Wall clock time and date at job start Tue Mar 31 2020 14:00:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86808 * 119.99842 * 2 1 4 4 H 1.48491 * 109.47222 * 240.00171 * 3 2 1 5 5 H 1.48504 * 109.46973 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47065 * 120.00263 * 3 2 1 7 7 C 1.37874 * 120.00332 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99994 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99984 * 359.97438 * 7 2 1 10 10 C 1.50700 * 109.47269 * 180.02562 * 9 7 2 11 11 O 1.21284 * 119.99528 * 0.02562 * 10 9 7 12 12 N 1.34771 * 120.00265 * 179.97438 * 10 9 7 13 13 C 1.46499 * 120.00156 * 180.02562 * 12 10 9 14 14 H 1.08999 * 109.47228 * 325.00264 * 13 12 10 15 15 C 1.53003 * 109.46968 * 85.00648 * 13 12 10 16 16 C 1.52997 * 109.46860 * 180.02562 * 15 13 12 17 17 C 1.52999 * 109.47188 * 299.99296 * 16 15 13 18 18 H 1.08999 * 109.47091 * 300.00470 * 17 16 15 19 19 N 1.46499 * 109.47341 * 180.02562 * 17 16 15 20 20 C 1.34777 * 119.99665 * 85.27876 * 19 17 16 21 21 O 1.21283 * 119.99990 * 359.71991 * 20 19 17 22 22 C 1.50698 * 119.99538 * 179.72653 * 20 19 17 23 23 H 1.08996 * 110.33664 * 55.69785 * 22 20 19 24 24 C 1.54488 * 110.37260 * 293.44330 * 22 20 19 25 25 C 1.54507 * 104.06405 * 217.19624 * 24 22 20 26 26 C 1.54480 * 104.06346 * 359.97438 * 25 24 22 27 27 O 1.44426 * 110.37116 * 177.95043 * 22 20 19 28 28 C 1.53001 * 109.46944 * 60.00112 * 17 16 15 29 29 C 1.53003 * 109.46735 * 204.99935 * 13 12 10 30 30 H 0.97000 * 120.00181 * 359.97438 * 1 2 3 31 31 H 1.08999 * 109.46671 * 59.99739 * 9 7 2 32 32 H 1.09003 * 109.47061 * 300.00178 * 9 7 2 33 33 H 0.97007 * 119.99512 * 0.02562 * 12 10 9 34 34 H 1.09002 * 109.46570 * 299.99230 * 15 13 12 35 35 H 1.08993 * 109.47787 * 59.99440 * 15 13 12 36 36 H 1.09001 * 109.47132 * 179.97438 * 16 15 13 37 37 H 1.08999 * 109.47488 * 59.99523 * 16 15 13 38 38 H 0.97001 * 119.99790 * 264.99588 * 19 17 16 39 39 H 1.09003 * 110.51100 * 335.84192 * 24 22 20 40 40 H 1.08998 * 110.50641 * 98.54577 * 24 22 20 41 41 H 1.08993 * 110.51133 * 118.64893 * 25 24 22 42 42 H 1.09009 * 110.50605 * 241.22248 * 25 24 22 43 43 H 1.09000 * 110.37306 * 142.81626 * 26 25 24 44 44 H 1.08998 * 110.37180 * 265.04059 * 26 25 24 45 45 H 1.08999 * 109.46935 * 60.00262 * 28 17 16 46 46 H 1.09004 * 109.47138 * 180.02562 * 28 17 16 47 47 H 1.09000 * 109.47291 * 60.00890 * 29 13 12 48 48 H 1.08999 * 109.47531 * 300.00143 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1028 1.6966 -1.2124 5 1 1.2841 2.7465 0.0006 6 1 3.1030 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 6 2.2305 -3.6446 -0.0005 11 8 3.4229 -3.4228 -0.0001 12 7 1.7814 -4.9152 0.0000 13 6 2.7334 -6.0287 0.0006 14 1 3.6094 -5.7580 -0.5889 15 6 3.1601 -6.3341 1.4378 16 6 4.1549 -7.4965 1.4383 17 6 3.4933 -8.7342 0.8290 18 1 2.6174 -9.0052 1.4183 19 7 4.4456 -9.8474 0.8300 20 6 4.5756 -10.6219 1.9253 21 8 3.9080 -10.3941 2.9119 22 6 5.5508 -11.7709 1.9242 23 1 6.5513 -11.4183 1.6740 24 6 5.0986 -12.8591 0.9253 25 6 5.4665 -14.1869 1.6245 26 6 6.0981 -13.7438 2.9628 27 8 5.5561 -12.4270 3.2108 28 6 3.0665 -8.4289 -0.6082 29 6 2.0711 -7.2662 -0.6086 30 1 -0.4850 0.8400 0.0004 31 1 0.6242 -2.5566 -0.8903 32 1 0.6248 -2.5571 0.8897 33 1 0.8276 -5.0925 0.0000 34 1 3.6320 -5.4524 1.8717 35 1 2.2842 -6.6047 2.0273 36 1 4.4593 -7.7138 2.4621 37 1 5.0309 -7.2254 0.8490 38 1 4.9795 -10.0296 0.0409 39 1 4.0230 -12.8008 0.7580 40 1 5.6383 -12.7609 -0.0166 41 1 4.5730 -14.7850 1.8028 42 1 6.1865 -14.7463 1.0271 43 1 5.8132 -14.4283 3.7619 44 1 7.1834 -13.6973 2.8732 45 1 3.9424 -8.1578 -1.1976 46 1 2.5947 -9.3105 -1.0422 47 1 1.7671 -7.0487 -1.6325 48 1 1.1951 -7.5368 -0.0192 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143204938.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:00:42 Heat of formation + Delta-G solvation = -143.199504 kcal Electronic energy + Delta-G solvation = -27308.584639 eV Core-core repulsion = 23362.261881 eV Total energy + Delta-G solvation = -3946.322758 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.76616 -39.59633 -38.69069 -37.44534 -34.83083 -32.98934 -32.89184 -32.37795 -30.91739 -30.38298 -29.13340 -27.62920 -24.49862 -23.56584 -22.92678 -22.10234 -21.83554 -20.70879 -20.08882 -19.46121 -17.93455 -17.07931 -16.61286 -16.42681 -16.16543 -15.63087 -15.45322 -15.32054 -14.95457 -14.50654 -14.40996 -14.29002 -13.96666 -13.76750 -13.65082 -13.20158 -12.71083 -12.59620 -12.36358 -12.31396 -12.26426 -12.03196 -11.88487 -11.68624 -11.49146 -11.31619 -11.25437 -11.12346 -10.77981 -10.63730 -10.47671 -10.46328 -10.43965 -9.93182 -9.88260 -9.29059 -9.25930 -8.60205 -8.45250 -8.36752 -6.03256 -4.02616 2.29238 2.54583 3.38937 3.40956 3.46332 3.56824 3.74883 3.88394 3.96986 4.17384 4.31525 4.44967 4.50827 4.53805 4.58155 4.61966 4.79368 4.97613 5.00234 5.02476 5.14255 5.14875 5.25960 5.32676 5.34973 5.35058 5.35917 5.39642 5.45792 5.59820 5.65782 5.81625 5.92088 5.99286 6.13294 6.17028 6.20671 6.28146 6.43403 6.52447 7.11318 7.17484 7.23423 7.36211 7.93189 7.98348 8.09767 8.48292 9.07908 9.27868 9.62354 11.09076 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.038430 B = 0.001886 C = 0.001852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.416937 B =14841.972348 C =15112.992836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.054 3.946 3 Si 0.902 3.098 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.508 4.508 8 H 0.074 0.926 9 C 0.004 3.996 10 C 0.515 3.485 11 O -0.546 6.546 12 N -0.746 5.746 13 C 0.144 3.856 14 H 0.083 0.917 15 C -0.127 4.127 16 C -0.125 4.125 17 C 0.145 3.855 18 H 0.090 0.910 19 N -0.724 5.724 20 C 0.517 3.483 21 O -0.515 6.515 22 C 0.056 3.944 23 H 0.095 0.905 24 C -0.145 4.145 25 C -0.154 4.154 26 C 0.040 3.960 27 O -0.344 6.344 28 C -0.120 4.120 29 C -0.122 4.122 30 H 0.262 0.738 31 H 0.047 0.953 32 H 0.047 0.953 33 H 0.395 0.605 34 H 0.074 0.926 35 H 0.064 0.936 36 H 0.068 0.932 37 H 0.066 0.934 38 H 0.399 0.601 39 H 0.081 0.919 40 H 0.087 0.913 41 H 0.079 0.921 42 H 0.081 0.919 43 H 0.096 0.904 44 H 0.063 0.937 45 H 0.071 0.929 46 H 0.071 0.929 47 H 0.075 0.925 48 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.039 -30.829 -1.641 32.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.147 4.147 3 Si 0.730 3.270 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.202 1.202 7 C -0.546 4.546 8 H 0.092 0.908 9 C -0.035 4.035 10 C 0.305 3.695 11 O -0.422 6.422 12 N -0.399 5.399 13 C 0.039 3.961 14 H 0.101 0.899 15 C -0.166 4.166 16 C -0.164 4.164 17 C 0.041 3.959 18 H 0.108 0.892 19 N -0.376 5.376 20 C 0.302 3.698 21 O -0.389 6.389 22 C -0.005 4.005 23 H 0.113 0.887 24 C -0.183 4.183 25 C -0.192 4.192 26 C -0.036 4.036 27 O -0.262 6.262 28 C -0.158 4.158 29 C -0.161 4.161 30 H 0.071 0.929 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.228 0.772 34 H 0.092 0.908 35 H 0.083 0.917 36 H 0.086 0.914 37 H 0.084 0.916 38 H 0.233 0.767 39 H 0.100 0.900 40 H 0.105 0.895 41 H 0.097 0.903 42 H 0.100 0.900 43 H 0.115 0.885 44 H 0.082 0.918 45 H 0.090 0.910 46 H 0.090 0.910 47 H 0.094 0.906 48 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 9.195 -30.264 -0.691 31.638 hybrid contribution 0.288 0.574 -0.553 0.847 sum 9.483 -29.691 -1.244 31.193 Atomic orbital electron populations 1.69951 1.06018 1.26962 1.51170 1.25010 0.94911 0.99457 0.95273 0.86488 0.79374 0.82337 0.78826 1.20169 1.21382 1.20152 1.21129 0.94209 0.89177 1.50094 0.90777 1.19237 0.94200 0.90655 0.99410 1.21991 0.91065 0.83483 0.72922 1.90526 1.18040 1.84654 1.49017 1.46371 1.09345 1.05828 1.78361 1.20817 0.93500 0.85950 0.95859 0.89890 1.21897 0.99119 0.98098 0.97498 1.21866 0.98886 0.94022 1.01601 1.21102 0.92140 0.85431 0.97210 0.89184 1.45995 1.43577 1.31861 1.16217 1.20184 0.83523 0.82755 0.83340 1.90757 1.44911 1.70413 1.32838 1.22887 0.98704 0.93109 0.85846 0.88745 1.22923 1.03167 0.93599 0.98587 1.22943 1.02051 0.97520 0.96649 1.23526 0.97885 0.84695 0.97537 1.89329 1.84591 1.26351 1.25922 1.21741 1.00037 0.98735 0.95332 1.21753 0.98399 0.93918 1.01998 0.92892 0.93535 0.93509 0.77156 0.90752 0.91717 0.91365 0.91556 0.76704 0.90032 0.89452 0.90256 0.90016 0.88530 0.91837 0.90996 0.91026 0.90647 0.91127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.60 13.29 55.43 0.74 -25.86 16 2 C 0.05 1.56 5.46 -17.82 -0.10 1.47 16 3 Si 0.90 22.35 29.54 -169.99 -5.02 17.33 16 4 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 6 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 7 C -0.51 -14.84 8.92 -34.44 -0.31 -15.15 16 8 H 0.07 2.26 6.75 -52.49 -0.35 1.90 16 9 C 0.00 0.11 5.46 -29.03 -0.16 -0.05 16 10 C 0.52 11.61 7.79 -10.99 -0.09 11.53 16 11 O -0.55 -14.11 15.12 5.55 0.08 -14.02 16 12 N -0.75 -12.43 5.08 -53.80 -0.27 -12.70 16 13 C 0.14 2.00 2.45 -67.93 -0.17 1.83 16 14 H 0.08 1.31 7.58 -51.93 -0.39 0.92 16 15 C -0.13 -1.76 5.49 -26.73 -0.15 -1.90 16 16 C -0.12 -1.46 5.50 -26.73 -0.15 -1.60 16 17 C 0.14 1.39 2.46 -67.93 -0.17 1.22 16 18 H 0.09 1.03 7.57 -51.93 -0.39 0.64 16 19 N -0.72 -5.72 5.07 -53.81 -0.27 -5.99 16 20 C 0.52 5.50 7.04 -10.99 -0.08 5.43 16 21 O -0.52 -8.09 16.21 -13.65 -0.22 -8.31 16 22 C 0.06 0.44 3.70 -27.10 -0.10 0.34 16 23 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 24 C -0.14 -0.71 6.62 -25.16 -0.17 -0.87 16 25 C -0.15 -0.67 7.09 -25.16 -0.18 -0.85 16 26 C 0.04 0.24 7.63 37.93 0.29 0.53 16 27 O -0.34 -3.64 10.92 -54.44 -0.59 -4.23 16 28 C -0.12 -0.94 5.39 -26.70 -0.14 -1.08 16 29 C -0.12 -1.20 5.40 -26.70 -0.14 -1.34 16 30 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 31 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 32 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 33 H 0.40 5.59 8.60 -40.82 -0.35 5.24 16 34 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 35 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.40 1.86 8.60 -40.82 -0.35 1.50 16 39 H 0.08 0.47 7.86 -51.93 -0.41 0.06 16 40 H 0.09 0.21 8.14 -51.93 -0.42 -0.21 16 41 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 42 H 0.08 0.20 8.14 -51.92 -0.42 -0.22 16 43 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 45 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 46 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 47 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 48 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 388.51 15.07 5.85 5.85 Total: -1.00 -37.05 388.51 -9.66 -46.71 By element: Atomic # 1 Polarization: 9.89 SS G_CDS: -8.15 Total: 1.74 kcal Atomic # 6 Polarization: 1.29 SS G_CDS: -1.80 Total: -0.50 kcal Atomic # 7 Polarization: -44.74 SS G_CDS: 0.19 Total: -44.55 kcal Atomic # 8 Polarization: -25.84 SS G_CDS: -0.73 Total: -26.57 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -37.05 -9.66 -46.71 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143204938.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.491 kcal (2) G-P(sol) polarization free energy of solvation -37.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds