Wall clock time and date at job start Tue Mar 31 2020 13:56:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86802 * 119.99618 * 2 1 4 4 H 1.48499 * 109.47217 * 275.55461 * 3 2 1 5 5 H 1.48494 * 109.47416 * 35.55382 * 3 2 1 6 6 H 1.48505 * 109.47028 * 155.55726 * 3 2 1 7 7 C 1.38806 * 120.00325 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99897 * 336.58165 * 7 2 1 9 9 N 1.36939 * 120.00345 * 156.57707 * 7 2 1 10 10 C 1.43428 * 120.63243 * 320.50935 * 9 7 2 11 11 C 1.55328 * 116.23717 * 269.32462 * 10 9 7 12 12 C 1.55198 * 108.87281 * 319.46535 * 11 10 9 13 13 O 1.39639 * 110.56945 * 322.14763 * 12 11 10 14 14 C 1.42374 * 108.63894 * 101.16925 * 13 12 11 15 15 H 1.08998 * 108.61989 * 28.42488 * 14 13 12 16 16 C 1.53003 * 108.62287 * 146.34188 * 14 13 12 17 17 N 1.46499 * 109.46807 * 302.05726 * 16 14 13 18 18 C 1.34777 * 120.00072 * 179.97438 * 17 16 14 19 19 O 1.21278 * 120.00055 * 0.02562 * 18 17 16 20 20 C 1.50700 * 120.00096 * 179.97438 * 18 17 16 21 21 C 1.50703 * 109.46957 * 179.97438 * 20 18 17 22 22 C 1.29990 * 118.74028 * 95.00147 * 21 20 18 23 23 C 1.50234 * 122.86269 * 180.38455 * 22 21 20 24 24 O 1.42907 * 110.13660 * 344.40154 * 23 22 21 25 25 C 1.43299 * 113.01630 * 50.17937 * 24 23 22 26 26 C 1.50377 * 118.74450 * 274.72863 * 21 20 18 27 27 C 1.46925 * 113.68188 * 267.38451 * 14 13 12 28 28 H 0.97000 * 120.00034 * 0.02562 * 1 2 3 29 29 H 1.08996 * 108.12570 * 147.57167 * 10 9 7 30 30 H 1.09000 * 108.12965 * 31.08370 * 10 9 7 31 31 H 1.08996 * 109.57385 * 199.65666 * 11 10 9 32 32 H 1.08993 * 109.57314 * 79.28167 * 11 10 9 33 33 H 1.08997 * 109.26052 * 201.86027 * 12 11 10 34 34 H 1.09001 * 109.25507 * 82.42127 * 12 11 10 35 35 H 1.08991 * 109.47499 * 182.05664 * 16 14 13 36 36 H 1.08996 * 109.46813 * 62.05242 * 16 14 13 37 37 H 0.97007 * 119.99990 * 359.97438 * 17 16 14 38 38 H 1.08995 * 109.47368 * 60.00107 * 20 18 17 39 39 H 1.08998 * 109.47235 * 300.00269 * 20 18 17 40 40 H 1.07997 * 118.57133 * 0.36605 * 22 21 20 41 41 H 1.08998 * 109.35678 * 104.60441 * 23 22 21 42 42 H 1.08998 * 109.36060 * 224.33267 * 23 22 21 43 43 H 1.09001 * 109.68539 * 51.52486 * 25 24 23 44 44 H 1.08999 * 109.68381 * 172.03516 * 25 24 23 45 45 H 1.08997 * 109.45826 * 283.43499 * 26 21 20 46 46 H 1.09001 * 109.45243 * 43.36089 * 26 21 20 47 47 H 1.08998 * 109.98555 * 176.19659 * 27 14 13 48 48 H 1.09004 * 109.98809 * 297.55494 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3802 2.1143 -1.3935 5 1 1.5112 2.6160 0.8141 6 1 3.6015 1.4093 0.5793 7 6 2.0103 -1.2021 -0.0005 8 1 1.5371 -2.0990 0.3708 9 7 3.2951 -1.2507 -0.4720 10 6 3.6766 -0.4995 -1.6327 11 6 3.5360 -1.2267 -2.9980 12 6 4.0029 -2.6976 -2.8338 13 8 5.1037 -2.7703 -1.9777 14 6 4.6554 -3.1962 -0.6952 15 1 3.7644 -3.8107 -0.8243 16 6 5.7495 -4.0528 -0.0548 17 7 6.0506 -5.1915 -0.9259 18 6 6.9900 -6.0874 -0.5633 19 8 7.5857 -5.9511 0.4843 20 6 7.2993 -7.2591 -1.4591 21 6 8.3780 -8.1021 -0.8290 22 6 8.0300 -9.1297 -0.1130 23 6 9.0269 -10.0273 0.5635 24 8 10.3308 -9.8124 0.0196 25 6 10.6999 -8.4284 -0.0208 26 6 9.8159 -7.7259 -1.0576 27 6 4.3335 -2.0888 0.2152 28 1 -0.4850 0.8400 -0.0004 29 1 4.7174 -0.1981 -1.5146 30 1 3.0691 0.4049 -1.6661 31 1 4.1561 -0.7280 -3.7429 32 1 2.4937 -1.2079 -3.3162 33 1 4.2789 -3.0983 -3.8091 34 1 3.1864 -3.2899 -2.4205 35 1 5.4060 -4.4168 0.9134 36 1 6.6485 -3.4517 0.0812 37 1 5.5739 -5.3007 -1.7636 38 1 7.6423 -6.8955 -2.4276 39 1 6.4003 -7.8604 -1.5944 40 1 6.9783 -9.3477 0.0007 41 1 9.0408 -9.8113 1.6317 42 1 8.7399 -11.0674 0.4088 43 1 10.5486 -7.9792 0.9607 44 1 11.7470 -8.3359 -0.3091 45 1 10.1157 -8.0298 -2.0605 46 1 9.9291 -6.6465 -0.9568 47 1 3.9346 -2.4799 1.1511 48 1 5.2264 -1.4943 0.4091 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001150276061.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:56:23 Heat of formation + Delta-G solvation = -103.223624 kcal Electronic energy + Delta-G solvation = -28062.481347 eV Core-core repulsion = 24117.892073 eV Total energy + Delta-G solvation = -3944.589273 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.28161 -40.66299 -39.82637 -37.07433 -36.11002 -35.55048 -33.88591 -33.59049 -32.01547 -30.92558 -29.89482 -27.37564 -27.10944 -25.30076 -24.66946 -23.87452 -22.54998 -21.89763 -21.33272 -19.02871 -18.86583 -18.27258 -17.63788 -17.47236 -17.41514 -17.28092 -16.79436 -16.26483 -16.07572 -16.00183 -15.73555 -15.61755 -14.96579 -14.83265 -14.49501 -14.31124 -14.17165 -13.97237 -13.87868 -13.71010 -13.65976 -13.29719 -13.15670 -12.83492 -12.78894 -12.65243 -12.35097 -12.19421 -12.03357 -11.76108 -11.64250 -11.51747 -11.33242 -11.04579 -10.63324 -10.60028 -10.44553 -10.07745 -9.78101 -8.77144 -8.25540 -5.65996 1.09603 1.27837 1.38099 1.49038 1.67788 2.31791 2.38332 2.91553 2.94395 3.01435 3.20298 3.65782 3.77638 3.91272 3.98969 4.03739 4.09340 4.20540 4.26891 4.28348 4.38296 4.41917 4.48272 4.55244 4.56156 4.56839 4.60952 4.66385 4.71272 4.72011 4.78823 4.82501 4.91404 4.97013 5.01241 5.07544 5.10337 5.16400 5.26326 5.42903 5.52428 5.87417 5.91049 6.11900 6.16179 6.29092 6.58489 6.94265 7.27955 7.56324 8.04405 8.93364 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.030506 B = 0.002306 C = 0.002272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.636506 B =12138.364512 C =12321.128515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C -0.010 4.010 3 Si 0.938 3.062 4 H -0.278 1.278 5 H -0.307 1.307 6 H -0.265 1.265 7 C -0.257 4.257 8 H 0.047 0.953 9 N -0.611 5.611 10 C 0.143 3.857 11 C -0.167 4.167 12 C 0.069 3.931 13 O -0.354 6.354 14 C 0.075 3.925 15 H 0.067 0.933 16 C 0.128 3.872 17 N -0.713 5.713 18 C 0.512 3.488 19 O -0.581 6.581 20 C -0.101 4.101 21 C -0.106 4.106 22 C -0.198 4.198 23 C 0.086 3.914 24 O -0.397 6.397 25 C 0.056 3.944 26 C -0.116 4.116 27 C 0.110 3.890 28 H 0.264 0.736 29 H 0.041 0.959 30 H 0.018 0.982 31 H 0.080 0.920 32 H 0.051 0.949 33 H 0.099 0.901 34 H 0.048 0.952 35 H 0.077 0.923 36 H 0.064 0.936 37 H 0.414 0.586 38 H 0.123 0.877 39 H 0.122 0.878 40 H 0.126 0.874 41 H 0.062 0.938 42 H 0.120 0.880 43 H 0.046 0.954 44 H 0.113 0.887 45 H 0.094 0.906 46 H 0.076 0.924 47 H 0.080 0.920 48 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.666 -17.338 -6.445 25.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.208 4.208 3 Si 0.767 3.233 4 H -0.205 1.205 5 H -0.235 1.235 6 H -0.190 1.190 7 C -0.387 4.387 8 H 0.064 0.936 9 N -0.334 5.334 10 C 0.016 3.984 11 C -0.207 4.207 12 C -0.008 4.008 13 O -0.272 6.272 14 C 0.015 3.985 15 H 0.085 0.915 16 C 0.003 3.997 17 N -0.365 5.365 18 C 0.300 3.700 19 O -0.461 6.461 20 C -0.140 4.140 21 C -0.106 4.106 22 C -0.216 4.216 23 C 0.010 3.990 24 O -0.316 6.316 25 C -0.020 4.020 26 C -0.153 4.153 27 C -0.014 4.014 28 H 0.073 0.927 29 H 0.060 0.940 30 H 0.036 0.964 31 H 0.099 0.901 32 H 0.070 0.930 33 H 0.117 0.883 34 H 0.066 0.934 35 H 0.095 0.905 36 H 0.082 0.918 37 H 0.250 0.750 38 H 0.141 0.859 39 H 0.140 0.860 40 H 0.143 0.857 41 H 0.080 0.920 42 H 0.138 0.862 43 H 0.064 0.936 44 H 0.131 0.869 45 H 0.112 0.888 46 H 0.095 0.905 47 H 0.098 0.902 48 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 18.252 -17.231 -5.780 25.758 hybrid contribution -1.083 1.588 0.093 1.925 sum 17.168 -15.643 -5.687 23.912 Atomic orbital electron populations 1.69983 1.07490 1.27512 1.53297 1.26063 0.95531 1.00869 0.98318 0.85931 0.79348 0.80884 0.77157 1.20544 1.23516 1.18993 1.18584 0.88039 0.93099 1.38959 0.93556 1.44201 1.06805 1.55997 1.26439 1.20721 0.97149 0.93262 0.87249 1.23454 1.00642 0.98384 0.98260 1.22460 0.88352 0.95297 0.94718 1.87608 1.30964 1.88511 1.20134 1.21697 0.95865 0.95040 0.85850 0.91462 1.21401 0.97931 0.86817 0.93565 1.45837 1.40360 1.25357 1.24930 1.21107 0.78474 0.83817 0.86643 1.90692 1.51971 1.76811 1.26660 1.20832 0.99931 0.93978 0.99280 1.20620 0.95393 0.95407 0.99191 1.22904 1.01214 0.97966 0.99551 1.21560 0.80893 1.00177 0.96333 1.88071 1.33334 1.25710 1.84496 1.22763 0.99847 0.81280 0.98111 1.21067 0.92117 1.01076 1.01027 1.21201 0.91876 0.92698 0.95618 0.92705 0.94035 0.96433 0.90135 0.93031 0.88266 0.93353 0.90531 0.91769 0.74999 0.85863 0.85953 0.85658 0.91980 0.86241 0.93556 0.86864 0.88753 0.90515 0.90174 0.93102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.98 13.97 21.65 0.30 -56.68 16 2 C -0.01 -0.57 5.27 84.86 0.45 -0.13 16 3 Si 0.94 45.93 25.24 68.60 1.73 47.66 16 4 H -0.28 -13.15 6.73 99.48 0.67 -12.48 16 5 H -0.31 -15.19 7.11 99.48 0.71 -14.48 16 6 H -0.27 -12.66 7.11 99.48 0.71 -11.95 16 7 C -0.26 -13.89 9.94 84.03 0.84 -13.06 16 8 H 0.05 2.74 8.06 -2.91 -0.02 2.71 16 9 N -0.61 -27.31 2.16 -706.05 -1.52 -28.83 16 10 C 0.14 5.94 4.29 87.75 0.38 6.32 16 11 C -0.17 -5.63 6.75 32.15 0.22 -5.42 16 12 C 0.07 1.94 6.38 72.74 0.46 2.40 16 13 O -0.35 -10.18 9.44 -137.18 -1.30 -11.47 16 14 C 0.08 2.18 2.13 28.71 0.06 2.24 16 15 H 0.07 2.02 6.77 -2.39 -0.02 2.00 16 16 C 0.13 3.26 5.25 86.38 0.45 3.71 16 17 N -0.71 -14.78 5.41 -463.08 -2.51 -17.29 16 18 C 0.51 11.37 7.82 87.66 0.69 12.05 16 19 O -0.58 -17.94 16.03 -3.02 -0.05 -17.99 16 20 C -0.10 -1.45 5.77 29.10 0.17 -1.29 16 21 C -0.11 -1.87 4.40 -15.54 -0.07 -1.93 16 22 C -0.20 -3.39 9.54 26.54 0.25 -3.13 16 23 C 0.09 1.41 7.04 71.09 0.50 1.91 16 24 O -0.40 -7.82 10.84 -148.98 -1.62 -9.44 16 25 C 0.06 0.97 6.90 72.08 0.50 1.47 16 26 C -0.12 -1.94 6.10 29.84 0.18 -1.75 16 27 C 0.11 3.96 5.58 83.79 0.47 4.43 16 28 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 29 H 0.04 1.63 7.98 -2.39 -0.02 1.61 16 30 H 0.02 0.82 3.45 -2.39 -0.01 0.81 16 31 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 32 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 33 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 34 H 0.05 1.46 6.66 -2.39 -0.02 1.45 16 35 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 36 H 0.06 1.77 8.14 -2.39 -0.02 1.76 16 37 H 0.41 6.67 8.26 -92.70 -0.77 5.90 16 38 H 0.12 1.24 8.13 -2.39 -0.02 1.22 16 39 H 0.12 1.21 7.87 -2.39 -0.02 1.20 16 40 H 0.13 1.80 7.83 -2.91 -0.02 1.78 16 41 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 42 H 0.12 1.42 8.14 -2.39 -0.02 1.40 16 43 H 0.05 0.89 8.10 -2.39 -0.02 0.87 16 44 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 45 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 46 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 47 H 0.08 2.87 8.00 -2.39 -0.02 2.85 16 48 H 0.05 1.77 8.14 -2.38 -0.02 1.75 16 Total: -1.00 -70.80 376.17 0.74 -70.06 By element: Atomic # 1 Polarization: 16.00 SS G_CDS: 0.15 Total: 16.15 kcal Atomic # 6 Polarization: 2.29 SS G_CDS: 5.54 Total: 7.83 kcal Atomic # 7 Polarization: -99.07 SS G_CDS: -3.73 Total: -102.80 kcal Atomic # 8 Polarization: -35.94 SS G_CDS: -2.96 Total: -38.90 kcal Atomic # 14 Polarization: 45.93 SS G_CDS: 1.73 Total: 47.66 kcal Total: -70.80 0.74 -70.06 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001150276061.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.163 kcal (2) G-P(sol) polarization free energy of solvation -70.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds