Wall clock time and date at job start Tue Mar 31 2020 13:59:39
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31621 * 1
3 3 Si 1.86801 * 120.00225 * 2 1
4 4 H 1.48503 * 109.47014 * 95.30067 * 3 2 1
5 5 H 1.48500 * 109.47165 * 215.30085 * 3 2 1
6 6 H 1.48498 * 109.47153 * 335.30258 * 3 2 1
7 7 C 1.38809 * 119.99746 * 180.02562 * 2 1 3
8 8 H 1.08003 * 120.00335 * 28.95331 * 7 2 1
9 9 N 1.36942 * 120.00066 * 208.95446 * 7 2 1
10 10 C 1.47140 * 125.58430 * 9.83259 * 9 7 2
11 11 C 1.54604 * 107.36220 * 180.92557 * 10 9 7
12 12 C 1.53651 * 102.73305 * 20.75479 * 11 10 9
13 13 C 1.52375 * 116.39973 * 197.07904 * 12 11 10
14 14 N 1.47894 * 85.58542 * 218.64855 * 13 12 11
15 15 C 1.34781 * 134.33381 * 203.43922 * 14 13 12
16 16 O 1.21283 * 119.99433 * 180.02562 * 15 14 13
17 17 C 1.50696 * 120.00364 * 0.06325 * 15 14 13
18 18 O 1.42902 * 109.47273 * 179.97438 * 17 15 14
19 19 C 1.42899 * 114.00264 * 180.02562 * 18 17 15
20 20 C 1.52998 * 109.47273 * 179.97438 * 19 18 17
21 21 H 1.09013 * 110.45460 * 52.39691 * 20 19 18
22 22 C 1.54506 * 110.51209 * 174.99684 * 20 19 18
23 23 C 1.54475 * 104.06159 * 118.64685 * 22 20 19
24 24 O 1.44422 * 104.80452 * 23.98158 * 23 22 20
25 25 C 1.44431 * 105.27246 * 319.48534 * 24 23 22
26 26 C 1.47880 * 91.32063 * 23.48475 * 14 13 12
27 27 C 1.47723 * 125.58634 * 189.52213 * 9 7 2
28 28 H 0.96992 * 120.00539 * 184.81697 * 1 2 3
29 29 H 1.08993 * 109.86427 * 300.37569 * 10 9 7
30 30 H 1.09000 * 109.86891 * 61.34551 * 10 9 7
31 31 H 1.09000 * 110.75657 * 139.06289 * 11 10 9
32 32 H 1.09001 * 110.75930 * 262.44009 * 11 10 9
33 33 H 1.08993 * 113.85072 * 332.81439 * 13 12 11
34 34 H 1.08998 * 113.85098 * 104.48328 * 13 12 11
35 35 H 1.09002 * 109.47338 * 299.99973 * 17 15 14
36 36 H 1.09003 * 109.46984 * 60.00142 * 17 15 14
37 37 H 1.09000 * 109.46922 * 300.00245 * 19 18 17
38 38 H 1.08994 * 109.47103 * 59.99900 * 19 18 17
39 39 H 1.08997 * 110.51354 * 237.29251 * 22 20 19
40 40 H 1.08999 * 110.51060 * 359.86168 * 22 20 19
41 41 H 1.09007 * 110.37418 * 142.80977 * 23 22 20
42 42 H 1.09001 * 110.37029 * 265.14861 * 23 22 20
43 43 H 1.08998 * 110.37433 * 281.68224 * 25 24 23
44 44 H 1.08999 * 110.36836 * 159.34492 * 25 24 23
45 45 H 1.08994 * 113.85473 * 222.34660 * 26 14 13
46 46 H 1.09008 * 113.85352 * 90.67893 * 26 14 13
47 47 H 1.08995 * 110.40141 * 276.33344 * 27 9 7
48 48 H 1.08993 * 110.40093 * 38.75309 * 27 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2503 1.6177 0.0000
4 1 2.6098 1.9817 1.3941
5 1 3.4873 1.4750 -0.8091
6 1 1.3963 2.6824 -0.5850
7 6 2.0102 -1.2022 -0.0005
8 1 1.5714 -2.0788 -0.4537
9 7 3.2512 -1.2766 0.5736
10 6 3.8778 -0.2306 1.3972
11 6 5.2784 -0.7421 1.8055
12 6 5.5645 -1.8233 0.7520
13 6 6.6780 -2.8106 1.0795
14 7 7.0288 -2.7149 -0.3541
15 6 7.6804 -3.5163 -1.2198
16 8 7.8261 -3.1713 -2.3734
17 6 8.2272 -4.8413 -0.7548
18 8 8.8695 -5.5016 -1.8474
19 6 9.4252 -6.7746 -1.5118
20 6 10.0828 -7.3865 -2.7503
21 1 10.7838 -6.6813 -3.1972
22 6 10.8002 -8.7057 -2.3864
23 6 10.0767 -9.7733 -3.2367
24 8 9.5138 -9.0413 -4.3472
25 6 9.0108 -7.8131 -3.7774
26 6 6.3811 -1.3896 -0.4592
27 6 4.1777 -2.4228 0.4728
28 1 -0.4850 -0.8370 0.0705
29 1 3.9729 0.6885 0.8192
30 1 3.2742 -0.0480 2.2863
31 1 6.0148 0.0594 1.7463
32 1 5.2555 -1.1740 2.8061
33 1 7.4402 -2.4096 1.7475
34 1 6.3197 -3.7949 1.3809
35 1 8.9489 -4.6760 0.0452
36 1 7.4108 -5.4618 -0.3851
37 1 10.1719 -6.6497 -0.7276
38 1 8.6335 -7.4347 -1.1577
39 1 11.8551 -8.6536 -2.6555
40 1 10.6884 -8.9206 -1.3237
41 1 10.7870 -10.5186 -3.5947
42 1 9.2863 -10.2491 -2.6561
43 1 8.0570 -7.9883 -3.2798
44 1 8.9023 -7.0527 -4.5507
45 1 5.7900 -1.2585 -1.3654
46 1 7.0526 -0.5539 -0.2617
47 1 3.9302 -3.1781 1.2186
48 1 4.1444 -2.8513 -0.5288
RHF calculation, no. of doubly occupied orbitals= 62
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001148378573.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:59:39
Heat of formation + Delta-G solvation = -79.328587 kcal
Electronic energy + Delta-G solvation = -27628.127935 eV
Core-core repulsion = 23684.574829 eV
Total energy + Delta-G solvation = -3943.553107 eV
No. of doubly occupied orbitals = 62
Molecular weight
(most abundant/longest-lived isotopes) = 324.188 amu
Computer time = 0.81 seconds
Orbital eigenvalues (eV)
-41.87226 -40.60530 -39.84344 -38.34277 -37.39556 -34.47292 -33.95328 -31.96418
-30.73796 -30.25917 -29.10877 -27.37838 -27.12458 -26.05370 -24.75444 -23.66287
-22.57305 -21.55468 -20.67563 -19.78069 -19.30576 -18.38261 -17.84347 -17.53819
-17.27591 -16.99964 -16.84015 -16.58459 -16.46054 -15.99878 -15.95538 -15.43415
-15.22296 -15.09871 -14.61866 -14.24996 -14.07374 -13.79330 -13.52904 -13.43514
-13.21695 -13.03776 -12.99277 -12.84726 -12.70259 -12.66089 -12.25902 -11.96428
-11.92257 -11.88400 -11.75632 -11.56899 -11.50092 -11.07842 -10.82996 -10.75160
-10.69883 -10.58240 -9.77538 -9.11376 -8.69710 -5.40964 1.38741 1.49066
1.52215 1.53683 1.71351 2.53370 2.65831 2.99177 3.03424 3.20808
3.37418 3.53975 3.59439 3.62375 3.77853 3.92721 3.94221 4.04918
4.14529 4.17299 4.24994 4.31457 4.32671 4.36912 4.39698 4.46254
4.58010 4.61065 4.62321 4.71320 4.76684 4.78847 4.81122 4.82691
4.88967 4.91387 5.01231 5.04100 5.06221 5.14677 5.20589 5.31683
5.57949 5.80080 6.06598 6.10982 6.65095 6.82379 7.07505 7.48029
8.12592 8.81465
Molecular weight = 324.19amu
Principal moments of inertia in cm(-1)
A = 0.023614 B = 0.002248 C = 0.002167
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1185.452268 B =12454.798298 C =12916.134902
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.950 5.950
2 C -0.072 4.072
3 Si 1.101 2.899
4 H -0.261 1.261
5 H -0.281 1.281
6 H -0.310 1.310
7 C -0.323 4.323
8 H 0.040 0.960
9 N -0.631 5.631
10 C 0.104 3.896
11 C -0.096 4.096
12 C -0.104 4.104
13 C 0.135 3.865
14 N -0.643 5.643
15 C 0.522 3.478
16 O -0.588 6.588
17 C 0.059 3.941
18 O -0.400 6.400
19 C 0.068 3.932
20 C -0.121 4.121
21 H 0.081 0.919
22 C -0.138 4.138
23 C 0.034 3.966
24 O -0.406 6.406
25 C 0.049 3.951
26 C 0.119 3.881
27 C 0.156 3.844
28 H 0.250 0.750
29 H 0.016 0.984
30 H 0.030 0.970
31 H 0.107 0.893
32 H 0.110 0.890
33 H 0.137 0.863
34 H 0.110 0.890
35 H 0.118 0.882
36 H 0.102 0.898
37 H 0.082 0.918
38 H 0.069 0.931
39 H 0.088 0.912
40 H 0.105 0.895
41 H 0.105 0.895
42 H 0.070 0.930
43 H 0.062 0.938
44 H 0.077 0.923
45 H 0.042 0.958
46 H 0.113 0.887
47 H 0.047 0.953
48 H 0.016 0.984
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 27.166 -16.003 7.732 32.463
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.592 5.592
2 C -0.267 4.267
3 Si 0.929 3.071
4 H -0.187 1.187
5 H -0.208 1.208
6 H -0.239 1.239
7 C -0.452 4.452
8 H 0.058 0.942
9 N -0.359 5.359
10 C -0.020 4.020
11 C -0.134 4.134
12 C -0.106 4.106
13 C 0.014 3.986
14 N -0.380 5.380
15 C 0.313 3.687
16 O -0.469 6.469
17 C -0.020 4.020
18 O -0.319 6.319
19 C -0.008 4.008
20 C -0.140 4.140
21 H 0.099 0.901
22 C -0.176 4.176
23 C -0.042 4.042
24 O -0.326 6.326
25 C -0.028 4.028
26 C -0.003 4.003
27 C 0.032 3.968
28 H 0.059 0.941
29 H 0.034 0.966
30 H 0.048 0.952
31 H 0.125 0.875
32 H 0.128 0.872
33 H 0.155 0.845
34 H 0.128 0.872
35 H 0.135 0.865
36 H 0.120 0.880
37 H 0.100 0.900
38 H 0.087 0.913
39 H 0.107 0.893
40 H 0.123 0.877
41 H 0.123 0.877
42 H 0.088 0.912
43 H 0.081 0.919
44 H 0.095 0.905
45 H 0.061 0.939
46 H 0.131 0.869
47 H 0.065 0.935
48 H 0.035 0.965
Dipole moment (debyes) X Y Z Total
from point charges 27.093 -14.365 6.473 31.341
hybrid contribution -1.005 -1.552 -0.527 1.923
sum 26.088 -15.917 5.946 31.133
Atomic orbital electron populations
1.70991 1.07442 1.28531 1.52270 1.26995 0.96165 1.04207 0.99295
0.83339 0.73193 0.72649 0.77932 1.18698 1.20791 1.23939 1.19863
0.92233 0.96641 1.36434 0.94250 1.44998 1.15810 1.16742 1.58348
1.21928 0.95106 0.91616 0.93376 1.22374 0.94126 0.97947 0.98933
1.22429 0.94057 0.98000 0.96072 1.23358 0.93985 1.00746 0.80487
1.50226 1.55171 1.19771 1.12784 1.20776 0.76758 0.86581 0.84598
1.90708 1.59378 1.76167 1.20598 1.22193 0.99286 0.90224 0.90280
1.87979 1.74996 1.33812 1.35128 1.22810 0.97795 0.83345 0.96831
1.22509 0.97549 0.98217 0.95691 0.90054 1.22922 1.00631 0.91725
1.02281 1.23683 0.97612 0.95199 0.87720 1.89117 1.78513 1.32338
1.32616 1.23472 0.96604 0.86125 0.96595 1.23051 0.93073 0.86347
0.97818 1.21306 0.87585 0.90198 0.97756 0.94138 0.96611 0.95229
0.87497 0.87208 0.84486 0.87185 0.86477 0.87983 0.89961 0.91287
0.89291 0.87685 0.87666 0.91188 0.91940 0.90495 0.93907 0.86899
0.93523 0.96543
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.95 -61.62 13.70 21.65 0.30 -61.32 16
2 C -0.07 -4.34 5.41 84.86 0.46 -3.88 16
3 Si 1.10 54.11 24.73 68.60 1.70 55.81 16
4 H -0.26 -11.36 6.73 99.48 0.67 -10.69 16
5 H -0.28 -13.07 6.87 99.48 0.68 -12.38 16
6 H -0.31 -15.70 7.11 99.48 0.71 -14.99 16
7 C -0.32 -19.01 10.41 84.03 0.87 -18.13 16
8 H 0.04 2.53 8.06 -2.91 -0.02 2.51 16
9 N -0.63 -29.84 3.30 -692.87 -2.29 -32.12 16
10 C 0.10 4.01 5.01 86.80 0.44 4.44 16
11 C -0.10 -2.22 6.36 31.36 0.20 -2.02 16
12 C -0.10 -2.59 0.99 -52.07 -0.05 -2.64 16
13 C 0.14 1.95 7.99 85.90 0.69 2.63 16
14 N -0.64 -15.46 3.62 -863.66 -3.12 -18.59 16
15 C 0.52 14.72 8.13 87.66 0.71 15.43 16
16 O -0.59 -23.73 17.22 16.00 0.28 -23.45 16
17 C 0.06 1.03 6.16 71.23 0.44 1.47 16
18 O -0.40 -8.85 9.79 -129.94 -1.27 -10.12 16
19 C 0.07 0.87 5.08 71.98 0.37 1.24 16
20 C -0.12 -1.79 3.39 -9.78 -0.03 -1.82 16
21 H 0.08 1.40 8.14 -2.38 -0.02 1.38 16
22 C -0.14 -1.23 6.74 31.61 0.21 -1.02 16
23 C 0.03 0.41 7.63 72.48 0.55 0.96 16
24 O -0.41 -8.59 11.65 -148.98 -1.74 -10.32 16
25 C 0.05 0.97 7.10 72.48 0.51 1.48 16
26 C 0.12 3.32 8.16 85.91 0.70 4.02 16
27 C 0.16 5.73 6.65 86.36 0.57 6.30 16
28 H 0.25 16.28 8.73 -92.71 -0.81 15.47 16
29 H 0.02 0.67 3.70 -2.39 -0.01 0.66 16
30 H 0.03 1.21 7.99 -2.39 -0.02 1.19 16
31 H 0.11 1.85 7.99 -2.39 -0.02 1.83 16
32 H 0.11 1.90 8.14 -2.39 -0.02 1.88 16
33 H 0.14 0.89 8.14 -2.39 -0.02 0.87 16
34 H 0.11 1.13 8.12 -2.39 -0.02 1.11 16
35 H 0.12 1.11 8.14 -2.39 -0.02 1.09 16
36 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16
37 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16
38 H 0.07 0.68 7.96 -2.39 -0.02 0.66 16
39 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16
40 H 0.10 0.43 7.73 -2.39 -0.02 0.41 16
41 H 0.11 0.94 8.14 -2.38 -0.02 0.92 16
42 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16
43 H 0.06 1.19 7.74 -2.39 -0.02 1.17 16
44 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16
45 H 0.04 1.57 8.13 -2.39 -0.02 1.55 16
46 H 0.11 2.52 8.04 -2.38 -0.02 2.50 16
47 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16
48 H 0.02 0.68 8.08 -2.39 -0.02 0.66 16
Total: -1.00 -88.68 381.77 1.33 -87.36
By element:
Atomic # 1 Polarization: 3.46 SS G_CDS: 0.83 Total: 4.29 kcal
Atomic # 6 Polarization: 1.83 SS G_CDS: 6.64 Total: 8.47 kcal
Atomic # 7 Polarization: -106.92 SS G_CDS: -5.11 Total: -112.03 kcal
Atomic # 8 Polarization: -41.16 SS G_CDS: -2.73 Total: -43.90 kcal
Atomic # 14 Polarization: 54.11 SS G_CDS: 1.70 Total: 55.81 kcal
Total: -88.68 1.33 -87.36 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001148378573.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 8.026 kcal
(2) G-P(sol) polarization free energy of solvation -88.683 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.657 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.328 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.355 kcal
(6) G-S(sol) free energy of system = (1) + (5) -79.329 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.81 seconds