Wall clock time and date at job start Tue Mar 31 2020 13:50:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86800 * 120.00161 * 2 1 4 4 H 1.48502 * 109.47090 * 270.00001 * 3 2 1 5 5 H 1.48500 * 109.46944 * 29.99887 * 3 2 1 6 6 H 1.48498 * 109.47226 * 150.00090 * 3 2 1 7 7 C 1.38819 * 119.99956 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99975 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00094 * 0.02562 * 7 2 1 10 10 C 1.47426 * 125.64583 * 0.03301 * 9 7 2 11 11 C 1.54914 * 104.82992 * 204.09666 * 10 9 7 12 12 C 1.55405 * 101.66697 * 323.07703 * 11 10 9 13 13 H 1.09000 * 110.69068 * 277.04987 * 12 11 10 14 14 C 1.50696 * 110.85075 * 153.69831 * 12 11 10 15 15 N 1.30834 * 125.90213 * 304.77871 * 14 12 11 16 16 N 1.40084 * 108.20620 * 179.85185 * 15 14 12 17 17 H 0.96998 * 126.03470 * 180.16735 * 16 15 14 18 18 C 1.34947 * 107.92515 * 0.41869 * 16 15 14 19 19 C 1.35315 * 107.74580 * 359.74900 * 18 16 15 20 20 C 1.50702 * 126.04034 * 180.02562 * 19 18 16 21 21 N 1.46502 * 109.47122 * 259.97845 * 20 19 18 22 22 C 1.34773 * 119.99687 * 180.02562 * 21 20 19 23 23 O 1.21275 * 120.00377 * 359.97438 * 22 21 20 24 24 C 1.50701 * 119.99468 * 179.97438 * 22 21 20 25 25 C 1.53003 * 109.46951 * 179.97438 * 24 22 21 26 26 C 1.53002 * 109.47216 * 180.02562 * 25 24 22 27 27 F 1.39904 * 109.47121 * 180.02562 * 26 25 24 28 28 C 1.47018 * 125.64899 * 179.97438 * 9 7 2 29 29 H 0.96998 * 120.00119 * 359.97438 * 1 2 3 30 30 H 1.08999 * 110.36956 * 322.94042 * 10 9 7 31 31 H 1.09001 * 110.36709 * 85.15235 * 10 9 7 32 32 H 1.09000 * 111.00339 * 81.07133 * 11 10 9 33 33 H 1.09001 * 111.00161 * 204.91727 * 11 10 9 34 34 H 1.07994 * 126.12514 * 179.79452 * 18 16 15 35 35 H 1.08999 * 109.46960 * 19.97828 * 20 19 18 36 36 H 1.08997 * 109.46833 * 139.98170 * 20 19 18 37 37 H 0.97006 * 119.99981 * 359.97438 * 21 20 19 38 38 H 1.08999 * 109.47320 * 299.99691 * 24 22 21 39 39 H 1.09006 * 109.47095 * 60.00223 * 24 22 21 40 40 H 1.08999 * 109.47162 * 300.00162 * 25 24 22 41 41 H 1.09006 * 109.46733 * 60.00375 * 25 24 22 42 42 H 1.09009 * 109.47073 * 300.00109 * 26 25 24 43 43 H 1.08994 * 109.47290 * 60.00171 * 26 25 24 44 44 H 1.09002 * 109.88241 * 298.39024 * 28 9 7 45 45 H 1.09000 * 109.88049 * 59.40154 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 -0.1415 -2.5332 -0.0007 11 6 -0.4021 -3.9323 0.6112 12 6 0.7808 -4.7551 0.0292 13 1 0.5495 -5.1029 -0.9776 14 6 1.1225 -5.9139 0.9300 15 7 1.4193 -5.8355 2.2018 16 7 1.6693 -7.1306 2.6735 17 1 1.9102 -7.3704 3.5820 18 6 1.5212 -7.9851 1.6395 19 6 1.1830 -7.2585 0.5493 20 6 0.9179 -7.8019 -0.8311 21 7 2.1046 -7.6087 -1.6682 22 6 2.0982 -8.0202 -2.9516 23 8 1.1103 -8.5509 -3.4133 24 6 3.3187 -7.8209 -3.8128 25 6 3.0496 -8.3727 -5.2142 26 6 4.2890 -8.1710 -6.0885 27 9 4.0427 -8.6751 -7.3701 28 6 1.9318 -3.7275 0.0005 29 1 -0.4850 0.8400 0.0004 30 1 -0.5998 -1.7587 0.6143 31 1 -0.5266 -2.4851 -1.0193 32 1 -0.3535 -3.8979 1.6996 33 1 -1.3592 -4.3327 0.2769 34 1 1.6489 -9.0568 1.6759 35 1 0.6892 -8.8656 -0.7651 36 1 0.0721 -7.2750 -1.2727 37 1 2.8947 -7.1839 -1.2990 38 1 3.5473 -6.7571 -3.8785 39 1 4.1648 -8.3478 -3.3715 40 1 2.8213 -9.4365 -5.1482 41 1 2.2035 -7.8461 -5.6557 42 1 4.5178 -7.1072 -6.1546 43 1 5.1348 -8.6977 -5.6468 44 1 2.5287 -3.8643 -0.9012 45 1 2.5600 -3.8500 0.8828 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001130419483.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:50:52 Heat of formation + Delta-G solvation = -1.030531 kcal Electronic energy + Delta-G solvation = -27190.696903 eV Core-core repulsion = 23159.371501 eV Total energy + Delta-G solvation = -4031.325402 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.170 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -47.81872 -41.38148 -39.69374 -37.28555 -35.18514 -34.19089 -33.10779 -31.36896 -30.78175 -29.12180 -27.87129 -27.47163 -25.37203 -24.65148 -22.33411 -22.03758 -20.52788 -20.19860 -20.06875 -18.71766 -18.13732 -17.09875 -16.81680 -16.77247 -16.23015 -15.60612 -15.49614 -15.01636 -14.95065 -14.59835 -14.41213 -14.24521 -13.88185 -13.54673 -13.41335 -12.84988 -12.71658 -12.42348 -12.18571 -12.04000 -11.81870 -11.71906 -11.53932 -11.30289 -11.05856 -10.91642 -10.82609 -10.76900 -10.54039 -10.11169 -10.07279 -10.03624 -9.76684 -9.47643 -9.15346 -9.12221 -8.65166 -8.60466 -6.78274 -5.61165 -3.02471 1.80139 2.55845 2.56992 2.84574 3.33549 3.42193 3.46868 3.49089 4.36033 4.45344 4.48445 4.50850 4.63254 4.67581 4.75617 4.95488 4.96292 5.10179 5.23337 5.25846 5.37510 5.45389 5.52186 5.55269 5.68920 5.70383 5.75812 5.92451 5.94492 5.96174 6.04738 6.35406 6.42268 6.51504 6.61760 6.71239 6.74455 6.96042 7.23098 7.43864 7.57231 7.66684 7.75778 7.90467 8.14316 8.40860 9.26126 9.87127 10.52385 11.42778 Molecular weight = 324.17amu Principal moments of inertia in cm(-1) A = 0.008956 B = 0.003300 C = 0.002583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3125.546995 B = 8482.790691 C =10838.086677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.012 4.012 3 Si 0.914 3.086 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.220 4.220 8 H 0.076 0.924 9 N -0.602 5.602 10 C 0.152 3.848 11 C -0.132 4.132 12 C -0.029 4.029 13 H 0.087 0.913 14 C 0.121 3.879 15 N -0.277 5.277 16 N -0.481 5.481 17 H 0.439 0.561 18 C 0.075 3.925 19 C -0.264 4.264 20 C 0.202 3.798 21 N -0.723 5.723 22 C 0.513 3.487 23 O -0.544 6.544 24 C -0.141 4.141 25 C -0.138 4.138 26 C 0.061 3.939 27 F -0.219 7.219 28 C 0.152 3.848 29 H 0.252 0.748 30 H 0.107 0.893 31 H 0.013 0.987 32 H 0.066 0.934 33 H 0.058 0.942 34 H 0.174 0.826 35 H 0.070 0.930 36 H 0.076 0.924 37 H 0.403 0.597 38 H 0.100 0.900 39 H 0.095 0.905 40 H 0.080 0.920 41 H 0.083 0.917 42 H 0.076 0.924 43 H 0.074 0.926 44 H 0.019 0.981 45 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.768 -20.538 -1.408 21.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.207 4.207 3 Si 0.744 3.256 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.208 1.208 7 C -0.348 4.348 8 H 0.094 0.906 9 N -0.328 5.328 10 C 0.028 3.972 11 C -0.172 4.172 12 C -0.050 4.050 13 H 0.106 0.894 14 C -0.047 4.047 15 N -0.098 5.098 16 N -0.186 5.186 17 H 0.282 0.718 18 C -0.074 4.074 19 C -0.276 4.276 20 C 0.079 3.921 21 N -0.375 5.375 22 C 0.299 3.701 23 O -0.422 6.422 24 C -0.181 4.181 25 C -0.176 4.176 26 C 0.006 3.994 27 F -0.200 7.200 28 C 0.025 3.975 29 H 0.062 0.938 30 H 0.125 0.875 31 H 0.031 0.969 32 H 0.085 0.915 33 H 0.077 0.923 34 H 0.191 0.809 35 H 0.088 0.912 36 H 0.094 0.906 37 H 0.237 0.763 38 H 0.119 0.881 39 H 0.114 0.886 40 H 0.099 0.901 41 H 0.102 0.898 42 H 0.095 0.905 43 H 0.092 0.908 44 H 0.037 0.963 45 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 6.160 -19.933 -0.744 20.877 hybrid contribution 0.905 0.231 0.061 0.936 sum 7.065 -19.702 -0.684 20.942 Atomic orbital electron populations 1.69794 1.04863 1.24696 1.57714 1.24776 0.95715 0.97647 1.02564 0.86082 0.78512 0.83440 0.77520 1.21663 1.21689 1.20762 1.19058 0.90451 0.82444 1.42894 0.90583 1.44462 1.01960 0.99595 1.86818 1.21940 0.84689 0.92447 0.98174 1.23134 0.95156 0.98206 1.00656 1.20789 0.98333 0.90218 0.95688 0.89432 1.22258 0.96253 0.94375 0.91852 1.77547 1.22600 0.97520 1.12181 1.46383 1.55973 1.05135 1.11148 0.71788 1.22357 0.99994 0.96978 0.88117 1.19951 1.18168 0.93178 0.96290 1.19365 0.87723 0.99915 0.85142 1.46207 1.17923 1.61957 1.11416 1.20541 0.89493 0.77984 0.82054 1.90714 1.35214 1.43252 1.72980 1.21563 0.97166 1.04163 0.95248 1.21901 0.98329 1.03692 0.93692 1.22020 0.98527 1.00019 0.78866 1.92771 1.95908 1.89576 1.41776 1.21225 0.92989 0.85452 0.97860 0.93763 0.87521 0.96926 0.91548 0.92321 0.80865 0.91158 0.90568 0.76310 0.88142 0.88644 0.90085 0.89790 0.90530 0.90816 0.96339 0.95441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.08 10.09 55.49 0.56 -26.52 16 2 C -0.01 -0.33 5.49 -17.43 -0.10 -0.43 16 3 Si 0.91 22.18 29.55 -169.99 -5.02 17.16 16 4 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.22 -6.19 10.27 -15.06 -0.15 -6.34 16 8 H 0.08 2.06 7.83 -52.49 -0.41 1.65 16 9 N -0.60 -15.61 3.39 -170.07 -0.58 -16.18 16 10 C 0.15 3.76 5.89 -2.53 -0.01 3.74 16 11 C -0.13 -2.61 6.53 -24.44 -0.16 -2.77 16 12 C -0.03 -0.52 3.37 -89.80 -0.30 -0.82 16 13 H 0.09 1.47 7.27 -51.93 -0.38 1.09 16 14 C 0.12 1.84 5.77 -82.41 -0.48 1.36 16 15 N -0.28 -4.34 12.34 33.67 0.42 -3.92 16 16 N -0.48 -5.08 7.36 30.44 0.22 -4.85 16 17 H 0.44 3.13 8.96 -182.61 -1.64 1.49 16 18 C 0.08 0.68 11.90 -17.22 -0.20 0.48 16 19 C -0.26 -3.06 5.47 -105.05 -0.57 -3.63 16 20 C 0.20 2.21 5.67 -5.19 -0.03 2.18 16 21 N -0.72 -7.20 5.55 -61.47 -0.34 -7.54 16 22 C 0.51 5.61 7.83 -10.99 -0.09 5.52 16 23 O -0.54 -8.10 15.98 5.56 0.09 -8.01 16 24 C -0.14 -1.04 5.70 -27.88 -0.16 -1.20 16 25 C -0.14 -1.16 4.96 -26.73 -0.13 -1.29 16 26 C 0.06 0.43 7.55 37.16 0.28 0.71 16 27 F -0.22 -2.30 17.36 2.25 0.04 -2.26 16 28 C 0.15 3.19 6.82 -3.07 -0.02 3.17 16 29 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 30 H 0.11 2.97 5.87 -51.93 -0.30 2.66 16 31 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.07 1.37 7.89 -51.93 -0.41 0.96 16 33 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.17 0.87 8.06 -52.49 -0.42 0.45 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.08 0.97 7.70 -51.93 -0.40 0.57 16 37 H 0.40 3.46 8.46 -40.82 -0.35 3.11 16 38 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.08 0.75 8.10 -51.93 -0.42 0.33 16 41 H 0.08 0.85 8.10 -51.93 -0.42 0.43 16 42 H 0.08 0.45 8.14 -51.92 -0.42 0.02 16 43 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 45 H 0.03 0.60 7.67 -51.93 -0.40 0.21 16 LS Contribution 375.52 15.07 5.66 5.66 Total: -1.00 -35.44 375.52 -9.15 -44.59 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: -8.06 Total: 1.19 kcal Atomic # 6 Polarization: 2.81 SS G_CDS: -2.13 Total: 0.68 kcal Atomic # 7 Polarization: -59.30 SS G_CDS: 0.28 Total: -59.02 kcal Atomic # 8 Polarization: -8.10 SS G_CDS: 0.09 Total: -8.01 kcal Atomic # 9 Polarization: -2.30 SS G_CDS: 0.04 Total: -2.26 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -35.44 -9.15 -44.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001130419483.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.562 kcal (2) G-P(sol) polarization free energy of solvation -35.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds