Wall clock time and date at job start Tue Mar 31 2020 13:36:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 119.99748 * 2 1 4 4 H 1.48496 * 109.47224 * 269.99974 * 3 2 1 5 5 H 1.48500 * 109.47111 * 30.00177 * 3 2 1 6 6 H 1.48507 * 109.47170 * 150.00136 * 3 2 1 7 7 C 1.37878 * 120.00380 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99909 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99701 * 359.97438 * 7 2 1 10 10 H 1.09002 * 109.52106 * 59.92768 * 9 7 2 11 11 C 1.53039 * 109.49595 * 180.02562 * 9 7 2 12 12 C 1.53040 * 109.53967 * 181.32111 * 11 9 7 13 13 C 1.53197 * 109.31120 * 298.63774 * 12 11 9 14 14 N 1.46925 * 108.77651 * 54.63208 * 13 12 11 15 15 C 1.34770 * 120.62937 * 126.37008 * 14 13 12 16 16 O 1.21349 * 120.00098 * 178.00885 * 15 14 13 17 17 C 1.49455 * 120.00297 * 358.00759 * 15 14 13 18 18 O 1.21349 * 119.99721 * 6.63758 * 17 15 14 19 19 N 1.34775 * 119.99962 * 186.63217 * 17 15 14 20 20 C 1.47423 * 125.65151 * 5.10359 * 19 17 15 21 21 C 1.54911 * 104.83073 * 155.89050 * 20 19 17 22 22 C 1.55160 * 101.58007 * 37.01152 * 21 20 19 23 23 C 1.47026 * 125.64293 * 185.12939 * 19 17 15 24 24 H 1.08996 * 109.88069 * 300.45197 * 23 19 17 25 25 C 1.52993 * 109.88431 * 61.62120 * 23 19 17 26 26 C 1.53001 * 109.46932 * 183.15327 * 25 23 19 27 27 O 1.42904 * 109.47074 * 184.65653 * 26 25 23 28 28 C 1.46927 * 118.73615 * 306.64582 * 14 13 12 29 29 H 0.96998 * 119.99843 * 0.02562 * 1 2 3 30 30 H 1.08994 * 109.46078 * 61.29966 * 11 9 7 31 31 H 1.09005 * 109.46266 * 301.34053 * 11 9 7 32 32 H 1.08999 * 109.50416 * 178.68228 * 12 11 9 33 33 H 1.09012 * 109.49740 * 58.58362 * 12 11 9 34 34 H 1.08996 * 109.58426 * 294.84114 * 13 12 11 35 35 H 1.09004 * 109.69963 * 174.48921 * 13 12 11 36 36 H 1.08998 * 110.36680 * 37.05097 * 20 19 17 37 37 H 1.08995 * 110.45703 * 274.77772 * 20 19 17 38 38 H 1.08997 * 111.00164 * 278.93483 * 21 20 19 39 39 H 1.09000 * 110.99835 * 155.08319 * 21 20 19 40 40 H 1.08999 * 110.71499 * 206.13132 * 22 21 20 41 41 H 1.09001 * 110.72151 * 82.86259 * 22 21 20 42 42 H 1.08993 * 109.47652 * 303.14974 * 25 23 19 43 43 H 1.09001 * 109.47042 * 63.15446 * 25 23 19 44 44 H 1.09002 * 109.47519 * 304.64954 * 26 25 23 45 45 H 1.08998 * 109.47718 * 64.65163 * 26 25 23 46 46 H 0.96703 * 113.99757 * 180.02562 * 27 26 25 47 47 H 1.09002 * 109.58231 * 173.14663 * 28 14 13 48 48 H 1.09000 * 109.58595 * 293.56825 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 1 0.6228 -2.5570 -0.8894 11 6 2.2451 -3.6627 -0.0005 12 6 1.4813 -4.9885 -0.0338 13 6 0.6058 -5.1003 1.2184 14 7 -0.2528 -3.9110 1.3030 15 6 -1.5891 -4.0362 1.4245 16 8 -2.2841 -3.0470 1.5297 17 6 -2.2152 -5.3932 1.4296 18 8 -1.5152 -6.3843 1.4459 19 7 -3.5573 -5.5162 1.4162 20 6 -4.5206 -4.4074 1.2895 21 6 -5.8025 -5.0596 0.7143 22 6 -5.8045 -6.4328 1.4367 23 6 -4.3031 -6.7785 1.5260 24 1 -4.0269 -7.4446 0.7087 25 6 -4.0018 -7.4457 2.8694 26 6 -4.7201 -8.7948 2.9413 27 8 -4.5278 -9.3684 4.2359 28 6 0.3727 -2.5827 1.2464 29 1 -0.4850 0.8400 -0.0004 30 1 2.8562 -3.6183 0.9009 31 1 2.8875 -3.5917 -0.8783 32 1 2.1899 -5.8163 -0.0574 33 1 0.8510 -5.0230 -0.9226 34 1 1.2396 -5.1571 2.1034 35 1 -0.0140 -5.9947 1.1548 36 1 -4.1396 -3.6504 0.6040 37 1 -4.7243 -3.9664 2.2653 38 1 -5.7256 -5.1863 -0.3655 39 1 -6.6873 -4.4792 0.9760 40 1 -6.3375 -7.1782 0.8465 41 1 -6.2397 -6.3443 2.4321 42 1 -2.9273 -7.6008 2.9653 43 1 -4.3502 -6.8050 3.6795 44 1 -5.7856 -8.6491 2.7631 45 1 -4.3132 -9.4640 2.1832 46 1 -4.9565 -10.2273 4.3531 47 1 -0.4009 -1.8164 1.1987 48 1 0.9871 -2.4300 2.1337 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118463278.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:36:35 Heat of formation + Delta-G solvation = -105.039412 kcal Electronic energy + Delta-G solvation = -29052.272890 eV Core-core repulsion = 25107.604878 eV Total energy + Delta-G solvation = -3944.668012 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.79237 -39.07471 -37.60592 -37.08366 -36.64427 -33.32166 -32.57541 -31.82680 -31.53003 -29.73976 -27.35332 -26.16167 -25.03507 -24.06241 -22.65930 -22.07885 -21.64590 -20.58778 -19.41669 -18.54396 -17.66314 -17.03381 -16.78820 -16.21069 -15.87875 -15.62577 -15.31350 -15.01389 -14.52008 -14.25993 -13.81257 -13.77930 -13.68813 -13.35694 -13.31740 -12.94168 -12.83308 -12.64295 -12.52049 -12.18985 -12.04412 -11.80101 -11.44738 -11.38725 -11.25297 -11.02328 -10.97635 -10.95738 -10.65575 -10.43010 -10.25677 -10.20616 -9.99504 -9.79133 -9.18285 -9.10283 -8.82542 -8.47647 -8.37000 -7.79753 -6.01825 -4.09941 1.81873 2.53925 3.30186 3.37448 3.40183 3.62559 3.76221 4.03257 4.29920 4.37391 4.42116 4.69060 4.70988 4.83397 4.92396 5.07646 5.11435 5.23704 5.28697 5.31412 5.49238 5.63712 5.66055 5.67679 5.71105 5.82455 5.89759 5.96506 6.00653 6.04782 6.21771 6.28038 6.39782 6.52650 6.63405 6.73154 6.88527 7.00502 7.08497 7.19911 7.30377 7.34780 7.60303 7.82834 7.94879 7.97828 8.19082 8.36377 8.61840 8.94135 9.55564 11.03657 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.019794 B = 0.003214 C = 0.002900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1414.212246 B = 8710.233002 C = 9653.259265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.062 3.938 3 Si 0.893 3.107 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.519 4.519 8 H 0.059 0.941 9 C 0.041 3.959 10 H 0.028 0.972 11 C -0.113 4.113 12 C -0.130 4.130 13 C 0.048 3.952 14 N -0.566 5.566 15 C 0.496 3.504 16 O -0.520 6.520 17 C 0.527 3.473 18 O -0.515 6.515 19 N -0.589 5.589 20 C 0.103 3.897 21 C -0.137 4.137 22 C -0.130 4.130 23 C 0.139 3.861 24 H 0.082 0.918 25 C -0.134 4.134 26 C 0.082 3.918 27 O -0.574 6.574 28 C 0.108 3.892 29 H 0.263 0.737 30 H 0.049 0.951 31 H 0.050 0.950 32 H 0.059 0.941 33 H 0.056 0.944 34 H 0.057 0.943 35 H 0.146 0.854 36 H 0.098 0.902 37 H 0.075 0.925 38 H 0.077 0.923 39 H 0.086 0.914 40 H 0.083 0.917 41 H 0.080 0.920 42 H 0.084 0.916 43 H 0.073 0.927 44 H 0.047 0.953 45 H 0.047 0.953 46 H 0.379 0.621 47 H 0.124 0.876 48 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.992 -16.536 3.139 21.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.141 4.141 3 Si 0.721 3.279 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.557 4.557 8 H 0.077 0.923 9 C 0.022 3.978 10 H 0.047 0.953 11 C -0.151 4.151 12 C -0.168 4.168 13 C -0.074 4.074 14 N -0.298 5.298 15 C 0.277 3.723 16 O -0.397 6.397 17 C 0.312 3.688 18 O -0.393 6.393 19 N -0.323 5.323 20 C -0.019 4.019 21 C -0.175 4.175 22 C -0.168 4.168 23 C 0.036 3.964 24 H 0.100 0.900 25 C -0.172 4.172 26 C 0.003 3.997 27 O -0.379 6.379 28 C -0.011 4.011 29 H 0.073 0.927 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.078 0.922 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.162 0.838 36 H 0.117 0.883 37 H 0.094 0.906 38 H 0.096 0.904 39 H 0.105 0.895 40 H 0.101 0.899 41 H 0.099 0.901 42 H 0.102 0.898 43 H 0.092 0.908 44 H 0.065 0.935 45 H 0.065 0.935 46 H 0.225 0.775 47 H 0.142 0.858 48 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -12.691 -15.803 3.300 20.535 hybrid contribution 0.317 0.476 -0.109 0.582 sum -12.374 -15.327 3.191 19.956 Atomic orbital electron populations 1.69872 1.05756 1.26836 1.49531 1.25057 0.94916 0.99291 0.94797 0.86570 0.79833 0.83374 0.78096 1.20678 1.21168 1.19894 1.21092 0.92980 0.90029 1.51616 0.92261 1.18885 0.92672 0.92512 0.93744 0.95343 1.21662 0.98550 0.94373 1.00491 1.21907 0.98517 0.98628 0.97770 1.23157 0.95326 0.91118 0.97767 1.48439 1.04343 1.10205 1.66777 1.19650 0.83881 0.88274 0.80505 1.90735 1.61105 1.38505 1.49372 1.20551 0.81083 0.90715 0.76433 1.90266 1.58507 1.40385 1.50135 1.48362 1.04573 1.08966 1.70369 1.22565 0.87456 0.89370 1.02559 1.22876 0.98054 0.95888 1.00654 1.22792 0.94085 0.98051 1.01879 1.21523 0.91409 0.86072 0.97403 0.90040 1.21876 1.02947 0.95280 0.97094 1.22090 0.98590 0.94410 0.84576 1.86504 1.78681 1.39235 1.33474 1.22392 0.98849 0.80762 0.99125 0.92660 0.93221 0.93120 0.92243 0.92534 0.92497 0.83808 0.88328 0.90649 0.90438 0.89499 0.89888 0.90129 0.89753 0.90815 0.93454 0.93482 0.77476 0.85814 0.93431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.39 11.39 55.43 0.63 -24.76 16 2 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 3 Si 0.89 21.23 29.54 -169.99 -5.02 16.21 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 6 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.52 -14.13 8.56 -34.44 -0.29 -14.42 16 8 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 9 C 0.04 1.03 2.24 -91.88 -0.21 0.82 16 10 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 11 C -0.11 -2.37 5.11 -26.69 -0.14 -2.51 16 12 C -0.13 -2.36 6.08 -26.61 -0.16 -2.52 16 13 C 0.05 0.89 6.24 -3.71 -0.02 0.87 16 14 N -0.57 -12.13 2.98 -173.54 -0.52 -12.64 16 15 C 0.50 10.29 7.69 -11.59 -0.09 10.20 16 16 O -0.52 -11.82 13.49 5.50 0.07 -11.74 16 17 C 0.53 9.19 7.56 -11.58 -0.09 9.10 16 18 O -0.51 -9.15 12.21 5.50 0.07 -9.09 16 19 N -0.59 -8.33 3.06 -163.52 -0.50 -8.83 16 20 C 0.10 1.31 5.79 -2.53 -0.01 1.29 16 21 C -0.14 -1.17 7.09 -24.58 -0.17 -1.35 16 22 C -0.13 -0.98 5.44 -24.90 -0.14 -1.12 16 23 C 0.14 1.49 2.89 -66.95 -0.19 1.29 16 24 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 25 C -0.13 -1.49 5.03 -26.73 -0.13 -1.62 16 26 C 0.08 0.69 6.95 37.16 0.26 0.94 16 27 O -0.57 -5.42 13.66 -35.23 -0.48 -5.90 16 28 C 0.11 2.67 5.37 -3.94 -0.02 2.65 16 29 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 30 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.06 1.06 8.14 -51.92 -0.42 0.63 16 34 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 35 H 0.15 2.61 3.77 -57.03 -0.21 2.40 16 36 H 0.10 1.50 6.68 -51.93 -0.35 1.15 16 37 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.08 0.56 7.79 -51.93 -0.40 0.16 16 42 H 0.08 1.18 6.93 -51.93 -0.36 0.82 16 43 H 0.07 0.87 8.07 -51.93 -0.42 0.45 16 44 H 0.05 0.30 7.27 -51.93 -0.38 -0.08 16 45 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 46 H 0.38 1.66 9.12 45.56 0.42 2.07 16 47 H 0.12 3.46 5.12 -51.93 -0.27 3.20 16 48 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 LS Contribution 371.64 15.07 5.60 5.60 Total: -1.00 -32.18 371.64 -8.67 -40.84 By element: Atomic # 1 Polarization: 12.08 SS G_CDS: -7.01 Total: 5.07 kcal Atomic # 6 Polarization: 6.75 SS G_CDS: -1.51 Total: 5.24 kcal Atomic # 7 Polarization: -45.85 SS G_CDS: -0.39 Total: -46.24 kcal Atomic # 8 Polarization: -26.39 SS G_CDS: -0.34 Total: -26.73 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -32.18 -8.67 -40.84 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118463278.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.197 kcal (2) G-P(sol) polarization free energy of solvation -32.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds