Wall clock time and date at job start Tue Mar 31 2020 14:49:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.50801 * 2 1 4 4 O 1.43367 * 109.62784 * 120.31655 * 2 1 3 5 5 C 1.44196 * 107.28820 * 119.21157 * 4 2 1 6 6 C 1.54906 * 103.23216 * 338.47344 * 5 4 2 7 7 H 1.09005 * 110.97973 * 277.54437 * 6 5 4 8 8 C 1.50694 * 110.98184 * 153.75708 * 6 5 4 9 9 C 1.33002 * 119.99949 * 119.99941 * 8 6 5 10 10 C 1.47104 * 119.99706 * 180.02562 * 9 8 6 11 11 O 1.21613 * 120.00160 * 354.59968 * 10 9 8 12 12 N 1.34778 * 119.99891 * 174.59362 * 10 9 8 13 13 C 1.47079 * 120.88145 * 184.72017 * 12 10 9 14 14 C 1.53693 * 108.27739 * 128.76082 * 13 12 10 15 15 N 1.46894 * 109.25800 * 54.07972 * 14 13 12 16 16 C 1.46906 * 111.00033 * 172.61208 * 15 14 13 17 17 C 1.50698 * 109.47019 * 59.68901 * 16 15 14 18 18 H 1.07997 * 120.00174 * 355.24904 * 17 16 15 19 19 C 1.37877 * 119.99602 * 175.25468 * 17 16 15 20 20 N 1.31517 * 119.99814 * 179.97438 * 19 17 16 21 21 Si 1.86797 * 120.00396 * 359.97438 * 19 17 16 22 22 H 1.48505 * 109.47465 * 89.99696 * 21 19 17 23 23 H 1.48503 * 109.47296 * 210.00081 * 21 19 17 24 24 H 1.48498 * 109.46909 * 330.00004 * 21 19 17 25 25 C 1.46907 * 111.27026 * 296.75932 * 15 14 13 26 26 C 1.47082 * 120.87987 * 5.00182 * 12 10 9 27 27 O 1.43752 * 109.62829 * 239.67643 * 2 1 3 28 28 H 1.09005 * 109.46679 * 301.13803 * 1 2 3 29 29 H 1.08994 * 109.47209 * 61.13574 * 1 2 3 30 30 H 1.08999 * 109.47433 * 181.14100 * 1 2 3 31 31 H 1.09002 * 109.46594 * 178.86883 * 3 2 1 32 32 H 1.09004 * 109.46759 * 298.85800 * 3 2 1 33 33 H 1.08993 * 109.47170 * 58.86279 * 3 2 1 34 34 H 1.08996 * 110.69911 * 96.95722 * 5 4 2 35 35 H 1.08997 * 110.69423 * 219.99054 * 5 4 2 36 36 H 1.08000 * 120.00151 * 300.00359 * 8 6 5 37 37 H 1.07992 * 120.00098 * 359.97438 * 9 8 6 38 38 H 1.09002 * 109.62315 * 248.52736 * 13 12 10 39 39 H 1.08993 * 109.63074 * 9.10167 * 13 12 10 40 40 H 1.09008 * 109.64229 * 294.07682 * 14 13 12 41 41 H 1.08998 * 109.42258 * 173.94736 * 14 13 12 42 42 H 1.08996 * 109.46950 * 179.68643 * 16 15 14 43 43 H 1.09002 * 109.46892 * 299.68879 * 16 15 14 44 44 H 0.97001 * 120.00410 * 179.97438 * 20 19 17 45 45 H 1.09007 * 109.48869 * 303.14363 * 25 15 14 46 46 H 1.09002 * 109.49376 * 183.06608 * 25 15 14 47 47 H 1.09009 * 109.62654 * 350.89089 * 26 12 10 48 48 H 1.08995 * 109.62861 * 111.27788 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0410 1.4422 0.0000 4 8 2.0116 -0.6816 1.1657 5 6 2.7885 -1.8088 0.7127 6 6 2.2663 -2.0438 -0.7267 7 1 1.3468 -2.6291 -0.7176 8 6 3.3166 -2.7064 -1.5802 9 6 3.0736 -3.8912 -2.1336 10 6 4.0991 -4.5382 -2.9664 11 8 5.1296 -3.9485 -3.2298 12 7 3.8968 -5.7847 -3.4373 13 6 4.9496 -6.4896 -4.1844 14 6 5.1446 -7.8761 -3.5505 15 7 3.8512 -8.5703 -3.4965 16 6 4.0190 -9.9629 -3.0600 17 6 4.6455 -9.9878 -1.6896 18 1 4.9644 -9.0666 -1.2248 19 6 4.8115 -11.1867 -1.0292 20 7 5.3587 -11.2084 0.1666 21 14 4.2593 -12.7800 -1.8327 22 1 5.3782 -13.3474 -2.6274 23 1 3.8559 -13.7499 -0.7831 24 1 3.1048 -12.5093 -2.7266 25 6 2.9001 -7.8587 -2.6321 26 6 2.6153 -6.4739 -3.2231 27 8 2.0129 -0.6836 -1.1687 28 1 -0.3633 0.5314 0.8797 29 1 -0.3633 0.4961 -0.8999 30 1 -0.3634 -1.0274 0.0205 31 1 3.1308 1.4414 0.0203 32 1 1.6947 1.9502 -0.9001 33 1 1.6614 1.9621 0.8795 34 1 3.8508 -1.5652 0.7021 35 1 2.6011 -2.6819 1.3377 36 1 4.2668 -2.2193 -1.7426 37 1 2.1237 -4.3785 -1.9710 38 1 4.6484 -6.5990 -5.2263 39 1 5.8801 -5.9250 -4.1268 40 1 5.5403 -7.7650 -2.5409 41 1 5.8434 -8.4554 -4.1539 42 1 3.0456 -10.4520 -3.0234 43 1 4.6638 -10.4891 -3.7639 44 1 5.4752 -12.0518 0.6314 45 1 3.3271 -7.7480 -1.6353 46 1 1.9711 -8.4255 -2.5694 47 1 2.0018 -5.8988 -2.5294 48 1 2.0926 -6.5788 -4.1738 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001152068358.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:55 Heat of formation + Delta-G solvation = -111.876654 kcal Electronic energy + Delta-G solvation = -27770.862325 eV Core-core repulsion = 23825.897828 eV Total energy + Delta-G solvation = -3944.964497 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.71581 -41.21278 -39.12959 -36.37032 -36.05835 -35.41815 -34.35038 -33.25365 -32.06767 -30.50295 -29.28071 -28.36588 -27.33906 -25.53103 -24.46953 -23.79666 -22.50785 -22.16757 -21.14969 -19.97286 -19.02712 -18.63515 -18.21877 -17.35013 -16.95791 -16.61859 -16.36470 -16.32845 -16.04885 -15.80478 -15.74600 -15.09335 -15.03407 -14.81786 -14.54375 -14.44184 -13.98890 -13.88355 -13.83128 -13.65144 -13.27588 -13.14270 -13.07326 -13.03175 -12.91417 -12.70030 -12.52604 -12.45192 -12.24939 -12.13167 -12.00918 -11.73347 -11.64553 -11.36847 -10.97512 -10.80006 -10.73591 -10.70319 -9.77105 -9.03789 -8.32165 -6.38429 0.07976 1.37764 1.38402 1.49892 1.88432 2.06352 2.33721 2.40649 2.89106 3.03090 3.23411 3.28066 3.52950 3.69667 3.76313 3.90233 3.93891 4.04254 4.05836 4.09682 4.23643 4.32729 4.35247 4.52974 4.55480 4.59385 4.66910 4.67340 4.71409 4.76317 4.78126 4.85328 4.90334 4.98150 5.05096 5.07775 5.12545 5.14486 5.19427 5.21885 5.23192 5.45365 5.48125 6.02336 6.03372 6.25956 6.32903 6.39598 6.68860 7.03206 7.29053 8.84159 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.018780 B = 0.002411 C = 0.002273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1490.597377 B =11609.009767 C =12315.203300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.237 3.763 3 C -0.155 4.155 4 O -0.390 6.390 5 C 0.026 3.974 6 C 0.078 3.922 7 H 0.119 0.881 8 C -0.063 4.063 9 C -0.182 4.182 10 C 0.538 3.462 11 O -0.590 6.590 12 N -0.605 5.605 13 C 0.125 3.875 14 C 0.054 3.946 15 N -0.525 5.525 16 C 0.158 3.842 17 C -0.550 4.550 18 H 0.029 0.971 19 C 0.009 3.991 20 N -0.950 5.950 21 Si 0.952 3.048 22 H -0.270 1.270 23 H -0.287 1.287 24 H -0.238 1.238 25 C 0.044 3.956 26 C 0.115 3.885 27 O -0.380 6.380 28 H 0.084 0.916 29 H 0.085 0.915 30 H 0.065 0.935 31 H 0.057 0.943 32 H 0.084 0.916 33 H 0.089 0.911 34 H 0.077 0.923 35 H 0.122 0.878 36 H 0.118 0.882 37 H 0.168 0.832 38 H 0.092 0.908 39 H 0.079 0.921 40 H 0.007 0.993 41 H 0.081 0.919 42 H 0.042 0.958 43 H 0.030 0.970 44 H 0.265 0.735 45 H 0.012 0.988 46 H 0.094 0.906 47 H 0.117 0.883 48 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.074 19.874 -3.718 24.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.161 3.839 3 C -0.213 4.213 4 O -0.312 6.312 5 C -0.050 4.050 6 C 0.021 3.979 7 H 0.136 0.864 8 C -0.083 4.083 9 C -0.202 4.202 10 C 0.329 3.671 11 O -0.473 6.473 12 N -0.336 5.336 13 C 0.002 3.998 14 C -0.075 4.075 15 N -0.248 5.248 16 C 0.031 3.969 17 C -0.589 4.589 18 H 0.048 0.952 19 C -0.189 4.189 20 N -0.590 5.590 21 Si 0.775 3.225 22 H -0.195 1.195 23 H -0.213 1.213 24 H -0.161 1.161 25 C -0.085 4.085 26 C -0.007 4.007 27 O -0.302 6.302 28 H 0.103 0.897 29 H 0.104 0.896 30 H 0.084 0.916 31 H 0.076 0.924 32 H 0.103 0.897 33 H 0.108 0.892 34 H 0.095 0.905 35 H 0.140 0.860 36 H 0.136 0.864 37 H 0.185 0.815 38 H 0.111 0.889 39 H 0.098 0.902 40 H 0.025 0.975 41 H 0.099 0.901 42 H 0.060 0.940 43 H 0.048 0.952 44 H 0.074 0.926 45 H 0.031 0.969 46 H 0.112 0.888 47 H 0.135 0.865 48 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -12.718 20.205 -4.218 24.244 hybrid contribution 1.007 -1.186 1.145 1.932 sum -11.711 19.019 -3.073 22.545 Atomic orbital electron populations 1.22380 0.92061 1.03843 1.04286 1.23746 0.94299 0.91811 0.74066 1.22120 1.02032 0.92796 1.04306 1.88891 1.69832 1.42328 1.30151 1.24270 0.96717 0.90204 0.93829 1.23083 0.97796 0.84657 0.92321 0.86352 1.23204 0.98489 0.93945 0.92642 1.22819 1.00483 0.97470 0.99464 1.19000 0.87010 0.81213 0.79850 1.90747 1.30607 1.64657 1.61266 1.48205 1.16593 1.14619 1.54173 1.21779 0.91468 0.90603 0.95935 1.22315 0.92355 0.94397 0.98481 1.62456 1.09600 1.02745 1.49997 1.20115 0.96822 0.87465 0.92501 1.21899 1.40538 0.93563 1.02864 0.95236 1.25972 0.94474 1.03405 0.95046 1.70093 1.45829 1.27877 1.15221 0.85648 0.80186 0.78149 0.78539 1.19533 1.21324 1.16102 1.22388 0.97197 0.94916 0.94007 1.22208 0.83923 0.91320 1.03235 1.89378 1.86260 1.21708 1.32819 0.89705 0.89631 0.91605 0.92373 0.89676 0.89181 0.90468 0.85961 0.86404 0.81508 0.88942 0.90239 0.97459 0.90053 0.94016 0.95155 0.92571 0.96924 0.88810 0.86469 0.88327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.13 9.19 71.98 0.66 -1.47 16 2 C 0.24 4.07 1.47 30.60 0.05 4.11 16 3 C -0.16 -2.22 9.24 71.98 0.66 -1.56 16 4 O -0.39 -7.62 10.87 -126.22 -1.37 -8.99 16 5 C 0.03 0.45 7.52 72.63 0.55 0.99 16 6 C 0.08 1.35 3.86 30.50 0.12 1.47 16 7 H 0.12 1.51 7.90 -2.38 -0.02 1.49 16 8 C -0.06 -1.33 8.85 24.52 0.22 -1.11 16 9 C -0.18 -3.93 8.97 23.43 0.21 -3.72 16 10 C 0.54 16.30 7.64 86.57 0.66 16.96 16 11 O -0.59 -22.32 15.71 -4.07 -0.06 -22.39 16 12 N -0.60 -17.60 3.00 -821.33 -2.47 -20.06 16 13 C 0.13 3.89 6.61 86.50 0.57 4.46 16 14 C 0.05 2.02 5.17 86.54 0.45 2.47 16 15 N -0.52 -19.64 4.83 -898.86 -4.34 -23.98 16 16 C 0.16 7.00 4.20 85.56 0.36 7.36 16 17 C -0.55 -30.02 8.32 25.60 0.21 -29.80 16 18 H 0.03 1.84 6.12 -2.91 -0.02 1.82 16 19 C 0.01 0.50 5.47 84.65 0.46 0.96 16 20 N -0.95 -58.32 13.96 21.45 0.30 -58.02 16 21 Si 0.95 42.16 27.57 68.60 1.89 44.05 16 22 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 23 H -0.29 -12.68 7.11 99.48 0.71 -11.97 16 24 H -0.24 -9.50 6.41 99.48 0.64 -8.86 16 25 C 0.04 1.44 5.24 86.38 0.45 1.89 16 26 C 0.11 2.69 6.51 86.35 0.56 3.25 16 27 O -0.38 -7.72 10.74 -126.22 -1.36 -9.08 16 28 H 0.08 0.90 8.14 -2.38 -0.02 0.88 16 29 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.08 1.03 8.14 -2.39 -0.02 1.02 16 33 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.08 1.37 8.03 -2.39 -0.02 1.35 16 35 H 0.12 1.68 8.14 -2.39 -0.02 1.66 16 36 H 0.12 2.97 7.50 -2.91 -0.02 2.95 16 37 H 0.17 2.37 5.76 -2.91 -0.02 2.35 16 38 H 0.09 2.50 8.14 -2.39 -0.02 2.48 16 39 H 0.08 2.63 7.09 -2.39 -0.02 2.62 16 40 H 0.01 0.33 6.63 -2.38 -0.02 0.31 16 41 H 0.08 2.96 8.11 -2.39 -0.02 2.94 16 42 H 0.04 1.79 6.79 -2.39 -0.02 1.77 16 43 H 0.03 1.33 7.81 -2.39 -0.02 1.31 16 44 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 45 H 0.01 0.50 7.09 -2.38 -0.02 0.49 16 46 H 0.09 2.79 8.06 -2.39 -0.02 2.77 16 47 H 0.12 1.92 5.37 -2.38 -0.01 1.91 16 48 H 0.10 1.93 8.14 -2.39 -0.02 1.92 16 Total: -1.00 -73.54 379.41 -0.34 -73.87 By element: Atomic # 1 Polarization: 17.46 SS G_CDS: 0.88 Total: 18.33 kcal Atomic # 6 Polarization: 0.06 SS G_CDS: 6.19 Total: 6.26 kcal Atomic # 7 Polarization: -95.56 SS G_CDS: -6.51 Total: -102.06 kcal Atomic # 8 Polarization: -37.66 SS G_CDS: -2.79 Total: -40.45 kcal Atomic # 14 Polarization: 42.16 SS G_CDS: 1.89 Total: 44.05 kcal Total: -73.54 -0.34 -73.87 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001152068358.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.005 kcal (2) G-P(sol) polarization free energy of solvation -73.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds