Wall clock time and date at job start Tue Mar 31 2020 13:58:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86804 * 119.99789 * 2 1 4 4 H 1.48497 * 109.47552 * 240.00309 * 3 2 1 5 5 H 1.48503 * 109.47112 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47107 * 120.00019 * 3 2 1 7 7 C 1.37868 * 120.00202 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00088 * 169.99723 * 7 2 1 9 9 C 1.50698 * 120.00083 * 349.98902 * 7 2 1 10 10 C 1.52998 * 115.55381 * 325.15749 * 9 7 2 11 11 N 1.46507 * 109.46883 * 306.41422 * 10 9 7 12 12 C 1.34771 * 119.99624 * 183.79109 * 11 10 9 13 13 O 1.21354 * 120.00446 * 354.28191 * 12 11 10 14 14 C 1.49450 * 119.99952 * 174.27882 * 12 11 10 15 15 O 1.21356 * 119.99682 * 4.98037 * 14 12 11 16 16 N 1.34778 * 120.00518 * 184.97328 * 14 12 11 17 17 C 1.46497 * 120.00288 * 180.02562 * 16 14 12 18 18 C 1.52995 * 109.47214 * 180.02562 * 17 16 14 19 19 C 1.52997 * 109.47327 * 180.02562 * 18 17 16 20 20 C 1.53177 * 109.54149 * 294.55609 * 19 18 17 21 21 C 1.53100 * 109.16604 * 183.15218 * 20 19 18 22 22 O 1.42899 * 109.41220 * 57.60575 * 21 20 19 23 23 C 1.42905 * 114.10019 * 298.84845 * 22 21 20 24 24 C 1.53085 * 109.41850 * 61.15602 * 23 22 21 25 25 C 1.53002 * 117.49905 * 110.82412 * 9 7 2 26 26 C 1.53005 * 117.49831 * 179.48429 * 9 7 2 27 27 H 0.97000 * 120.00173 * 5.03077 * 1 2 3 28 28 H 1.08999 * 109.47604 * 186.41070 * 10 9 7 29 29 H 1.09000 * 109.46710 * 66.40638 * 10 9 7 30 30 H 0.96996 * 119.99858 * 4.05987 * 11 10 9 31 31 H 0.97001 * 119.99192 * 0.02562 * 16 14 12 32 32 H 1.09003 * 109.47190 * 300.00217 * 17 16 14 33 33 H 1.08996 * 109.47325 * 59.99875 * 17 16 14 34 34 H 1.09003 * 109.47191 * 300.00182 * 18 17 16 35 35 H 1.09005 * 109.46942 * 59.99884 * 18 17 16 36 36 H 1.09004 * 109.54451 * 54.81722 * 19 18 17 37 37 H 1.08997 * 109.52544 * 303.05811 * 20 19 18 38 38 H 1.08998 * 109.52712 * 63.24447 * 20 19 18 39 39 H 1.08995 * 109.47725 * 297.62842 * 21 20 19 40 40 H 1.08994 * 109.48096 * 177.59134 * 21 20 19 41 41 H 1.09007 * 109.47632 * 301.16950 * 23 22 21 42 42 H 1.09003 * 109.48578 * 181.15051 * 23 22 21 43 43 H 1.08999 * 109.52524 * 182.48370 * 24 23 22 44 44 H 1.09003 * 109.52171 * 62.30228 * 24 23 22 45 45 H 1.08998 * 117.50481 * 215.00480 * 25 9 7 46 46 H 1.09001 * 117.49673 * 0.02709 * 25 9 7 47 47 H 1.08997 * 117.50128 * 359.97438 * 26 9 7 48 48 H 1.09003 * 117.49406 * 144.97758 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0045 -1.1939 -0.0005 8 1 3.0722 -1.2010 -0.1630 9 6 1.2683 -2.4892 0.2258 10 6 0.0910 -2.4176 1.2002 11 7 0.5407 -1.8363 2.4676 12 6 -0.3120 -1.7449 3.5072 13 8 -1.4785 -2.0473 3.3636 14 6 0.1789 -1.2714 4.8370 15 8 1.3224 -0.8835 4.9586 16 7 -0.6482 -1.2750 5.9011 17 6 -0.1671 -0.8103 7.2044 18 6 -1.2951 -0.9177 8.2324 19 6 -0.7929 -0.4318 9.5934 20 6 0.2983 -1.3776 10.1044 21 6 0.7389 -0.9291 11.5003 22 8 -0.3927 -0.9113 12.3727 23 6 -1.4254 -0.0091 11.9705 24 6 -1.9530 -0.4207 10.5936 25 6 1.1469 -3.4492 -0.9594 26 6 2.0878 -3.7811 0.2015 27 1 -0.4850 0.8368 -0.0737 28 1 -0.2954 -3.4213 1.3777 29 1 -0.6960 -1.7954 0.7741 30 1 1.4510 -1.5135 2.5571 31 1 -1.5621 -1.5853 5.8038 32 1 0.6737 -1.4269 7.5223 33 1 0.1540 0.2282 7.1240 34 1 -2.1362 -0.3014 7.9147 35 1 -1.6158 -1.9564 8.3127 36 1 -0.3873 0.5751 9.4942 37 1 -0.0944 -2.3931 10.1552 38 1 1.1514 -1.3495 9.4266 39 1 1.1687 0.0709 11.4420 40 1 1.4849 -1.6236 11.8866 41 1 -1.0239 1.0030 11.9185 42 1 -2.2386 -0.0407 12.6958 43 1 -2.7099 0.2918 10.2657 44 1 -2.3912 -1.4169 10.6543 45 1 0.2283 -4.0297 -1.0450 46 1 1.5999 -3.1440 -1.9027 47 1 3.1592 -3.6942 0.0215 48 1 1.7882 -4.5798 0.8802 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001117030168.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:58:33 Heat of formation + Delta-G solvation = -111.041992 kcal Electronic energy + Delta-G solvation = -27418.313622 eV Core-core repulsion = 23473.385319 eV Total energy + Delta-G solvation = -3944.928303 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.17731 -39.72874 -38.07165 -36.68690 -36.30232 -34.24787 -33.03483 -32.20110 -31.50178 -29.93725 -26.90982 -25.71753 -25.24243 -23.95519 -22.94065 -21.78501 -21.24468 -20.49855 -19.63538 -19.36274 -17.95349 -16.74426 -16.40881 -16.25719 -16.14057 -15.90216 -15.27438 -15.05682 -15.01157 -14.78071 -14.58549 -14.23038 -13.99876 -13.67766 -13.38826 -12.91854 -12.73587 -12.64487 -12.59641 -12.23167 -11.84393 -11.77385 -11.67093 -11.53495 -11.26549 -11.12300 -11.00517 -10.84206 -10.75104 -10.63044 -10.53633 -10.30339 -9.88602 -9.65983 -9.20329 -9.12293 -8.98011 -8.87041 -8.34900 -8.00715 -6.10569 -4.20702 1.97473 2.83320 3.24725 3.31100 3.34306 3.52344 3.80905 4.15239 4.24147 4.29596 4.32657 4.47903 4.61563 4.78380 4.85785 4.89307 4.97398 5.01772 5.14274 5.21823 5.23450 5.32096 5.36827 5.46063 5.47001 5.51476 5.63158 5.69872 5.74081 5.86589 5.95244 6.00683 6.24060 6.34896 6.48696 6.53363 6.63820 6.82651 6.82982 6.99720 7.19816 7.25822 7.41273 7.49276 7.86527 8.02154 8.26595 8.36780 8.77011 8.80911 9.40918 10.86380 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.019148 B = 0.002342 C = 0.002245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1461.941471 B =11952.556190 C =12466.435205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.075 3.925 3 Si 0.892 3.108 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.500 4.500 8 H 0.063 0.937 9 C 0.035 3.965 10 C 0.158 3.842 11 N -0.650 5.650 12 C 0.493 3.507 13 O -0.546 6.546 14 C 0.507 3.493 15 O -0.522 6.522 16 N -0.710 5.710 17 C 0.117 3.883 18 C -0.126 4.126 19 C -0.086 4.086 20 C -0.156 4.156 21 C 0.060 3.940 22 O -0.385 6.385 23 C 0.060 3.940 24 C -0.151 4.151 25 C -0.193 4.193 26 C -0.211 4.211 27 H 0.265 0.735 28 H 0.033 0.967 29 H 0.116 0.884 30 H 0.413 0.587 31 H 0.411 0.589 32 H 0.071 0.929 33 H 0.069 0.931 34 H 0.074 0.926 35 H 0.073 0.927 36 H 0.076 0.924 37 H 0.074 0.926 38 H 0.079 0.921 39 H 0.050 0.950 40 H 0.094 0.906 41 H 0.050 0.950 42 H 0.093 0.907 43 H 0.075 0.925 44 H 0.073 0.927 45 H 0.067 0.933 46 H 0.081 0.919 47 H 0.077 0.923 48 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.308 -0.850 20.561 20.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C -0.130 4.130 3 Si 0.719 3.281 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.537 4.537 8 H 0.081 0.919 9 C 0.034 3.966 10 C 0.035 3.965 11 N -0.298 5.298 12 C 0.272 3.728 13 O -0.426 6.426 14 C 0.289 3.711 15 O -0.397 6.397 16 N -0.364 5.364 17 C -0.007 4.007 18 C -0.164 4.164 19 C -0.105 4.105 20 C -0.194 4.194 21 C -0.017 4.017 22 O -0.304 6.304 23 C -0.017 4.017 24 C -0.189 4.189 25 C -0.232 4.232 26 C -0.248 4.248 27 H 0.075 0.925 28 H 0.051 0.949 29 H 0.134 0.866 30 H 0.250 0.750 31 H 0.247 0.753 32 H 0.090 0.910 33 H 0.087 0.913 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.094 0.906 37 H 0.092 0.908 38 H 0.097 0.903 39 H 0.069 0.931 40 H 0.112 0.888 41 H 0.068 0.932 42 H 0.111 0.889 43 H 0.093 0.907 44 H 0.092 0.908 45 H 0.086 0.914 46 H 0.099 0.901 47 H 0.096 0.904 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -3.449 -0.774 20.746 21.045 hybrid contribution 0.478 1.053 -0.473 1.250 sum -2.970 0.279 20.273 20.491 Atomic orbital electron populations 1.69809 1.05915 1.27204 1.47690 1.24983 0.94828 0.99206 0.93975 0.86638 0.79754 0.82724 0.78953 1.20156 1.21191 1.19735 1.20462 0.93966 0.88756 1.50489 0.91858 1.19167 0.94034 0.89302 0.94052 1.21215 0.98815 0.95457 0.80985 1.45708 1.15438 1.57320 1.11335 1.19779 0.86545 0.81183 0.85323 1.90684 1.16593 1.50915 1.84452 1.20637 0.85639 0.78862 0.86005 1.90742 1.18189 1.45544 1.85179 1.45740 1.16320 1.65791 1.08585 1.21461 0.97181 1.00474 0.81548 1.21840 0.98145 1.02692 0.93736 1.21125 0.95756 0.99821 0.93808 1.22349 0.99492 1.00263 0.97274 1.22599 0.88224 1.01044 0.89829 1.87933 1.28713 1.63775 1.49981 1.22579 0.90695 0.92555 0.95850 1.22245 0.98138 1.03095 0.95383 1.22929 0.99559 1.06435 0.94284 1.22979 0.97071 1.01816 1.02982 0.92488 0.94923 0.86602 0.75022 0.75283 0.91034 0.91251 0.90755 0.90816 0.90562 0.90751 0.90256 0.93131 0.88820 0.93199 0.88920 0.90655 0.90806 0.91426 0.90066 0.90450 0.91302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.29 10.72 55.43 0.59 -22.70 16 2 C 0.07 1.94 5.13 -17.82 -0.09 1.84 16 3 Si 0.89 20.53 29.55 -169.99 -5.02 15.51 16 4 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 5 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 7 C -0.50 -12.80 8.27 -34.44 -0.28 -13.09 16 8 H 0.06 1.62 7.83 -52.49 -0.41 1.21 16 9 C 0.04 0.83 2.00 -155.66 -0.31 0.52 16 10 C 0.16 3.67 4.73 -4.04 -0.02 3.65 16 11 N -0.65 -14.36 5.27 -60.73 -0.32 -14.68 16 12 C 0.49 10.21 7.88 -11.59 -0.09 10.12 16 13 O -0.55 -12.04 16.50 5.49 0.09 -11.95 16 14 C 0.51 9.16 7.89 -11.58 -0.09 9.06 16 15 O -0.52 -10.49 16.49 5.49 0.09 -10.40 16 16 N -0.71 -9.69 5.55 -60.73 -0.34 -10.03 16 17 C 0.12 1.25 5.44 -4.05 -0.02 1.23 16 18 C -0.13 -0.97 4.80 -26.73 -0.13 -1.10 16 19 C -0.09 -0.60 2.27 -90.44 -0.21 -0.80 16 20 C -0.16 -1.12 5.10 -26.59 -0.14 -1.26 16 21 C 0.06 0.44 6.84 37.21 0.25 0.69 16 22 O -0.39 -3.47 10.77 -35.23 -0.38 -3.85 16 23 C 0.06 0.40 6.84 37.20 0.25 0.66 16 24 C -0.15 -0.96 5.42 -26.60 -0.14 -1.10 16 25 C -0.19 -4.19 9.96 -26.69 -0.27 -4.45 16 26 C -0.21 -4.38 9.92 -26.69 -0.26 -4.64 16 27 H 0.26 6.93 8.32 -40.82 -0.34 6.59 16 28 H 0.03 0.73 8.08 -51.93 -0.42 0.31 16 29 H 0.12 3.04 6.03 -51.93 -0.31 2.73 16 30 H 0.41 9.32 7.40 -40.82 -0.30 9.02 16 31 H 0.41 5.10 7.95 -40.82 -0.32 4.78 16 32 H 0.07 0.78 6.66 -51.93 -0.35 0.43 16 33 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 35 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 36 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.08 0.57 6.75 -51.93 -0.35 0.22 16 39 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 40 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 41 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 42 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.07 1.37 8.14 -51.93 -0.42 0.94 16 46 H 0.08 1.77 8.14 -51.93 -0.42 1.34 16 47 H 0.08 1.57 8.14 -51.93 -0.42 1.14 16 48 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 LS Contribution 389.83 15.07 5.87 5.87 Total: -1.00 -29.40 389.83 -8.90 -38.30 By element: Atomic # 1 Polarization: 20.54 SS G_CDS: -7.94 Total: 12.59 kcal Atomic # 6 Polarization: 2.87 SS G_CDS: -1.55 Total: 1.33 kcal Atomic # 7 Polarization: -47.34 SS G_CDS: -0.06 Total: -47.40 kcal Atomic # 8 Polarization: -26.00 SS G_CDS: -0.20 Total: -26.20 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -29.40 -8.90 -38.30 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117030168.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.742 kcal (2) G-P(sol) polarization free energy of solvation -29.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds