Wall clock time and date at job start Tue Mar 31 2020 13:56:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86802 * 119.99618 * 2 1 4 4 H 1.48499 * 109.47217 * 275.55461 * 3 2 1 5 5 H 1.48494 * 109.47416 * 35.55382 * 3 2 1 6 6 H 1.48505 * 109.47028 * 155.55726 * 3 2 1 7 7 C 1.38806 * 120.00325 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99897 * 336.58165 * 7 2 1 9 9 N 1.36939 * 120.00345 * 156.57707 * 7 2 1 10 10 C 1.43428 * 120.63243 * 320.50935 * 9 7 2 11 11 C 1.55328 * 116.23717 * 269.32462 * 10 9 7 12 12 C 1.55198 * 108.87281 * 319.46535 * 11 10 9 13 13 O 1.39639 * 110.56945 * 322.14763 * 12 11 10 14 14 C 1.42374 * 108.63894 * 101.16925 * 13 12 11 15 15 H 1.08998 * 108.61989 * 28.42488 * 14 13 12 16 16 C 1.53003 * 108.62287 * 146.34188 * 14 13 12 17 17 N 1.46499 * 109.46807 * 302.05726 * 16 14 13 18 18 C 1.34777 * 120.00072 * 179.97438 * 17 16 14 19 19 O 1.21278 * 120.00055 * 0.02562 * 18 17 16 20 20 C 1.50700 * 120.00096 * 179.97438 * 18 17 16 21 21 C 1.50703 * 109.46957 * 179.97438 * 20 18 17 22 22 C 1.29990 * 118.74028 * 95.00147 * 21 20 18 23 23 C 1.50234 * 122.86269 * 180.38455 * 22 21 20 24 24 O 1.42907 * 110.13660 * 344.40154 * 23 22 21 25 25 C 1.43299 * 113.01630 * 50.17937 * 24 23 22 26 26 C 1.50377 * 118.74450 * 274.72863 * 21 20 18 27 27 C 1.46925 * 113.68188 * 267.38451 * 14 13 12 28 28 H 0.97000 * 120.00034 * 0.02562 * 1 2 3 29 29 H 1.08996 * 108.12570 * 147.57167 * 10 9 7 30 30 H 1.09000 * 108.12965 * 31.08370 * 10 9 7 31 31 H 1.08996 * 109.57385 * 199.65666 * 11 10 9 32 32 H 1.08993 * 109.57314 * 79.28167 * 11 10 9 33 33 H 1.08997 * 109.26052 * 201.86027 * 12 11 10 34 34 H 1.09001 * 109.25507 * 82.42127 * 12 11 10 35 35 H 1.08991 * 109.47499 * 182.05664 * 16 14 13 36 36 H 1.08996 * 109.46813 * 62.05242 * 16 14 13 37 37 H 0.97007 * 119.99990 * 359.97438 * 17 16 14 38 38 H 1.08995 * 109.47368 * 60.00107 * 20 18 17 39 39 H 1.08998 * 109.47235 * 300.00269 * 20 18 17 40 40 H 1.07997 * 118.57133 * 0.36605 * 22 21 20 41 41 H 1.08998 * 109.35678 * 104.60441 * 23 22 21 42 42 H 1.08998 * 109.36060 * 224.33267 * 23 22 21 43 43 H 1.09001 * 109.68539 * 51.52486 * 25 24 23 44 44 H 1.08999 * 109.68381 * 172.03516 * 25 24 23 45 45 H 1.08997 * 109.45826 * 283.43499 * 26 21 20 46 46 H 1.09001 * 109.45243 * 43.36089 * 26 21 20 47 47 H 1.08998 * 109.98555 * 176.19659 * 27 14 13 48 48 H 1.09004 * 109.98809 * 297.55494 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3802 2.1143 -1.3935 5 1 1.5112 2.6160 0.8141 6 1 3.6015 1.4093 0.5793 7 6 2.0103 -1.2021 -0.0005 8 1 1.5371 -2.0990 0.3708 9 7 3.2951 -1.2507 -0.4720 10 6 3.6766 -0.4995 -1.6327 11 6 3.5360 -1.2267 -2.9980 12 6 4.0029 -2.6976 -2.8338 13 8 5.1037 -2.7703 -1.9777 14 6 4.6554 -3.1962 -0.6952 15 1 3.7644 -3.8107 -0.8243 16 6 5.7495 -4.0528 -0.0548 17 7 6.0506 -5.1915 -0.9259 18 6 6.9900 -6.0874 -0.5633 19 8 7.5857 -5.9511 0.4843 20 6 7.2993 -7.2591 -1.4591 21 6 8.3780 -8.1021 -0.8290 22 6 8.0300 -9.1297 -0.1130 23 6 9.0269 -10.0273 0.5635 24 8 10.3308 -9.8124 0.0196 25 6 10.6999 -8.4284 -0.0208 26 6 9.8159 -7.7259 -1.0576 27 6 4.3335 -2.0888 0.2152 28 1 -0.4850 0.8400 -0.0004 29 1 4.7174 -0.1981 -1.5146 30 1 3.0691 0.4049 -1.6661 31 1 4.1561 -0.7280 -3.7429 32 1 2.4937 -1.2079 -3.3162 33 1 4.2789 -3.0983 -3.8091 34 1 3.1864 -3.2899 -2.4205 35 1 5.4060 -4.4168 0.9134 36 1 6.6485 -3.4517 0.0812 37 1 5.5739 -5.3007 -1.7636 38 1 7.6423 -6.8955 -2.4276 39 1 6.4003 -7.8604 -1.5944 40 1 6.9783 -9.3477 0.0007 41 1 9.0408 -9.8113 1.6317 42 1 8.7399 -11.0674 0.4088 43 1 10.5486 -7.9792 0.9607 44 1 11.7470 -8.3359 -0.3091 45 1 10.1157 -8.0298 -2.0605 46 1 9.9291 -6.6465 -0.9568 47 1 3.9346 -2.4799 1.1511 48 1 5.2264 -1.4943 0.4091 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001150276061.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:56:24 Heat of formation + Delta-G solvation = -80.372199 kcal Electronic energy + Delta-G solvation = -28061.490434 eV Core-core repulsion = 24117.892073 eV Total energy + Delta-G solvation = -3943.598361 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.27456 -39.58343 -38.87560 -35.42675 -35.09801 -34.63828 -32.36578 -31.79991 -31.34634 -29.83624 -28.66798 -26.04841 -25.49201 -24.45066 -23.84673 -22.46390 -21.27075 -20.50475 -20.04222 -18.31914 -17.36693 -17.07310 -16.76333 -16.53711 -16.07118 -15.78120 -15.66526 -15.28226 -15.22553 -14.61588 -14.45166 -14.11589 -13.99679 -13.50285 -13.31403 -13.20512 -13.06999 -12.80414 -12.60755 -12.49001 -12.40232 -12.16125 -11.94120 -11.68872 -11.50736 -11.27693 -10.84619 -10.82443 -10.56924 -10.44299 -10.25751 -10.05144 -9.89240 -9.79031 -9.67126 -9.12362 -9.08288 -9.01456 -8.55793 -6.89146 -6.10747 -3.55555 1.80552 2.59701 3.24850 3.27631 3.42190 3.49186 3.61128 4.18621 4.34371 4.41978 4.45080 4.69840 4.71338 4.81511 4.96080 5.05663 5.10170 5.14169 5.17902 5.23239 5.31362 5.31499 5.34475 5.49160 5.54862 5.55423 5.66615 5.67906 5.74238 5.80280 5.93482 5.98633 6.10064 6.19522 6.20437 6.43046 6.43538 6.52383 6.55745 6.56222 6.74306 6.80884 6.84923 7.47478 7.57382 7.97695 8.18728 8.24114 8.89157 9.60155 10.04830 11.04067 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.030506 B = 0.002306 C = 0.002272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.636506 B =12138.364512 C =12321.128515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.043 3.957 3 Si 0.879 3.121 4 H -0.285 1.285 5 H -0.300 1.300 6 H -0.269 1.269 7 C -0.275 4.275 8 H 0.076 0.924 9 N -0.599 5.599 10 C 0.151 3.849 11 C -0.168 4.168 12 C 0.065 3.935 13 O -0.356 6.356 14 C 0.063 3.937 15 H 0.069 0.931 16 C 0.116 3.884 17 N -0.720 5.720 18 C 0.512 3.488 19 O -0.539 6.539 20 C -0.109 4.109 21 C -0.087 4.087 22 C -0.192 4.192 23 C 0.093 3.907 24 O -0.382 6.382 25 C 0.060 3.940 26 C -0.116 4.116 27 C 0.112 3.888 28 H 0.265 0.735 29 H 0.032 0.968 30 H 0.043 0.957 31 H 0.055 0.945 32 H 0.066 0.934 33 H 0.061 0.939 34 H 0.058 0.942 35 H 0.078 0.922 36 H 0.072 0.928 37 H 0.402 0.598 38 H 0.101 0.899 39 H 0.099 0.901 40 H 0.115 0.885 41 H 0.063 0.937 42 H 0.101 0.899 43 H 0.058 0.942 44 H 0.096 0.904 45 H 0.081 0.919 46 H 0.084 0.916 47 H 0.081 0.919 48 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.914 -16.288 -4.796 23.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.159 4.159 3 Si 0.709 3.291 4 H -0.213 1.213 5 H -0.228 1.228 6 H -0.194 1.194 7 C -0.404 4.404 8 H 0.094 0.906 9 N -0.321 5.321 10 C 0.024 3.976 11 C -0.209 4.209 12 C -0.012 4.012 13 O -0.274 6.274 14 C 0.003 3.997 15 H 0.087 0.913 16 C -0.008 4.008 17 N -0.372 5.372 18 C 0.298 3.702 19 O -0.416 6.416 20 C -0.149 4.149 21 C -0.087 4.087 22 C -0.211 4.211 23 C 0.017 3.983 24 O -0.301 6.301 25 C -0.017 4.017 26 C -0.153 4.153 27 C -0.013 4.013 28 H 0.074 0.926 29 H 0.050 0.950 30 H 0.061 0.939 31 H 0.074 0.926 32 H 0.085 0.915 33 H 0.079 0.921 34 H 0.076 0.924 35 H 0.096 0.904 36 H 0.091 0.909 37 H 0.236 0.764 38 H 0.119 0.881 39 H 0.117 0.883 40 H 0.133 0.867 41 H 0.081 0.919 42 H 0.119 0.881 43 H 0.077 0.923 44 H 0.114 0.886 45 H 0.100 0.900 46 H 0.103 0.897 47 H 0.099 0.901 48 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 16.470 -16.168 -4.093 23.439 hybrid contribution -0.572 1.335 -0.437 1.517 sum 15.898 -14.833 -4.530 22.210 Atomic orbital electron populations 1.69880 1.06084 1.26983 1.50463 1.25526 0.95040 0.97981 0.97376 0.86881 0.80741 0.84417 0.77077 1.21309 1.22809 1.19361 1.18685 0.86479 0.94356 1.40831 0.90642 1.44100 1.07325 1.55306 1.25362 1.20625 0.97386 0.93692 0.85943 1.23495 1.00758 0.96627 1.00053 1.22429 0.88594 0.97169 0.93035 1.87594 1.30993 1.88563 1.20256 1.21994 0.95173 0.96196 0.86316 0.91310 1.21697 0.99199 0.86450 0.93450 1.45935 1.40339 1.26123 1.24793 1.20497 0.79416 0.83381 0.86876 1.90704 1.50506 1.75779 1.24660 1.20814 0.99201 0.95440 0.99472 1.20380 0.94796 0.95007 0.98565 1.22685 1.00517 0.97906 0.99969 1.21389 0.81435 0.99069 0.96454 1.88095 1.32545 1.25114 1.84346 1.22671 0.98716 0.81743 0.98549 1.21061 0.92181 1.01663 1.00411 1.21044 0.92953 0.92292 0.94989 0.92552 0.94972 0.93929 0.92623 0.91532 0.92114 0.92378 0.90376 0.90918 0.76411 0.88120 0.88261 0.86692 0.91888 0.88137 0.92342 0.88584 0.90045 0.89724 0.90084 0.93826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.44 13.97 55.49 0.78 -25.66 16 2 C 0.04 1.19 5.27 -17.43 -0.09 1.10 16 3 Si 0.88 21.95 25.24 -169.99 -4.29 17.66 16 4 H -0.29 -6.98 6.73 56.52 0.38 -6.59 16 5 H -0.30 -7.59 7.11 56.52 0.40 -7.19 16 6 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.28 -7.34 9.94 -15.06 -0.15 -7.49 16 8 H 0.08 2.16 8.06 -52.48 -0.42 1.73 16 9 N -0.60 -13.58 2.16 -174.52 -0.38 -13.96 16 10 C 0.15 3.25 4.29 -4.43 -0.02 3.23 16 11 C -0.17 -3.04 6.75 -24.33 -0.16 -3.20 16 12 C 0.07 1.02 6.38 38.32 0.24 1.26 16 13 O -0.36 -5.67 9.44 -31.93 -0.30 -5.97 16 14 C 0.06 0.97 2.13 -29.64 -0.06 0.91 16 15 H 0.07 1.09 6.77 -51.93 -0.35 0.74 16 16 C 0.12 1.58 5.25 -4.04 -0.02 1.56 16 17 N -0.72 -8.38 5.41 -60.30 -0.33 -8.71 16 18 C 0.51 6.23 7.82 -10.99 -0.09 6.15 16 19 O -0.54 -8.59 16.03 5.56 0.09 -8.50 16 20 C -0.11 -0.95 5.77 -29.03 -0.17 -1.12 16 21 C -0.09 -0.85 4.40 -100.94 -0.44 -1.30 16 22 C -0.19 -1.81 9.54 -35.97 -0.34 -2.16 16 23 C 0.09 0.82 7.04 35.78 0.25 1.07 16 24 O -0.38 -3.99 10.84 -35.23 -0.38 -4.37 16 25 C 0.06 0.54 6.90 37.31 0.26 0.80 16 26 C -0.12 -1.06 6.10 -27.89 -0.17 -1.23 16 27 C 0.11 2.08 5.58 -4.94 -0.03 2.05 16 28 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 29 H 0.03 0.67 7.98 -51.93 -0.41 0.25 16 30 H 0.04 1.01 3.45 -51.93 -0.18 0.83 16 31 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 33 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 34 H 0.06 0.95 6.66 -51.93 -0.35 0.60 16 35 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 36 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.40 3.92 8.26 -40.82 -0.34 3.58 16 38 H 0.10 0.70 8.13 -51.93 -0.42 0.28 16 39 H 0.10 0.68 7.87 -51.93 -0.41 0.27 16 40 H 0.12 0.95 7.83 -52.49 -0.41 0.54 16 41 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.06 0.56 8.10 -51.93 -0.42 0.14 16 44 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 46 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 47 H 0.08 1.47 8.00 -51.93 -0.42 1.05 16 48 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 LS Contribution 376.17 15.07 5.67 5.67 Total: -1.00 -32.48 376.17 -8.07 -40.56 By element: Atomic # 1 Polarization: 9.57 SS G_CDS: -7.93 Total: 1.64 kcal Atomic # 6 Polarization: 2.64 SS G_CDS: -0.99 Total: 1.64 kcal Atomic # 7 Polarization: -48.40 SS G_CDS: 0.07 Total: -48.32 kcal Atomic # 8 Polarization: -18.24 SS G_CDS: -0.59 Total: -18.84 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -4.29 Total: 17.66 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -32.48 -8.07 -40.56 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001150276061.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.817 kcal (2) G-P(sol) polarization free energy of solvation -32.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds