Wall clock time and date at job start Tue Mar 31 2020 14:10:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.99765 * 2 1 4 4 O 1.42903 * 109.47214 * 300.35718 * 3 2 1 5 5 C 1.54326 * 109.78058 * 121.16758 * 2 1 3 6 6 C 1.55153 * 103.02267 * 97.49668 * 5 2 1 7 7 C 1.54905 * 101.58272 * 35.30594 * 6 5 2 8 8 N 1.47027 * 109.88082 * 238.90543 * 2 1 3 9 9 C 1.34774 * 125.64610 * 59.55825 * 8 2 1 10 10 O 1.21351 * 120.00381 * 359.71729 * 9 8 2 11 11 C 1.49449 * 119.99858 * 179.71718 * 9 8 2 12 12 O 1.21347 * 120.00053 * 353.56213 * 11 9 8 13 13 N 1.34780 * 119.99963 * 173.55691 * 11 9 8 14 14 C 1.46919 * 120.62967 * 351.20231 * 13 11 9 15 15 C 1.53198 * 108.77635 * 233.62211 * 14 13 11 16 16 C 1.53032 * 109.31480 * 305.37252 * 15 14 13 17 17 C 1.53348 * 109.61093 * 61.36569 * 16 15 14 18 18 H 1.08997 * 109.47415 * 58.55145 * 17 16 15 19 19 C 1.50710 * 109.68536 * 178.74848 * 17 16 15 20 20 H 1.07993 * 120.00041 * 34.79944 * 19 17 16 21 21 C 1.37878 * 119.99719 * 214.79565 * 19 17 16 22 22 N 1.31514 * 119.99598 * 184.79231 * 21 19 17 23 23 Si 1.86798 * 120.00234 * 4.80143 * 21 19 17 24 24 H 1.48501 * 109.47438 * 84.96720 * 23 21 19 25 25 H 1.48498 * 109.47077 * 204.96498 * 23 21 19 26 26 H 1.48500 * 109.47004 * 324.96541 * 23 21 19 27 27 C 1.46924 * 120.62776 * 171.21975 * 13 11 9 28 28 H 1.09000 * 109.46982 * 179.64640 * 1 2 3 29 29 H 1.09001 * 109.46510 * 299.64133 * 1 2 3 30 30 H 1.08996 * 109.47222 * 59.64145 * 1 2 3 31 31 H 1.08995 * 109.47541 * 60.35953 * 3 2 1 32 32 H 1.08998 * 109.47227 * 180.36229 * 3 2 1 33 33 H 0.96699 * 114.00082 * 179.97438 * 4 3 2 34 34 H 1.09001 * 110.85127 * 339.02119 * 5 2 1 35 35 H 1.09007 * 110.66838 * 215.87764 * 5 2 1 36 36 H 1.08999 * 111.00497 * 277.23008 * 6 5 2 37 37 H 1.09009 * 111.00456 * 153.38118 * 6 5 2 38 38 H 1.09004 * 110.36502 * 204.15320 * 7 6 5 39 39 H 1.09001 * 110.46153 * 81.87914 * 7 6 5 40 40 H 1.08999 * 109.59055 * 353.41335 * 14 13 11 41 41 H 1.09009 * 109.58894 * 113.70074 * 14 13 11 42 42 H 1.09007 * 109.49160 * 65.31861 * 15 14 13 43 43 H 1.09000 * 109.49971 * 185.37876 * 15 14 13 44 44 H 1.09000 * 109.46585 * 181.38084 * 16 15 14 45 45 H 1.09007 * 109.46055 * 301.35264 * 16 15 14 46 46 H 0.97006 * 119.99677 * 180.02562 * 22 21 19 47 47 H 1.09008 * 109.58798 * 246.15767 * 27 13 11 48 48 H 1.08997 * 109.59390 * 6.44213 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0533 1.4377 0.0000 4 8 1.5763 2.1182 -1.1626 5 6 2.0523 -0.7516 1.2426 6 6 2.3562 -2.1697 0.6913 7 6 2.8613 -1.8465 -0.7370 8 7 2.0300 -0.7141 -1.1840 9 6 1.7753 -0.3844 -2.4657 10 8 1.0742 0.5734 -2.7181 11 6 2.3563 -1.1985 -3.5762 12 8 3.1497 -2.0829 -3.3294 13 7 1.9990 -0.9504 -4.8519 14 6 0.9029 -0.0202 -5.1549 15 6 -0.1118 -0.7306 -6.0564 16 6 0.6058 -1.2801 -7.2913 17 6 1.6657 -2.3006 -6.8591 18 1 1.1881 -3.1072 -6.3031 19 6 2.3525 -2.8654 -8.0760 20 1 2.5245 -2.2388 -8.9386 21 6 2.7613 -4.1821 -8.0878 22 7 3.4435 -4.6496 -9.1103 23 14 2.3459 -5.3021 -6.6516 24 1 0.9873 -5.8700 -6.8435 25 1 3.3378 -6.4049 -6.5809 26 1 2.3824 -4.5217 -5.3887 27 6 2.6980 -1.6054 -5.9659 28 1 -0.3633 -1.0277 -0.0063 29 1 -0.3632 0.5083 0.8932 30 1 -0.3633 0.5194 -0.8867 31 1 1.7000 1.9530 0.8931 32 1 3.1432 1.4278 -0.0065 33 1 1.8694 3.0374 -1.2282 34 1 1.2886 -0.7951 2.0191 35 1 2.9602 -0.2828 1.6224 36 1 1.4523 -2.7778 0.6578 37 1 3.1329 -2.6592 1.2790 38 1 2.7177 -2.7049 -1.3933 39 1 3.9126 -1.5594 -0.7135 40 1 0.4170 0.2862 -4.2285 41 1 1.2988 0.8567 -5.6673 42 1 -0.5729 -1.5522 -5.5080 43 1 -0.8809 -0.0233 -6.3665 44 1 -0.1180 -1.7648 -7.9464 45 1 1.0878 -0.4612 -7.8256 46 1 3.7308 -5.5761 -9.1188 47 1 3.2400 -0.8589 -6.5467 48 1 3.3986 -2.3431 -5.5747 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118449172.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:10:12 Heat of formation + Delta-G solvation = -120.743673 kcal Electronic energy + Delta-G solvation = -29947.979232 eV Core-core repulsion = 26002.630232 eV Total energy + Delta-G solvation = -3945.349000 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.14612 -40.63139 -38.70194 -38.56766 -37.07240 -35.23192 -33.64718 -33.05361 -32.31302 -32.14940 -27.78270 -27.63993 -26.97514 -26.06898 -24.73214 -23.45711 -22.89904 -21.67775 -20.54641 -19.64497 -19.04455 -18.20320 -17.91803 -17.80478 -17.42674 -16.84646 -16.55999 -16.23029 -15.58847 -15.48935 -15.35850 -15.03373 -14.93271 -14.74319 -14.45051 -14.36063 -14.09013 -13.85444 -13.75782 -13.47658 -13.34428 -13.09256 -13.06449 -12.88894 -12.72684 -12.56576 -12.34336 -12.04712 -11.99745 -11.72795 -11.69148 -11.55452 -11.53223 -11.27501 -11.12665 -10.77420 -10.75662 -10.01842 -9.73176 -9.59252 -8.36561 -6.39600 0.44479 1.23727 1.27999 1.31660 1.42697 2.18304 2.28046 2.40479 3.00969 3.15849 3.28310 3.61581 3.73910 3.98508 4.02229 4.13009 4.15911 4.20320 4.22950 4.43170 4.44665 4.47141 4.52791 4.57131 4.66318 4.68715 4.77236 4.83083 4.90573 4.92122 4.92768 4.99375 5.03825 5.05844 5.10577 5.18783 5.24868 5.26729 5.36544 5.51933 5.52926 5.57897 5.66954 6.14461 6.25443 6.34494 6.66766 6.74669 6.99559 7.05630 7.27223 8.79670 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.018123 B = 0.004086 C = 0.003590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1544.616403 B = 6851.470844 C = 7797.159422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.152 3.848 3 C 0.068 3.932 4 O -0.560 6.560 5 C -0.112 4.112 6 C -0.124 4.124 7 C 0.091 3.909 8 N -0.584 5.584 9 C 0.520 3.480 10 O -0.476 6.476 11 C 0.487 3.513 12 O -0.558 6.558 13 N -0.579 5.579 14 C 0.076 3.924 15 C -0.127 4.127 16 C -0.103 4.103 17 C 0.007 3.993 18 H 0.023 0.977 19 C -0.512 4.512 20 H 0.045 0.955 21 C 0.025 3.975 22 N -0.939 5.939 23 Si 0.931 3.069 24 H -0.264 1.264 25 H -0.285 1.285 26 H -0.265 1.265 27 C 0.121 3.879 28 H 0.051 0.949 29 H 0.088 0.912 30 H 0.052 0.948 31 H 0.080 0.920 32 H 0.042 0.958 33 H 0.379 0.621 34 H 0.112 0.888 35 H 0.096 0.904 36 H 0.077 0.923 37 H 0.110 0.890 38 H 0.067 0.933 39 H 0.070 0.930 40 H 0.139 0.861 41 H 0.073 0.927 42 H 0.052 0.948 43 H 0.101 0.899 44 H 0.056 0.944 45 H 0.057 0.943 46 H 0.267 0.733 47 H 0.066 0.934 48 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.794 12.435 26.281 29.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.068 3.932 3 C -0.010 4.010 4 O -0.366 6.366 5 C -0.149 4.149 6 C -0.162 4.162 7 C -0.032 4.032 8 N -0.319 5.319 9 C 0.303 3.697 10 O -0.351 6.351 11 C 0.270 3.730 12 O -0.437 6.437 13 N -0.311 5.311 14 C -0.044 4.044 15 C -0.165 4.165 16 C -0.141 4.141 17 C -0.013 4.013 18 H 0.041 0.959 19 C -0.550 4.550 20 H 0.063 0.937 21 C -0.173 4.173 22 N -0.579 5.579 23 Si 0.756 3.244 24 H -0.189 1.189 25 H -0.211 1.211 26 H -0.189 1.189 27 C -0.001 4.001 28 H 0.070 0.930 29 H 0.107 0.893 30 H 0.071 0.929 31 H 0.098 0.902 32 H 0.060 0.940 33 H 0.227 0.773 34 H 0.130 0.870 35 H 0.115 0.885 36 H 0.096 0.904 37 H 0.128 0.872 38 H 0.086 0.914 39 H 0.088 0.912 40 H 0.155 0.845 41 H 0.092 0.908 42 H 0.071 0.929 43 H 0.120 0.880 44 H 0.075 0.925 45 H 0.076 0.924 46 H 0.076 0.924 47 H 0.084 0.916 48 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -5.974 11.790 25.985 29.153 hybrid contribution 0.773 -0.519 -0.397 1.012 sum -5.201 11.271 25.588 28.440 Atomic orbital electron populations 1.22036 0.93371 1.01859 1.03400 1.21566 0.95433 0.91383 0.84777 1.22624 0.97110 0.91771 0.89535 1.86937 1.76437 1.29311 1.43914 1.22733 1.03463 0.94175 0.94556 1.22833 1.02840 0.97412 0.93144 1.22662 0.94707 0.88695 0.97088 1.48435 1.49247 1.30482 1.03777 1.19452 0.82332 0.84921 0.83014 1.90505 1.36532 1.26946 1.81096 1.20745 0.83037 0.84327 0.84847 1.90667 1.36938 1.32600 1.83536 1.48398 1.34444 1.43654 1.04623 1.22900 0.86940 0.90747 1.03852 1.21968 0.98039 1.00483 0.96025 1.21559 0.97365 0.97999 0.97135 1.19462 0.93508 0.94830 0.93462 0.95884 1.21154 1.37570 0.96097 1.00228 0.93687 1.25769 0.94112 0.99641 0.97801 1.70018 1.38718 1.16360 1.32792 0.85974 0.78636 0.78834 0.80907 1.18855 1.21147 1.18917 1.22089 0.95925 0.96144 0.85911 0.92960 0.89303 0.92931 0.90160 0.93992 0.77315 0.86953 0.88520 0.90448 0.87180 0.91445 0.91200 0.84451 0.90822 0.92918 0.88045 0.92502 0.92433 0.92351 0.91581 0.92717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.72 8.22 71.98 0.59 -2.12 16 2 C 0.15 2.71 0.80 3.95 0.00 2.71 16 3 C 0.07 1.09 6.00 71.98 0.43 1.52 16 4 O -0.56 -11.90 9.43 -125.61 -1.18 -13.08 16 5 C -0.11 -1.14 6.02 31.78 0.19 -0.95 16 6 C -0.12 -1.68 7.09 31.98 0.23 -1.45 16 7 C 0.09 2.12 5.97 86.85 0.52 2.64 16 8 N -0.58 -15.13 2.82 -766.80 -2.16 -17.29 16 9 C 0.52 16.95 7.23 87.27 0.63 17.58 16 10 O -0.48 -15.44 8.93 20.12 0.18 -15.26 16 11 C 0.49 19.11 7.68 87.27 0.67 19.78 16 12 O -0.56 -24.45 13.32 -3.24 -0.04 -24.50 16 13 N -0.58 -22.93 2.97 -820.47 -2.44 -25.37 16 14 C 0.08 2.49 5.98 86.37 0.52 3.01 16 15 C -0.13 -4.05 6.08 30.67 0.19 -3.87 16 16 C -0.10 -4.05 5.17 30.72 0.16 -3.89 16 17 C 0.01 0.34 1.92 -11.36 -0.02 0.32 16 18 H 0.02 1.15 5.30 -2.39 -0.01 1.14 16 19 C -0.51 -29.36 8.88 25.60 0.23 -29.13 16 20 H 0.04 2.80 8.06 -2.91 -0.02 2.77 16 21 C 0.03 1.50 5.47 84.65 0.46 1.97 16 22 N -0.94 -59.10 13.96 21.45 0.30 -58.80 16 23 Si 0.93 47.16 26.99 68.60 1.85 49.01 16 24 H -0.26 -12.68 7.11 99.48 0.71 -11.97 16 25 H -0.29 -14.19 7.11 99.48 0.71 -13.49 16 26 H -0.26 -13.59 6.82 99.48 0.68 -12.92 16 27 C 0.12 5.56 5.70 86.36 0.49 6.05 16 28 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.05 1.30 6.33 -2.39 -0.02 1.29 16 31 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.04 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.38 5.12 9.12 -74.06 -0.68 4.45 16 34 H 0.11 0.65 7.83 -2.39 -0.02 0.63 16 35 H 0.10 0.70 7.85 -2.38 -0.02 0.68 16 36 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.11 1.00 8.14 -2.38 -0.02 0.98 16 38 H 0.07 2.01 6.35 -2.38 -0.02 2.00 16 39 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 40 H 0.14 4.40 4.32 -47.57 -0.21 4.20 16 41 H 0.07 2.26 8.14 -2.38 -0.02 2.24 16 42 H 0.05 1.73 8.14 -2.38 -0.02 1.71 16 43 H 0.10 2.56 8.14 -2.39 -0.02 2.54 16 44 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 45 H 0.06 2.21 8.14 -2.38 -0.02 2.19 16 46 H 0.27 15.80 8.31 -92.70 -0.77 15.03 16 47 H 0.07 2.97 8.14 -2.38 -0.02 2.95 16 48 H 0.05 2.79 7.01 -2.39 -0.02 2.77 16 Total: -1.00 -75.44 363.95 1.86 -73.58 By element: Atomic # 1 Polarization: 17.46 SS G_CDS: 0.07 Total: 17.53 kcal Atomic # 6 Polarization: 8.88 SS G_CDS: 5.29 Total: 14.16 kcal Atomic # 7 Polarization: -97.16 SS G_CDS: -4.30 Total: -101.46 kcal Atomic # 8 Polarization: -51.79 SS G_CDS: -1.05 Total: -52.83 kcal Atomic # 14 Polarization: 47.16 SS G_CDS: 1.85 Total: 49.01 kcal Total: -75.44 1.86 -73.58 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118449172.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.160 kcal (2) G-P(sol) polarization free energy of solvation -75.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds