Wall clock time and date at job start Tue Mar 31 2020 13:58:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86804 * 119.99789 * 2 1 4 4 H 1.48497 * 109.47552 * 240.00309 * 3 2 1 5 5 H 1.48503 * 109.47112 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47107 * 120.00019 * 3 2 1 7 7 C 1.37868 * 120.00202 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00088 * 169.99723 * 7 2 1 9 9 C 1.50698 * 120.00083 * 349.98902 * 7 2 1 10 10 C 1.52998 * 115.55381 * 325.15749 * 9 7 2 11 11 N 1.46507 * 109.46883 * 306.41422 * 10 9 7 12 12 C 1.34771 * 119.99624 * 183.79109 * 11 10 9 13 13 O 1.21354 * 120.00446 * 354.28191 * 12 11 10 14 14 C 1.49450 * 119.99952 * 174.27882 * 12 11 10 15 15 O 1.21356 * 119.99682 * 4.98037 * 14 12 11 16 16 N 1.34778 * 120.00518 * 184.97328 * 14 12 11 17 17 C 1.46497 * 120.00288 * 180.02562 * 16 14 12 18 18 C 1.52995 * 109.47214 * 180.02562 * 17 16 14 19 19 C 1.52997 * 109.47327 * 180.02562 * 18 17 16 20 20 C 1.53177 * 109.54149 * 294.55609 * 19 18 17 21 21 C 1.53100 * 109.16604 * 183.15218 * 20 19 18 22 22 O 1.42899 * 109.41220 * 57.60575 * 21 20 19 23 23 C 1.42905 * 114.10019 * 298.84845 * 22 21 20 24 24 C 1.53085 * 109.41850 * 61.15602 * 23 22 21 25 25 C 1.53002 * 117.49905 * 110.82412 * 9 7 2 26 26 C 1.53005 * 117.49831 * 179.48429 * 9 7 2 27 27 H 0.97000 * 120.00173 * 5.03077 * 1 2 3 28 28 H 1.08999 * 109.47604 * 186.41070 * 10 9 7 29 29 H 1.09000 * 109.46710 * 66.40638 * 10 9 7 30 30 H 0.96996 * 119.99858 * 4.05987 * 11 10 9 31 31 H 0.97001 * 119.99192 * 0.02562 * 16 14 12 32 32 H 1.09003 * 109.47190 * 300.00217 * 17 16 14 33 33 H 1.08996 * 109.47325 * 59.99875 * 17 16 14 34 34 H 1.09003 * 109.47191 * 300.00182 * 18 17 16 35 35 H 1.09005 * 109.46942 * 59.99884 * 18 17 16 36 36 H 1.09004 * 109.54451 * 54.81722 * 19 18 17 37 37 H 1.08997 * 109.52544 * 303.05811 * 20 19 18 38 38 H 1.08998 * 109.52712 * 63.24447 * 20 19 18 39 39 H 1.08995 * 109.47725 * 297.62842 * 21 20 19 40 40 H 1.08994 * 109.48096 * 177.59134 * 21 20 19 41 41 H 1.09007 * 109.47632 * 301.16950 * 23 22 21 42 42 H 1.09003 * 109.48578 * 181.15051 * 23 22 21 43 43 H 1.08999 * 109.52524 * 182.48370 * 24 23 22 44 44 H 1.09003 * 109.52171 * 62.30228 * 24 23 22 45 45 H 1.08998 * 117.50481 * 215.00480 * 25 9 7 46 46 H 1.09001 * 117.49673 * 0.02709 * 25 9 7 47 47 H 1.08997 * 117.50128 * 359.97438 * 26 9 7 48 48 H 1.09003 * 117.49406 * 144.97758 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0045 -1.1939 -0.0005 8 1 3.0722 -1.2010 -0.1630 9 6 1.2683 -2.4892 0.2258 10 6 0.0910 -2.4176 1.2002 11 7 0.5407 -1.8363 2.4676 12 6 -0.3120 -1.7449 3.5072 13 8 -1.4785 -2.0473 3.3636 14 6 0.1789 -1.2714 4.8370 15 8 1.3224 -0.8835 4.9586 16 7 -0.6482 -1.2750 5.9011 17 6 -0.1671 -0.8103 7.2044 18 6 -1.2951 -0.9177 8.2324 19 6 -0.7929 -0.4318 9.5934 20 6 0.2983 -1.3776 10.1044 21 6 0.7389 -0.9291 11.5003 22 8 -0.3927 -0.9113 12.3727 23 6 -1.4254 -0.0091 11.9705 24 6 -1.9530 -0.4207 10.5936 25 6 1.1469 -3.4492 -0.9594 26 6 2.0878 -3.7811 0.2015 27 1 -0.4850 0.8368 -0.0737 28 1 -0.2954 -3.4213 1.3777 29 1 -0.6960 -1.7954 0.7741 30 1 1.4510 -1.5135 2.5571 31 1 -1.5621 -1.5853 5.8038 32 1 0.6737 -1.4269 7.5223 33 1 0.1540 0.2282 7.1240 34 1 -2.1362 -0.3014 7.9147 35 1 -1.6158 -1.9564 8.3127 36 1 -0.3873 0.5751 9.4942 37 1 -0.0944 -2.3931 10.1552 38 1 1.1514 -1.3495 9.4266 39 1 1.1687 0.0709 11.4420 40 1 1.4849 -1.6236 11.8866 41 1 -1.0239 1.0030 11.9185 42 1 -2.2386 -0.0407 12.6958 43 1 -2.7099 0.2918 10.2657 44 1 -2.3912 -1.4169 10.6543 45 1 0.2283 -4.0297 -1.0450 46 1 1.5999 -3.1440 -1.9027 47 1 3.1592 -3.6942 0.0215 48 1 1.7882 -4.5798 0.8802 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001117030168.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:58:32 Heat of formation + Delta-G solvation = -130.472224 kcal Electronic energy + Delta-G solvation = -27419.156180 eV Core-core repulsion = 23473.385319 eV Total energy + Delta-G solvation = -3945.770861 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.58781 -40.41862 -39.61780 -38.43919 -37.21586 -35.35207 -34.60761 -34.14303 -32.02857 -30.79940 -28.52557 -27.52254 -26.35338 -24.57560 -24.09471 -22.95083 -22.64177 -21.35523 -21.21003 -20.79487 -19.52329 -18.08663 -17.85033 -17.17572 -17.09872 -16.91982 -16.69273 -16.37020 -16.21704 -16.09570 -15.60404 -15.43651 -15.32309 -14.80669 -14.66294 -14.36459 -14.25156 -13.63788 -13.43067 -13.37698 -13.22221 -12.92949 -12.88853 -12.71854 -12.71621 -12.46779 -12.32617 -12.20632 -12.05563 -11.84209 -11.44947 -11.32916 -11.17419 -11.09536 -10.71862 -10.59870 -10.42342 -10.29523 -10.17959 -9.81113 -8.05971 -6.20768 0.44219 1.40273 1.44968 1.46881 1.49691 2.23944 2.39292 2.77484 3.00317 3.05113 3.55797 3.61105 3.69152 3.73615 3.88070 4.08138 4.18184 4.20317 4.21947 4.36497 4.48857 4.49526 4.51502 4.60803 4.70403 4.75262 4.77512 4.82746 4.84770 4.91453 4.97088 5.01755 5.07094 5.08182 5.16965 5.23024 5.23994 5.27004 5.45044 5.48504 5.56139 5.59296 5.89702 6.04362 6.29622 6.34551 6.53760 6.78660 6.86011 7.11600 7.42118 8.88331 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.019148 B = 0.002342 C = 0.002245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1461.941471 B =11952.556190 C =12466.435205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.038 3.962 3 Si 0.941 3.059 4 H -0.271 1.271 5 H -0.289 1.289 6 H -0.273 1.273 7 C -0.508 4.508 8 H 0.057 0.943 9 C 0.003 3.997 10 C 0.169 3.831 11 N -0.655 5.655 12 C 0.489 3.511 13 O -0.562 6.562 14 C 0.511 3.489 15 O -0.546 6.546 16 N -0.689 5.689 17 C 0.114 3.886 18 C -0.116 4.116 19 C -0.084 4.084 20 C -0.155 4.155 21 C 0.056 3.944 22 O -0.407 6.407 23 C 0.054 3.946 24 C -0.147 4.147 25 C -0.191 4.191 26 C -0.187 4.187 27 H 0.260 0.740 28 H 0.040 0.960 29 H 0.084 0.916 30 H 0.410 0.590 31 H 0.419 0.581 32 H 0.073 0.927 33 H 0.066 0.934 34 H 0.083 0.917 35 H 0.080 0.920 36 H 0.078 0.922 37 H 0.069 0.931 38 H 0.078 0.922 39 H 0.056 0.944 40 H 0.099 0.901 41 H 0.056 0.944 42 H 0.103 0.897 43 H 0.087 0.913 44 H 0.070 0.930 45 H 0.080 0.920 46 H 0.076 0.924 47 H 0.082 0.918 48 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.316 -0.977 21.795 22.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.164 4.164 3 Si 0.767 3.233 4 H -0.196 1.196 5 H -0.214 1.214 6 H -0.198 1.198 7 C -0.545 4.545 8 H 0.076 0.924 9 C 0.002 3.998 10 C 0.046 3.954 11 N -0.303 5.303 12 C 0.270 3.730 13 O -0.443 6.443 14 C 0.291 3.709 15 O -0.424 6.424 16 N -0.342 5.342 17 C -0.008 4.008 18 C -0.154 4.154 19 C -0.103 4.103 20 C -0.192 4.192 21 C -0.020 4.020 22 O -0.326 6.326 23 C -0.022 4.022 24 C -0.184 4.184 25 C -0.229 4.229 26 C -0.225 4.225 27 H 0.070 0.930 28 H 0.058 0.942 29 H 0.102 0.898 30 H 0.246 0.754 31 H 0.256 0.744 32 H 0.092 0.908 33 H 0.085 0.915 34 H 0.101 0.899 35 H 0.098 0.902 36 H 0.097 0.903 37 H 0.088 0.912 38 H 0.097 0.903 39 H 0.074 0.926 40 H 0.117 0.883 41 H 0.074 0.926 42 H 0.121 0.879 43 H 0.106 0.894 44 H 0.088 0.912 45 H 0.099 0.901 46 H 0.095 0.905 47 H 0.101 0.899 48 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -3.478 -0.910 22.006 22.298 hybrid contribution 0.457 1.053 -0.817 1.409 sum -3.021 0.143 21.189 21.403 Atomic orbital electron populations 1.69953 1.06804 1.27225 1.48912 1.25518 0.95359 1.01499 0.94055 0.85867 0.78666 0.79880 0.78863 1.19648 1.21445 1.19804 1.20666 0.93813 0.89978 1.50066 0.92435 1.19240 0.95181 0.89760 0.95585 1.20926 0.97951 0.95091 0.81451 1.45688 1.15442 1.57723 1.11455 1.20285 0.86142 0.80418 0.86186 1.90664 1.17171 1.51480 1.84997 1.20134 0.85714 0.79233 0.85801 1.90735 1.19117 1.47176 1.85338 1.45746 1.16035 1.63880 1.08533 1.21703 0.98527 1.00138 0.80469 1.21782 0.97129 1.03401 0.93047 1.21112 0.95992 0.99792 0.93402 1.22325 0.99549 1.00086 0.97269 1.22681 0.88064 1.01565 0.89681 1.87904 1.29489 1.64467 1.50784 1.22733 0.90608 0.92512 0.96337 1.22208 0.98007 1.03269 0.94933 1.22935 1.00472 1.05642 0.93868 1.22982 0.97064 1.00252 1.02156 0.93020 0.94155 0.89769 0.75395 0.74361 0.90839 0.91535 0.89887 0.90179 0.90325 0.91194 0.90343 0.92597 0.88300 0.92586 0.87908 0.89409 0.91160 0.90105 0.90530 0.89917 0.89418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -48.37 10.72 21.44 0.23 -48.14 16 2 C 0.04 1.96 5.13 84.65 0.43 2.39 16 3 Si 0.94 42.20 29.55 68.60 2.03 44.23 16 4 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 5 H -0.29 -12.96 7.11 99.48 0.71 -12.25 16 6 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 7 C -0.51 -25.99 8.27 25.60 0.21 -25.78 16 8 H 0.06 2.94 7.83 -2.91 -0.02 2.92 16 9 C 0.00 0.14 2.00 -52.93 -0.11 0.03 16 10 C 0.17 7.88 4.73 86.38 0.41 8.29 16 11 N -0.66 -29.04 5.27 -464.40 -2.45 -31.49 16 12 C 0.49 20.21 7.88 87.27 0.69 20.89 16 13 O -0.56 -24.65 16.50 -3.26 -0.05 -24.70 16 14 C 0.51 18.08 7.89 87.27 0.69 18.77 16 15 O -0.55 -21.70 16.49 -3.27 -0.05 -21.75 16 16 N -0.69 -17.81 5.55 -464.42 -2.58 -20.39 16 17 C 0.11 2.24 5.44 86.38 0.47 2.71 16 18 C -0.12 -1.52 4.80 30.59 0.15 -1.37 16 19 C -0.08 -1.00 2.27 -10.68 -0.02 -1.02 16 20 C -0.15 -2.00 5.10 30.69 0.16 -1.84 16 21 C 0.06 0.76 6.84 72.02 0.49 1.25 16 22 O -0.41 -6.82 10.77 -148.98 -1.60 -8.42 16 23 C 0.05 0.64 6.84 72.01 0.49 1.13 16 24 C -0.15 -1.55 5.42 30.68 0.17 -1.38 16 25 C -0.19 -8.02 9.96 30.62 0.30 -7.72 16 26 C -0.19 -7.43 9.92 30.62 0.30 -7.12 16 27 H 0.26 13.83 8.32 -92.71 -0.77 13.06 16 28 H 0.04 1.78 8.08 -2.39 -0.02 1.76 16 29 H 0.08 4.51 6.03 -2.39 -0.01 4.49 16 30 H 0.41 18.62 7.40 -92.71 -0.69 17.93 16 31 H 0.42 9.68 7.95 -92.71 -0.74 8.94 16 32 H 0.07 1.47 6.66 -2.39 -0.02 1.46 16 33 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.08 0.99 8.14 -2.38 -0.02 0.97 16 36 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 37 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 38 H 0.08 1.02 6.75 -2.39 -0.02 1.00 16 39 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 40 H 0.10 1.16 8.14 -2.39 -0.02 1.15 16 41 H 0.06 0.58 8.14 -2.38 -0.02 0.56 16 42 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 43 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 44 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 45 H 0.08 3.15 8.14 -2.39 -0.02 3.13 16 46 H 0.08 3.26 8.14 -2.39 -0.02 3.24 16 47 H 0.08 3.18 8.14 -2.39 -0.02 3.16 16 48 H 0.09 3.14 8.14 -2.39 -0.02 3.12 16 Total: -1.00 -62.01 389.83 -0.10 -62.11 By element: Atomic # 1 Polarization: 39.78 SS G_CDS: -0.45 Total: 39.32 kcal Atomic # 6 Polarization: 4.40 SS G_CDS: 4.83 Total: 9.24 kcal Atomic # 7 Polarization: -95.22 SS G_CDS: -4.79 Total: -100.02 kcal Atomic # 8 Polarization: -53.17 SS G_CDS: -1.71 Total: -54.88 kcal Atomic # 14 Polarization: 42.20 SS G_CDS: 2.03 Total: 44.23 kcal Total: -62.01 -0.10 -62.11 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117030168.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.362 kcal (2) G-P(sol) polarization free energy of solvation -62.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds