 -9.059 29.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.258 4.258 3 Si 0.810 3.190 4 H -0.186 1.186 5 H -0.217 1.217 6 H -0.220 1.220 7 C -0.369 4.369 8 H 0.102 0.898 9 N -0.342 5.342 10 C 0.062 3.938 11 C -0.209 4.209 12 H 0.143 0.857 13 C -0.176 4.176 14 H 0.157 0.843 15 C 0.020 3.980 16 C 0.008 3.992 17 H 0.125 0.875 18 N -0.331 5.331 19 C 0.307 3.693 20 O -0.466 6.466 21 C -0.165 4.165 22 C 0.002 3.998 23 O -0.308 6.308 24 C 0.025 3.975 25 C -0.214 4.214 26 C -0.015 4.015 27 O -0.321 6.321 28 C -0.016 4.016 29 C -0.187 4.187 30 H 0.059 0.941 31 H 0.010 0.990 32 H 0.075 0.925 33 H 0.084 0.916 34 H 0.037 0.963 35 H 0.259 0.741 36 H 0.143 0.857 37 H 0.145 0.855 38 H 0.068 0.932 39 H 0.067 0.933 40 H 0.083 0.917 41 H 0.092 0.908 42 H 0.096 0.904 43 H 0.078 0.922 44 H 0.126 0.874 45 H 0.080 0.920 46 H 0.132 0.868 47 H 0.107 0.893 48 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -7.794 -27.158 -8.510 29.508 hybrid contribution 0.363 1.680 0.311 1.747 sum -7.431 -25.478 -8.200 27.777 Atomic orbital electron populations 1.70113 1.06674 1.25732 1.57199 1.25794 0.96491 1.01474 1.02046 0.84958 0.78357 0.78948 0.76708 1.18628 1.21665 1.22035 1.19455 0.91456 0.83443 1.42537 0.89768 1.45504 1.13788 1.01227 1.73659 1.20770 0.85998 0.93880 0.93189 1.25152 1.04641 0.91000 1.00125 0.85676 1.24257 0.91038 1.00834 1.01475 0.84304 1.21297 0.98117 0.84415 0.94127 1.22079 0.98432 0.84224 0.94460 0.87465 1.45152 1.40845 1.24626 1.22447 1.21022 0.78049 0.83348 0.86836 1.90723 1.52767 1.76778 1.26370 1.21409 1.01863 0.93833 0.99353 1.22096 0.97544 0.87509 0.92683 1.87827 1.59239 1.38575 1.45165 1.22256 0.89414 0.90072 0.95780 1.22702 0.99881 0.97644 1.01200 1.22665 0.93108 0.97941 0.87822 1.87920 1.67723 1.34654 1.41830 1.22735 0.93191 0.89642 0.96020 1.22285 0.98866 0.99734 0.97824 0.94113 0.98968 0.92488 0.91570 0.96343 0.74141 0.85677 0.85463 0.93155 0.93328 0.91667 0.90780 0.90391 0.92165 0.87369 0.92014 0.86752 0.89284 0.90749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.73 10.86 21.65 0.24 -57.49 16 2 C -0.06 -3.68 5.40 84.86 0.46 -3.22 16 3 Si 0.98 45.43 29.56 68.60 2.03 47.46 16 4 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 5 H -0.29 -13.31 7.11 99.48 0.71 -12.61 16 6 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 7 C -0.24 -13.47 10.35 84.03 0.87 -12.60 16 8 H 0.08 4.47 7.85 -2.91 -0.02 4.45 16 9 N -0.62 -32.07 3.38 -688.15 -2.33 -34.39 16 10 C 0.19 9.39 5.72 86.54 0.50 9.88 16 11 C -0.19 -6.88 7.26 -8.27 -0.06 -6.94 16 12 H 0.13 4.07 8.14 -2.39 -0.02 4.05 16 13 C -0.16 -5.01 6.91 -9.78 -0.07 -5.08 16 14 H 0.14 3.52 8.14 -2.39 -0.02 3.51 16 15 C 0.15 6.00 7.03 86.53 0.61 6.60 16 16 C 0.12 3.65 6.19 46.49 0.29 3.93 16 17 H 0.11 4.07 7.40 -2.39 -0.02 4.05 16 18 N -0.68 -15.32 5.57 -435.43 -2.43 -17.75 16 19 C 0.52 12.50 7.83 87.66 0.69 13.18 16 20 O -0.59 -19.93 15.55 -3.04 -0.05 -19.97 16 21 C -0.13 -1.92 6.07 29.85 0.18 -1.74 16 22 C 0.08 1.45 5.04 71.98 0.36 1.81 16 23 O -0.39 -6.89 10.00 -148.98 -1.49 -8.38 16 24 C 0.08 1.23 2.70 30.71 0.08 1.31 16 25 C -0.18 -2.41 5.76 30.68 0.18 -2.24 16 26 C 0.06 0.74 6.84 72.01 0.49 1.23 16 27 O -0.40 -6.15 10.77 -148.98 -1.60 -7.75 16 28 C 0.06 0.65 6.84 72.01 0.49 1.15 16 29 C -0.15 -1.83 5.79 30.69 0.18 -1.65 16 30 H 0.25 14.66 8.31 -92.71 -0.77 13.89 16 31 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 32 H 0.06 3.21 6.51 -2.39 -0.02 3.19 16 33 H 0.07 2.51 8.14 -2.38 -0.02 2.49 16 34 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 35 H 0.42 6.24 8.83 -92.71 -0.82 5.42 16 36 H 0.13 1.44 8.14 -2.39 -0.02 1.42 16 37 H 0.13 1.38 8.14 -2.39 -0.02 1.37 16 38 H 0.05 1.00 7.95 -2.39 -0.02 0.98 16 39 H 0.05 0.99 8.04 -2.39 -0.02 0.98 16 40 H 0.07 0.94 7.79 -2.38 -0.02 0.92 16 41 H 0.07 1.12 8.14 -2.38 -0.02 1.10 16 42 H 0.08 1.04 7.99 -2.39 -0.02 1.02 16 43 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 44 H 0.11 1.04 8.14 -2.38 -0.02 1.02 16 45 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 46 H 0.11 0.87 8.14 -2.38 -0.02 0.85 16 47 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 48 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 Total: -1.00 -74.37 387.41 -0.25 -74.62 By element: Atomic # 1 Polarization: 17.88 SS G_CDS: 0.13 Total: 18.01 kcal Atomic # 6 Polarization: 0.40 SS G_CDS: 5.25 Total: 5.65 kcal Atomic # 7 Polarization: -105.12 SS G_CDS: -4.52 Total: -109.63 kcal Atomic # 8 Polarization: -32.97 SS G_CDS: -3.14 Total: -36.11 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 2.03 Total: 47.46 kcal Total: -74.37 -0.25 -74.62 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115098622.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.705 kcal (2) G-P(sol) polarization free energy of solvation -74.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds