Wall clock time and date at job start Tue Mar 31 2020 14:02:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31610 * 1 3 3 Si 1.86805 * 119.99967 * 2 1 4 4 H 1.48494 * 109.47240 * 270.00180 * 3 2 1 5 5 H 1.48503 * 109.46800 * 30.00112 * 3 2 1 6 6 H 1.48496 * 109.47185 * 149.99932 * 3 2 1 7 7 C 1.38814 * 120.00148 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99859 * 164.51802 * 7 2 1 9 9 N 1.36932 * 120.00220 * 344.52414 * 7 2 1 10 10 C 1.47005 * 121.37338 * 335.96282 * 9 7 2 11 11 C 1.50323 * 109.16785 * 222.97545 * 10 9 7 12 12 C 1.29454 * 123.65162 * 349.01910 * 11 10 9 13 13 C 1.50695 * 117.69382 * 180.86063 * 12 11 10 14 14 C 1.53001 * 109.47087 * 95.00155 * 13 12 11 15 15 N 1.46506 * 109.47305 * 179.97438 * 14 13 12 16 16 C 1.34775 * 120.00004 * 180.02562 * 15 14 13 17 17 O 1.21287 * 120.00035 * 0.02562 * 16 15 14 18 18 C 1.50695 * 119.99786 * 180.02562 * 16 15 14 19 19 C 1.53001 * 109.47087 * 179.97438 * 18 16 15 20 20 O 1.42967 * 109.47233 * 174.99716 * 19 18 16 21 21 C 1.43090 * 113.77200 * 178.79424 * 20 19 18 22 22 C 1.53260 * 108.94428 * 302.03279 * 21 20 19 23 23 C 1.53256 * 108.84282 * 54.52233 * 22 21 20 24 24 O 1.42962 * 109.47355 * 294.99709 * 19 18 16 25 25 C 1.49968 * 124.60839 * 1.14311 * 12 11 10 26 26 C 1.47338 * 121.37879 * 155.99368 * 9 7 2 27 27 H 0.96996 * 120.00378 * 359.97438 * 1 2 3 28 28 H 1.08996 * 109.52198 * 103.06374 * 10 9 7 29 29 H 1.09003 * 109.52621 * 342.88045 * 10 9 7 30 30 H 1.08001 * 118.17248 * 169.00468 * 11 10 9 31 31 H 1.09000 * 109.47434 * 335.00093 * 13 12 11 32 32 H 1.09004 * 109.47237 * 214.99989 * 13 12 11 33 33 H 1.09000 * 109.47034 * 59.99693 * 14 13 12 34 34 H 1.08991 * 109.47235 * 299.99892 * 14 13 12 35 35 H 0.97005 * 119.99613 * 0.02562 * 15 14 13 36 36 H 1.09000 * 109.47434 * 59.99834 * 18 16 15 37 37 H 1.09004 * 109.47237 * 299.99730 * 18 16 15 38 38 H 1.09002 * 109.47421 * 55.00007 * 19 18 16 39 39 H 1.09006 * 109.55740 * 61.86823 * 21 20 19 40 40 H 1.08999 * 109.56041 * 182.08381 * 21 20 19 41 41 H 1.08997 * 109.57663 * 174.33404 * 22 21 20 42 42 H 1.09004 * 109.57345 * 294.58892 * 22 21 20 43 43 H 1.08992 * 109.56229 * 65.31695 * 23 22 21 44 44 H 1.09006 * 109.56077 * 185.64309 * 23 22 21 45 45 H 1.09002 * 109.31621 * 101.01258 * 25 12 11 46 46 H 1.09004 * 109.31579 * 220.43759 * 25 12 11 47 47 H 1.08997 * 109.77510 * 237.78538 * 26 9 7 48 48 H 1.09001 * 109.77767 * 358.59217 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4475 2.6527 0.7001 6 1 3.5476 1.4402 0.7000 7 6 2.0102 -1.2021 0.0005 8 1 3.0609 -1.2192 -0.2491 9 7 1.3628 -2.3664 0.3175 10 6 0.1444 -2.3652 1.1400 11 6 0.2247 -3.4822 2.1427 12 6 1.1204 -4.4161 2.1060 13 6 1.0639 -5.4828 3.1690 14 6 0.2872 -6.6899 2.6395 15 7 0.2328 -7.7272 3.6726 16 6 -0.4050 -8.8891 3.4281 17 8 -0.9335 -9.0761 2.3526 18 6 -0.4614 -9.9558 4.4911 19 6 -1.2381 -11.1629 3.9615 20 8 -1.1924 -12.2188 4.9243 21 6 -1.9167 -13.3888 4.5320 22 6 -3.3781 -13.0061 4.2740 23 6 -3.4178 -11.8626 3.2545 24 8 -2.5982 -10.7895 3.7280 25 6 2.2139 -4.5079 1.0838 26 6 1.8590 -3.6722 -0.1512 27 1 -0.4850 0.8400 0.0004 28 1 -0.7265 -2.5111 0.5010 29 1 0.0585 -1.4123 1.6624 30 1 -0.5055 -3.5069 2.9381 31 1 0.5636 -5.0884 4.0534 32 1 2.0768 -5.7889 3.4308 33 1 0.7875 -7.0844 1.7550 34 1 -0.7256 -6.3839 2.3777 35 1 0.6558 -7.5777 4.5327 36 1 -0.9622 -9.5615 5.3753 37 1 0.5515 -10.2615 4.7532 38 1 -0.7893 -11.5028 3.0281 39 1 -1.4808 -13.7995 3.6212 40 1 -1.8675 -14.1323 5.3276 41 1 -3.9167 -13.8672 3.8782 42 1 -3.8411 -12.6828 5.2064 43 1 -3.0388 -12.2154 2.2954 44 1 -4.4438 -11.5136 3.1371 45 1 3.1442 -4.1407 1.5171 46 1 2.3438 -5.5488 0.7873 47 1 1.0847 -4.1744 -0.7311 48 1 2.7476 -3.5299 -0.7662 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001159928741.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:02:18 Heat of formation + Delta-G solvation = -122.510998 kcal Electronic energy + Delta-G solvation = -27125.673577 eV Core-core repulsion = 23180.247941 eV Total energy + Delta-G solvation = -3945.425637 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 1.69 seconds Orbital eigenvalues (eV) -41.28125 -40.33945 -39.42890 -36.78594 -36.64037 -35.09137 -34.21840 -33.17002 -31.63953 -31.32534 -29.87029 -27.15255 -26.93586 -25.15396 -24.43404 -23.69747 -22.45324 -22.14780 -21.41704 -19.46061 -18.77119 -17.91100 -17.67448 -17.52146 -17.03217 -16.91839 -16.71070 -16.37640 -15.88663 -15.73594 -15.63554 -15.45868 -15.18418 -14.98634 -14.47018 -14.31039 -14.29813 -13.98225 -13.78719 -13.38359 -13.25550 -13.04384 -12.81497 -12.77261 -12.56940 -12.43369 -12.35002 -12.18118 -12.12082 -12.08896 -11.87848 -11.66873 -11.25979 -11.02622 -10.91253 -10.68909 -10.68125 -10.08802 -9.48004 -8.75087 -7.87958 -5.30177 1.41762 1.46547 1.47792 1.57815 1.63834 1.99400 2.51153 2.64874 2.79766 3.28825 3.65350 3.68832 3.77670 3.78040 3.84982 3.97484 4.04850 4.14895 4.18583 4.26305 4.31688 4.40016 4.43156 4.52396 4.56252 4.60271 4.69989 4.71626 4.82155 4.84500 4.87323 4.92314 4.99349 5.09938 5.11260 5.18711 5.24378 5.41623 5.44979 5.50568 5.60810 5.82705 5.89027 6.14207 6.29220 6.33656 6.56840 7.13056 7.27197 7.83287 8.38410 9.20725 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.038535 B = 0.001826 C = 0.001798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.433651 B =15329.209559 C =15567.991645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C -0.058 4.058 3 Si 0.972 3.028 4 H -0.285 1.285 5 H -0.293 1.293 6 H -0.269 1.269 7 C -0.258 4.258 8 H 0.072 0.928 9 N -0.615 5.615 10 C 0.206 3.794 11 C -0.176 4.176 12 C -0.120 4.120 13 C -0.078 4.078 14 C 0.133 3.867 15 N -0.714 5.714 16 C 0.514 3.486 17 O -0.579 6.579 18 C -0.120 4.120 19 C 0.260 3.740 20 O -0.405 6.405 21 C 0.049 3.951 22 C -0.186 4.186 23 C 0.046 3.954 24 O -0.407 6.407 25 C -0.087 4.087 26 C 0.134 3.866 27 H 0.249 0.751 28 H 0.001 0.999 29 H 0.055 0.945 30 H 0.112 0.888 31 H 0.083 0.917 32 H 0.096 0.904 33 H 0.059 0.941 34 H 0.045 0.955 35 H 0.419 0.581 36 H 0.125 0.875 37 H 0.148 0.852 38 H 0.053 0.947 39 H 0.062 0.938 40 H 0.122 0.878 41 H 0.110 0.890 42 H 0.077 0.923 43 H 0.054 0.946 44 H 0.104 0.896 45 H 0.070 0.930 46 H 0.086 0.914 47 H 0.017 0.983 48 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.981 -28.108 14.164 31.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.253 4.253 3 Si 0.800 3.200 4 H -0.211 1.211 5 H -0.219 1.219 6 H -0.194 1.194 7 C -0.388 4.388 8 H 0.089 0.911 9 N -0.339 5.339 10 C 0.081 3.919 11 C -0.195 4.195 12 C -0.121 4.121 13 C -0.116 4.116 14 C 0.009 3.991 15 N -0.368 5.368 16 C 0.301 3.699 17 O -0.458 6.458 18 C -0.160 4.160 19 C 0.165 3.835 20 O -0.326 6.326 21 C -0.027 4.027 22 C -0.223 4.223 23 C -0.030 4.030 24 O -0.328 6.328 25 C -0.125 4.125 26 C 0.009 3.991 27 H 0.058 0.942 28 H 0.019 0.981 29 H 0.073 0.927 30 H 0.130 0.870 31 H 0.102 0.898 32 H 0.114 0.886 33 H 0.077 0.923 34 H 0.063 0.937 35 H 0.257 0.743 36 H 0.143 0.857 37 H 0.166 0.834 38 H 0.071 0.929 39 H 0.080 0.920 40 H 0.139 0.861 41 H 0.128 0.872 42 H 0.096 0.904 43 H 0.072 0.928 44 H 0.122 0.878 45 H 0.088 0.912 46 H 0.104 0.896 47 H 0.035 0.965 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -1.398 -27.892 13.594 31.060 hybrid contribution -0.110 1.136 -0.445 1.225 sum -1.508 -26.756 13.148 29.850 Atomic orbital electron populations 1.70197 1.06696 1.25795 1.56212 1.25818 0.96192 1.01582 1.01678 0.85204 0.77976 0.79282 0.77561 1.21142 1.21913 1.19380 1.19543 0.92583 0.85597 1.41037 0.91050 1.44425 1.29428 1.02099 1.57963 1.19348 0.87259 0.95292 0.89984 1.22822 0.99510 0.97254 0.99934 1.20603 0.97089 0.96237 0.98188 1.20804 1.01865 0.92319 0.96567 1.21141 0.99735 0.87247 0.90930 1.45838 1.56510 1.15501 1.18911 1.20713 0.77233 0.83495 0.88412 1.90737 1.46762 1.80526 1.27815 1.21484 1.04270 0.91777 0.98429 1.22882 0.83062 0.87272 0.90313 1.88018 1.73045 1.25191 1.46368 1.22927 0.90477 0.86889 1.02398 1.22765 0.98451 1.00201 1.00910 1.22841 0.96165 0.87799 0.96205 1.88141 1.21877 1.36914 1.85906 1.20748 0.96794 1.00033 0.94945 1.21198 0.97022 0.86067 0.94805 0.94157 0.98144 0.92676 0.86992 0.89838 0.88599 0.92273 0.93701 0.74319 0.85729 0.83424 0.92927 0.91977 0.86054 0.87191 0.90399 0.92792 0.87802 0.91157 0.89580 0.96538 0.92211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.39 11.08 21.65 0.24 -57.15 16 2 C -0.06 -3.34 5.01 84.86 0.43 -2.91 16 3 Si 0.97 45.75 29.58 68.60 2.03 47.78 16 4 H -0.28 -13.16 7.11 99.48 0.71 -12.46 16 5 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 6 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 7 C -0.26 -14.57 9.71 84.03 0.82 -13.75 16 8 H 0.07 3.88 7.88 -2.91 -0.02 3.86 16 9 N -0.62 -32.22 3.01 -703.04 -2.11 -34.33 16 10 C 0.21 10.54 5.23 85.42 0.45 10.99 16 11 C -0.18 -6.88 9.47 27.11 0.26 -6.62 16 12 C -0.12 -3.93 5.11 -15.14 -0.08 -4.00 16 13 C -0.08 -1.73 5.32 29.85 0.16 -1.57 16 14 C 0.13 3.16 5.66 86.38 0.49 3.65 16 15 N -0.71 -12.84 5.56 -463.06 -2.57 -15.41 16 16 C 0.51 11.48 7.71 87.66 0.68 12.16 16 17 O -0.58 -18.87 15.42 10.71 0.17 -18.71 16 18 C -0.12 -1.83 5.78 29.85 0.17 -1.65 16 19 C 0.26 5.13 2.80 71.98 0.20 5.33 16 20 O -0.41 -6.99 10.54 -126.22 -1.33 -8.32 16 21 C 0.05 0.56 6.96 72.07 0.50 1.06 16 22 C -0.19 -2.06 6.35 30.77 0.20 -1.86 16 23 C 0.05 0.78 6.96 72.07 0.50 1.28 16 24 O -0.41 -9.73 9.77 -120.76 -1.18 -10.91 16 25 C -0.09 -2.88 5.95 29.71 0.18 -2.70 16 26 C 0.13 5.73 6.59 86.32 0.57 6.30 16 27 H 0.25 14.68 8.31 -92.71 -0.77 13.90 16 28 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 29 H 0.06 3.14 6.41 -2.39 -0.02 3.13 16 30 H 0.11 3.84 7.73 -2.91 -0.02 3.82 16 31 H 0.08 1.66 7.78 -2.39 -0.02 1.64 16 32 H 0.10 1.68 8.11 -2.39 -0.02 1.66 16 33 H 0.06 1.54 8.11 -2.39 -0.02 1.52 16 34 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.42 4.27 8.47 -92.70 -0.79 3.49 16 36 H 0.12 1.56 8.14 -2.39 -0.02 1.54 16 37 H 0.15 1.25 8.14 -2.39 -0.02 1.24 16 38 H 0.05 1.13 7.95 -2.39 -0.02 1.11 16 39 H 0.06 0.62 8.14 -2.38 -0.02 0.60 16 40 H 0.12 0.85 8.14 -2.39 -0.02 0.83 16 41 H 0.11 0.65 8.14 -2.39 -0.02 0.63 16 42 H 0.08 0.94 8.14 -2.38 -0.02 0.92 16 43 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 44 H 0.10 1.55 8.14 -2.38 -0.02 1.53 16 45 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 46 H 0.09 2.34 8.10 -2.38 -0.02 2.32 16 47 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 48 H 0.06 2.45 7.96 -2.39 -0.02 2.43 16 Total: -1.00 -77.80 385.40 0.90 -76.90 By element: Atomic # 1 Polarization: 14.31 SS G_CDS: 0.16 Total: 14.46 kcal Atomic # 6 Polarization: 0.19 SS G_CDS: 5.51 Total: 5.69 kcal Atomic # 7 Polarization: -102.45 SS G_CDS: -4.45 Total: -106.90 kcal Atomic # 8 Polarization: -35.59 SS G_CDS: -2.35 Total: -37.93 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 2.03 Total: 47.78 kcal Total: -77.80 0.90 -76.90 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001159928741.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.610 kcal (2) G-P(sol) polarization free energy of solvation -77.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.69 seconds