Wall clock time and date at job start Tue Mar 31 2020 13:59:40
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31621 * 1
3 3 Si 1.86801 * 120.00225 * 2 1
4 4 H 1.48503 * 109.47014 * 95.30067 * 3 2 1
5 5 H 1.48500 * 109.47165 * 215.30085 * 3 2 1
6 6 H 1.48498 * 109.47153 * 335.30258 * 3 2 1
7 7 C 1.38809 * 119.99746 * 180.02562 * 2 1 3
8 8 H 1.08003 * 120.00335 * 28.95331 * 7 2 1
9 9 N 1.36942 * 120.00066 * 208.95446 * 7 2 1
10 10 C 1.47140 * 125.58430 * 9.83259 * 9 7 2
11 11 C 1.54604 * 107.36220 * 180.92557 * 10 9 7
12 12 C 1.53651 * 102.73305 * 20.75479 * 11 10 9
13 13 C 1.52375 * 116.39973 * 197.07904 * 12 11 10
14 14 N 1.47894 * 85.58542 * 218.64855 * 13 12 11
15 15 C 1.34781 * 134.33381 * 203.43922 * 14 13 12
16 16 O 1.21283 * 119.99433 * 180.02562 * 15 14 13
17 17 C 1.50696 * 120.00364 * 0.06325 * 15 14 13
18 18 O 1.42902 * 109.47273 * 179.97438 * 17 15 14
19 19 C 1.42899 * 114.00264 * 180.02562 * 18 17 15
20 20 C 1.52998 * 109.47273 * 179.97438 * 19 18 17
21 21 H 1.09013 * 110.45460 * 52.39691 * 20 19 18
22 22 C 1.54506 * 110.51209 * 174.99684 * 20 19 18
23 23 C 1.54475 * 104.06159 * 118.64685 * 22 20 19
24 24 O 1.44422 * 104.80452 * 23.98158 * 23 22 20
25 25 C 1.44431 * 105.27246 * 319.48534 * 24 23 22
26 26 C 1.47880 * 91.32063 * 23.48475 * 14 13 12
27 27 C 1.47723 * 125.58634 * 189.52213 * 9 7 2
28 28 H 0.96992 * 120.00539 * 184.81697 * 1 2 3
29 29 H 1.08993 * 109.86427 * 300.37569 * 10 9 7
30 30 H 1.09000 * 109.86891 * 61.34551 * 10 9 7
31 31 H 1.09000 * 110.75657 * 139.06289 * 11 10 9
32 32 H 1.09001 * 110.75930 * 262.44009 * 11 10 9
33 33 H 1.08993 * 113.85072 * 332.81439 * 13 12 11
34 34 H 1.08998 * 113.85098 * 104.48328 * 13 12 11
35 35 H 1.09002 * 109.47338 * 299.99973 * 17 15 14
36 36 H 1.09003 * 109.46984 * 60.00142 * 17 15 14
37 37 H 1.09000 * 109.46922 * 300.00245 * 19 18 17
38 38 H 1.08994 * 109.47103 * 59.99900 * 19 18 17
39 39 H 1.08997 * 110.51354 * 237.29251 * 22 20 19
40 40 H 1.08999 * 110.51060 * 359.86168 * 22 20 19
41 41 H 1.09007 * 110.37418 * 142.80977 * 23 22 20
42 42 H 1.09001 * 110.37029 * 265.14861 * 23 22 20
43 43 H 1.08998 * 110.37433 * 281.68224 * 25 24 23
44 44 H 1.08999 * 110.36836 * 159.34492 * 25 24 23
45 45 H 1.08994 * 113.85473 * 222.34660 * 26 14 13
46 46 H 1.09008 * 113.85352 * 90.67893 * 26 14 13
47 47 H 1.08995 * 110.40141 * 276.33344 * 27 9 7
48 48 H 1.08993 * 110.40093 * 38.75309 * 27 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2503 1.6177 0.0000
4 1 2.6098 1.9817 1.3941
5 1 3.4873 1.4750 -0.8091
6 1 1.3963 2.6824 -0.5850
7 6 2.0102 -1.2022 -0.0005
8 1 1.5714 -2.0788 -0.4537
9 7 3.2512 -1.2766 0.5736
10 6 3.8778 -0.2306 1.3972
11 6 5.2784 -0.7421 1.8055
12 6 5.5645 -1.8233 0.7520
13 6 6.6780 -2.8106 1.0795
14 7 7.0288 -2.7149 -0.3541
15 6 7.6804 -3.5163 -1.2198
16 8 7.8261 -3.1713 -2.3734
17 6 8.2272 -4.8413 -0.7548
18 8 8.8695 -5.5016 -1.8474
19 6 9.4252 -6.7746 -1.5118
20 6 10.0828 -7.3865 -2.7503
21 1 10.7838 -6.6813 -3.1972
22 6 10.8002 -8.7057 -2.3864
23 6 10.0767 -9.7733 -3.2367
24 8 9.5138 -9.0413 -4.3472
25 6 9.0108 -7.8131 -3.7774
26 6 6.3811 -1.3896 -0.4592
27 6 4.1777 -2.4228 0.4728
28 1 -0.4850 -0.8370 0.0705
29 1 3.9729 0.6885 0.8192
30 1 3.2742 -0.0480 2.2863
31 1 6.0148 0.0594 1.7463
32 1 5.2555 -1.1740 2.8061
33 1 7.4402 -2.4096 1.7475
34 1 6.3197 -3.7949 1.3809
35 1 8.9489 -4.6760 0.0452
36 1 7.4108 -5.4618 -0.3851
37 1 10.1719 -6.6497 -0.7276
38 1 8.6335 -7.4347 -1.1577
39 1 11.8551 -8.6536 -2.6555
40 1 10.6884 -8.9206 -1.3237
41 1 10.7870 -10.5186 -3.5947
42 1 9.2863 -10.2491 -2.6561
43 1 8.0570 -7.9883 -3.2798
44 1 8.9023 -7.0527 -4.5507
45 1 5.7900 -1.2585 -1.3654
46 1 7.0526 -0.5539 -0.2617
47 1 3.9302 -3.1781 1.2186
48 1 4.1444 -2.8513 -0.5288
RHF calculation, no. of doubly occupied orbitals= 62
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001148378573.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:59:40
Heat of formation + Delta-G solvation = -52.149749 kcal
Electronic energy + Delta-G solvation = -27626.949373 eV
Core-core repulsion = 23684.574829 eV
Total energy + Delta-G solvation = -3942.374544 eV
No. of doubly occupied orbitals = 62
Molecular weight
(most abundant/longest-lived isotopes) = 324.188 amu
Computer time = 0.82 seconds
Orbital eigenvalues (eV)
-40.75561 -39.94378 -38.77803 -37.41237 -35.90219 -33.30600 -32.48842 -30.55113
-29.89402 -29.10714 -27.96428 -26.27793 -26.02719 -25.16710 -23.20281 -23.08009
-20.93977 -20.78617 -19.55523 -18.52832 -17.65429 -17.36768 -16.99318 -16.68213
-16.41066 -16.13006 -15.67146 -15.56843 -15.25085 -15.17363 -14.69332 -14.26107
-13.72410 -13.58387 -13.41800 -13.31001 -13.05908 -12.79775 -12.63944 -12.26424
-12.11790 -11.98209 -11.86161 -11.74980 -11.53603 -11.27086 -11.14761 -11.05240
-11.01428 -10.66664 -10.38992 -10.32100 -10.16138 -10.04738 -9.63512 -9.59998
-9.17971 -8.70669 -8.46312 -7.10979 -6.38238 -3.19527 2.40230 2.58745
3.37518 3.41764 3.53231 3.65255 3.70365 4.14997 4.24008 4.35739
4.38101 4.52375 4.62137 4.68094 4.70276 4.76430 4.84104 4.87304
4.88564 4.94901 5.03958 5.15807 5.20620 5.26362 5.27723 5.29383
5.31730 5.36366 5.44939 5.47516 5.59880 5.65151 5.70530 5.74502
5.83829 5.92678 6.04613 6.18523 6.41797 6.44762 6.45673 6.51526
6.70444 6.73924 7.64763 7.67530 8.13668 8.32632 9.00198 9.55659
10.22146 11.11039
Molecular weight = 324.19amu
Principal moments of inertia in cm(-1)
A = 0.023614 B = 0.002248 C = 0.002167
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1185.452268 B =12454.798298 C =12916.134902
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.912 5.912
2 C -0.013 4.013
3 Si 1.054 2.946
4 H -0.293 1.293
5 H -0.292 1.292
6 H -0.299 1.299
7 C -0.333 4.333
8 H 0.077 0.923
9 N -0.608 5.608
10 C 0.119 3.881
11 C -0.115 4.115
12 C -0.109 4.109
13 C 0.114 3.886
14 N -0.642 5.642
15 C 0.534 3.466
16 O -0.523 6.523
17 C 0.052 3.948
18 O -0.362 6.362
19 C 0.069 3.931
20 C -0.121 4.121
21 H 0.095 0.905
22 C -0.148 4.148
23 C 0.043 3.957
24 O -0.377 6.377
25 C 0.053 3.947
26 C 0.131 3.869
27 C 0.161 3.839
28 H 0.264 0.736
29 H 0.027 0.973
30 H 0.041 0.959
31 H 0.072 0.928
32 H 0.076 0.924
33 H 0.089 0.911
34 H 0.084 0.916
35 H 0.078 0.922
36 H 0.079 0.921
37 H 0.055 0.945
38 H 0.054 0.946
39 H 0.081 0.919
40 H 0.079 0.921
41 H 0.092 0.908
42 H 0.060 0.940
43 H 0.063 0.937
44 H 0.098 0.902
45 H 0.089 0.911
46 H 0.085 0.915
47 H 0.032 0.968
48 H 0.046 0.954
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 23.188 -15.261 4.004 28.046
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.551 5.551
2 C -0.214 4.214
3 Si 0.887 3.113
4 H -0.221 1.221
5 H -0.220 1.220
6 H -0.227 1.227
7 C -0.460 4.460
8 H 0.095 0.905
9 N -0.335 5.335
10 C -0.006 4.006
11 C -0.153 4.153
12 C -0.111 4.111
13 C -0.009 4.009
14 N -0.380 5.380
15 C 0.322 3.678
16 O -0.398 6.398
17 C -0.028 4.028
18 O -0.280 6.280
19 C -0.008 4.008
20 C -0.139 4.139
21 H 0.113 0.887
22 C -0.186 4.186
23 C -0.034 4.034
24 O -0.296 6.296
25 C -0.024 4.024
26 C 0.009 3.991
27 C 0.035 3.965
28 H 0.074 0.926
29 H 0.045 0.955
30 H 0.059 0.941
31 H 0.090 0.910
32 H 0.095 0.905
33 H 0.107 0.893
34 H 0.102 0.898
35 H 0.096 0.904
36 H 0.097 0.903
37 H 0.073 0.927
38 H 0.072 0.928
39 H 0.099 0.901
40 H 0.098 0.902
41 H 0.110 0.890
42 H 0.078 0.922
43 H 0.081 0.919
44 H 0.117 0.883
45 H 0.107 0.893
46 H 0.103 0.897
47 H 0.050 0.950
48 H 0.064 0.936
Dipole moment (debyes) X Y Z Total
from point charges 23.071 -13.579 2.672 26.904
hybrid contribution 0.293 -1.643 0.700 1.809
sum 23.364 -15.222 3.372 28.088
Atomic orbital electron populations
1.70890 1.06238 1.29380 1.48595 1.25765 0.96102 1.00683 0.98842
0.83969 0.74300 0.76907 0.76135 1.22138 1.22017 1.22726 1.19996
0.90070 0.98085 1.37808 0.90489 1.44893 1.16301 1.14275 1.58053
1.21679 0.91596 0.92552 0.94744 1.22355 0.97854 0.97257 0.97847
1.22617 0.95781 0.96735 0.95988 1.23106 0.95317 1.00470 0.82053
1.50116 1.56186 1.20570 1.11114 1.19810 0.77476 0.85163 0.85347
1.90741 1.56669 1.74581 1.17777 1.22109 0.97729 0.92740 0.90184
1.88009 1.74408 1.32049 1.33537 1.22626 0.96813 0.84715 0.96613
1.22515 0.98268 0.97296 0.95858 0.88672 1.22941 1.00768 0.93840
1.01070 1.23415 0.96913 0.94805 0.88235 1.89154 1.78074 1.31795
1.30538 1.23491 0.95722 0.86524 0.96628 1.22984 0.92378 0.84294
0.99407 1.21177 0.85227 0.91144 0.98945 0.92570 0.95537 0.94076
0.90963 0.90547 0.89293 0.89766 0.90445 0.90264 0.92677 0.92757
0.90067 0.90198 0.89004 0.92204 0.91916 0.88332 0.89307 0.89666
0.95049 0.93587
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.91 -28.29 13.70 55.49 0.76 -27.53 16
2 C -0.01 -0.37 5.41 -17.43 -0.09 -0.46 16
3 Si 1.05 26.35 24.73 -169.99 -4.20 22.15 16
4 H -0.29 -6.82 6.73 56.52 0.38 -6.44 16
5 H -0.29 -7.01 6.87 56.52 0.39 -6.62 16
6 H -0.30 -7.65 7.11 56.52 0.40 -7.25 16
7 C -0.33 -9.40 10.41 -15.06 -0.16 -9.55 16
8 H 0.08 2.31 8.06 -52.48 -0.42 1.88 16
9 N -0.61 -14.34 3.30 -170.35 -0.56 -14.90 16
10 C 0.12 2.44 5.01 -2.85 -0.01 2.42 16
11 C -0.11 -1.63 6.36 -25.55 -0.16 -1.80 16
12 C -0.11 -1.57 0.99 -154.72 -0.15 -1.72 16
13 C 0.11 1.16 7.99 -3.60 -0.03 1.14 16
14 N -0.64 -8.68 3.62 -186.91 -0.68 -9.35 16
15 C 0.53 7.94 8.13 -10.99 -0.09 7.85 16
16 O -0.52 -10.27 17.22 -14.35 -0.25 -10.52 16
17 C 0.05 0.55 6.16 36.00 0.22 0.77 16
18 O -0.36 -4.32 9.79 -55.14 -0.54 -4.86 16
19 C 0.07 0.55 5.08 37.16 0.19 0.73 16
20 C -0.12 -0.97 3.39 -89.06 -0.30 -1.27 16
21 H 0.09 0.83 8.14 -51.92 -0.42 0.41 16
22 C -0.15 -0.86 6.74 -25.17 -0.17 -1.03 16
23 C 0.04 0.30 7.63 37.93 0.29 0.58 16
24 O -0.38 -3.96 11.65 -35.23 -0.41 -4.37 16
25 C 0.05 0.51 7.10 37.93 0.27 0.78 16
26 C 0.13 1.95 8.16 -3.60 -0.03 1.92 16
27 C 0.16 3.02 6.65 -3.04 -0.02 3.00 16
28 H 0.26 8.11 8.73 -40.82 -0.36 7.75 16
29 H 0.03 0.59 3.70 -51.93 -0.19 0.40 16
30 H 0.04 0.88 7.99 -51.93 -0.41 0.47 16
31 H 0.07 0.87 7.99 -51.93 -0.41 0.46 16
32 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16
33 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16
34 H 0.08 0.72 8.12 -51.93 -0.42 0.30 16
35 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16
36 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16
37 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16
38 H 0.05 0.36 7.96 -51.93 -0.41 -0.05 16
39 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16
40 H 0.08 0.33 7.73 -51.93 -0.40 -0.07 16
41 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16
42 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16
43 H 0.06 0.59 7.74 -51.93 -0.40 0.19 16
44 H 0.10 1.03 8.14 -51.93 -0.42 0.60 16
45 H 0.09 1.58 8.13 -51.93 -0.42 1.16 16
46 H 0.09 1.10 8.04 -51.92 -0.42 0.68 16
47 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16
48 H 0.05 0.93 8.08 -51.93 -0.42 0.51 16
LS Contribution 381.77 15.07 5.75 5.75
Total: -1.00 -36.08 381.77 -8.56 -44.64
By element:
Atomic # 1 Polarization: 3.80 SS G_CDS: -8.18 Total: -4.38 kcal
Atomic # 6 Polarization: 3.62 SS G_CDS: -0.25 Total: 3.37 kcal
Atomic # 7 Polarization: -51.31 SS G_CDS: -0.48 Total: -51.78 kcal
Atomic # 8 Polarization: -18.55 SS G_CDS: -1.20 Total: -19.75 kcal
Atomic # 14 Polarization: 26.35 SS G_CDS: -4.20 Total: 22.15 kcal
Total LS contribution 5.75 Total: 5.75 kcal
Total: -36.08 -8.56 -44.64 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001148378573.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -7.509 kcal
(2) G-P(sol) polarization free energy of solvation -36.084 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.594 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.556 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.641 kcal
(6) G-S(sol) free energy of system = (1) + (5) -52.150 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.82 seconds