Wall clock time and date at job start Tue Mar 31 2020 13:49:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86803 * 119.99856 * 2 1 4 4 H 1.48503 * 109.47131 * 274.13562 * 3 2 1 5 5 H 1.48501 * 109.46900 * 34.13187 * 3 2 1 6 6 H 1.48493 * 109.47189 * 154.13160 * 3 2 1 7 7 C 1.38807 * 120.00029 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00234 * 354.17744 * 7 2 1 9 9 N 1.36939 * 119.99939 * 173.90418 * 7 2 1 10 10 C 1.46494 * 119.99892 * 184.79124 * 9 7 2 11 11 C 1.53002 * 109.46768 * 175.04191 * 10 9 7 12 12 C 1.53004 * 115.55343 * 279.61465 * 11 10 9 13 13 C 1.52999 * 109.47273 * 294.51793 * 12 11 10 14 14 N 1.46505 * 109.47009 * 184.89527 * 13 12 11 15 15 C 1.34776 * 119.99848 * 184.89163 * 14 13 12 16 16 O 1.21609 * 119.99818 * 5.14198 * 15 14 13 17 17 C 1.47425 * 119.99752 * 185.14834 * 15 14 13 18 18 C 1.41291 * 126.41521 * 359.68008 * 17 15 14 19 19 N 1.30455 * 108.01992 * 179.85791 * 18 17 15 20 20 N 1.39932 * 108.89512 * 0.40973 * 19 18 17 21 21 C 1.46501 * 125.75131 * 179.73259 * 20 19 18 22 22 C 1.52995 * 109.47429 * 305.00408 * 21 20 19 23 23 F 1.39899 * 109.47572 * 179.97438 * 22 21 20 24 24 C 1.34256 * 108.49780 * 359.73697 * 20 19 18 25 25 C 1.53003 * 117.49673 * 133.91361 * 11 10 9 26 26 C 1.53002 * 117.50098 * 65.28941 * 11 10 9 27 27 H 0.97002 * 120.00063 * 0.02562 * 1 2 3 28 28 H 0.96999 * 119.99705 * 4.79662 * 9 7 2 29 29 H 1.08994 * 109.47615 * 295.04411 * 10 9 7 30 30 H 1.08999 * 109.47131 * 55.04603 * 10 9 7 31 31 H 1.09006 * 109.46735 * 54.51323 * 12 11 10 32 32 H 1.08991 * 109.47475 * 174.50961 * 12 11 10 33 33 H 1.08996 * 109.47154 * 304.89463 * 13 12 11 34 34 H 1.08997 * 109.47070 * 64.89440 * 13 12 11 35 35 H 0.96998 * 119.99545 * 4.88617 * 14 13 12 36 36 H 1.07992 * 125.99068 * 0.02562 * 18 17 15 37 37 H 1.09002 * 109.47190 * 65.00260 * 21 20 19 38 38 H 1.09005 * 109.47310 * 184.99983 * 21 20 19 39 39 H 1.09006 * 109.47289 * 300.00030 * 22 21 20 40 40 H 1.09005 * 109.47222 * 59.99521 * 22 21 20 41 41 H 1.07996 * 126.29551 * 180.02562 * 24 20 19 42 42 H 1.08997 * 117.50115 * 359.97438 * 25 11 10 43 43 H 1.09006 * 117.50097 * 145.02300 * 25 11 10 44 44 H 1.08996 * 117.50028 * 214.97449 * 26 11 10 45 45 H 1.08999 * 117.49398 * 0.02562 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4102 2.0970 -1.3965 5 1 1.4940 2.6259 0.7856 6 1 3.5886 1.4166 0.6108 7 6 2.0102 -1.2021 -0.0005 8 1 1.4745 -2.1350 0.0939 9 7 3.3738 -1.2054 -0.1265 10 6 4.0965 -2.4752 -0.2326 11 6 5.5797 -2.1981 -0.4862 12 6 5.9516 -1.8685 -1.9333 13 6 5.6992 -3.0922 -2.8162 14 7 6.1638 -2.8161 -4.1779 15 6 5.9536 -3.7177 -5.1574 16 8 5.2976 -4.7169 -4.9335 17 6 6.5192 -3.4926 -6.5001 18 6 7.2923 -2.3830 -6.9094 19 7 7.6063 -2.5509 -8.1644 20 7 7.0495 -3.7534 -8.6140 21 6 7.1688 -4.2983 -9.9686 22 6 6.6816 -3.2596 -10.9809 23 9 6.7961 -3.7797 -12.2746 24 6 6.3875 -4.3236 -7.5946 25 6 6.5971 -2.9840 0.3436 26 6 6.3672 -1.4972 0.6227 27 1 -0.4850 0.8401 -0.0004 28 1 3.8611 -0.3669 -0.1453 29 1 3.9851 -3.0355 0.6956 30 1 3.6891 -3.0571 -1.0594 31 1 5.3424 -1.0354 -2.2841 32 1 7.0054 -1.5947 -1.9843 33 1 6.2408 -3.9483 -2.4141 34 1 4.6320 -3.3133 -2.8342 35 1 6.6226 -1.9844 -4.3744 36 1 7.5759 -1.5444 -6.2909 37 1 8.2116 -4.5421 -10.1717 38 1 6.5619 -5.1999 -10.0524 39 1 5.6388 -3.0157 -10.7779 40 1 7.2885 -2.3580 -10.8971 41 1 5.8510 -5.2604 -7.6251 42 1 6.2098 -3.6980 1.0703 43 1 7.5316 -3.2663 -0.1414 44 1 7.1503 -0.8016 0.3214 45 1 5.8286 -1.2340 1.5331 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001165906319.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:49:18 Heat of formation + Delta-G solvation = -1.774473 kcal Electronic energy + Delta-G solvation = -26229.330879 eV Core-core repulsion = 22197.973217 eV Total energy + Delta-G solvation = -4031.357662 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.170 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -48.79957 -42.43675 -40.36585 -39.44880 -36.15640 -35.72035 -35.22493 -33.18794 -31.81304 -31.26296 -29.81419 -28.06691 -25.39735 -24.56044 -24.28659 -23.40981 -22.80530 -21.77163 -21.21967 -20.38136 -19.37286 -18.83696 -17.51184 -17.37556 -17.02628 -16.79915 -16.55898 -16.53835 -16.16702 -16.13634 -15.72179 -15.43260 -15.22503 -14.99705 -14.69802 -14.67074 -14.18334 -13.96984 -13.84093 -13.72277 -13.53241 -13.04055 -12.84112 -12.66489 -12.44022 -12.29186 -12.24892 -12.16282 -11.92745 -11.84058 -11.73849 -11.10972 -10.98146 -10.85186 -10.66797 -10.60649 -10.14674 -9.68978 -9.26219 -8.02283 -5.34852 0.45809 1.11972 1.19959 1.37799 1.42226 1.50489 2.29562 2.46263 2.49662 2.87285 3.13313 3.27983 3.55912 3.72439 3.74380 3.78361 3.83519 3.91235 3.96574 4.06136 4.09349 4.14936 4.18140 4.23125 4.46309 4.49075 4.50954 4.65134 4.73382 4.75095 4.87654 4.95095 5.00589 5.11777 5.19987 5.31390 5.34324 5.37533 5.39071 5.52719 5.73257 5.76608 6.22068 6.42034 6.66462 7.09658 7.32855 7.86024 8.08610 9.19586 Molecular weight = 324.17amu Principal moments of inertia in cm(-1) A = 0.014228 B = 0.002267 C = 0.002096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1967.455128 B =12350.255383 C =13354.964126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.985 5.985 2 C -0.067 4.067 3 Si 0.959 3.041 4 H -0.277 1.277 5 H -0.296 1.296 6 H -0.246 1.246 7 C -0.236 4.236 8 H 0.049 0.951 9 N -0.749 5.749 10 C 0.187 3.813 11 C -0.144 4.144 12 C -0.077 4.077 13 C 0.131 3.869 14 N -0.713 5.713 15 C 0.590 3.410 16 O -0.596 6.596 17 C -0.311 4.311 18 C 0.094 3.906 19 N -0.317 5.317 20 N -0.361 5.361 21 C 0.098 3.902 22 C 0.056 3.944 23 F -0.216 7.216 24 C 0.137 3.863 25 C -0.148 4.148 26 C -0.166 4.166 27 H 0.258 0.742 28 H 0.368 0.632 29 H 0.016 0.984 30 H 0.022 0.978 31 H 0.063 0.937 32 H 0.103 0.897 33 H 0.070 0.930 34 H 0.039 0.961 35 H 0.414 0.586 36 H 0.219 0.781 37 H 0.112 0.888 38 H 0.137 0.863 39 H 0.085 0.915 40 H 0.088 0.912 41 H 0.207 0.793 42 H 0.090 0.910 43 H 0.120 0.880 44 H 0.116 0.884 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.341 -6.240 -18.719 31.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.636 5.636 2 C -0.258 4.258 3 Si 0.785 3.215 4 H -0.203 1.203 5 H -0.223 1.223 6 H -0.170 1.170 7 C -0.367 4.367 8 H 0.067 0.933 9 N -0.395 5.395 10 C 0.061 3.939 11 C -0.146 4.146 12 C -0.115 4.115 13 C 0.007 3.993 14 N -0.364 5.364 15 C 0.379 3.621 16 O -0.478 6.478 17 C -0.326 4.326 18 C -0.094 4.094 19 N -0.136 5.136 20 N -0.139 5.139 21 C -0.022 4.022 22 C 0.000 4.000 23 F -0.198 7.198 24 C -0.015 4.015 25 C -0.186 4.186 26 C -0.203 4.203 27 H 0.066 0.934 28 H 0.202 0.798 29 H 0.034 0.966 30 H 0.040 0.960 31 H 0.082 0.918 32 H 0.121 0.879 33 H 0.088 0.912 34 H 0.058 0.942 35 H 0.251 0.749 36 H 0.236 0.764 37 H 0.130 0.870 38 H 0.155 0.845 39 H 0.104 0.896 40 H 0.107 0.893 41 H 0.223 0.777 42 H 0.109 0.891 43 H 0.138 0.862 44 H 0.134 0.866 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 24.346 -6.627 -19.742 32.038 hybrid contribution -0.872 0.844 0.845 1.479 sum 23.474 -5.783 -18.897 30.685 Atomic orbital electron populations 1.69923 1.07339 1.26728 1.59607 1.25577 0.96145 1.01570 1.02542 0.85328 0.78944 0.79147 0.78049 1.20298 1.22322 1.17041 1.19022 0.83384 0.93430 1.40849 0.93298 1.42606 1.02850 1.04191 1.89833 1.20272 0.89220 0.87210 0.97226 1.21466 0.91810 1.08029 0.93248 1.21152 1.02910 0.96527 0.90870 1.21182 0.98910 0.98506 0.80720 1.45621 1.60123 1.22009 1.08658 1.17583 0.78434 0.82208 0.83918 1.90771 1.42384 1.30999 1.83659 1.20210 1.15604 1.01500 0.95297 1.24536 0.94314 0.98134 0.92442 1.77142 1.21988 1.00807 1.13705 1.48450 1.38841 1.16532 1.10081 1.22577 1.06376 0.97613 0.75659 1.22138 1.04146 0.96938 0.76762 1.92790 1.97805 1.88960 1.40209 1.23339 0.92983 0.98867 0.86268 1.23100 0.99726 0.94033 1.01721 1.23025 1.02249 0.96226 0.98790 0.93362 0.79826 0.96643 0.95951 0.91838 0.87863 0.91203 0.94225 0.74889 0.76443 0.86964 0.84484 0.89622 0.89334 0.77677 0.89109 0.86158 0.86568 0.90313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -64.56 13.97 21.65 0.30 -64.26 16 2 C -0.07 -4.04 5.50 84.86 0.47 -3.57 16 3 Si 0.96 45.58 27.76 68.60 1.90 47.49 16 4 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 5 H -0.30 -14.28 7.11 99.48 0.71 -13.57 16 6 H -0.25 -10.39 6.50 99.48 0.65 -9.74 16 7 C -0.24 -13.87 10.46 84.03 0.88 -12.99 16 8 H 0.05 3.19 8.06 -2.91 -0.02 3.17 16 9 N -0.75 -35.42 5.37 -343.47 -1.84 -37.27 16 10 C 0.19 7.29 6.12 86.38 0.53 7.81 16 11 C -0.14 -3.93 1.53 -52.18 -0.08 -4.01 16 12 C -0.08 -1.73 5.22 30.60 0.16 -1.57 16 13 C 0.13 3.28 5.47 86.38 0.47 3.76 16 14 N -0.71 -14.92 5.54 -466.37 -2.58 -17.50 16 15 C 0.59 14.93 7.81 86.66 0.68 15.61 16 16 O -0.60 -20.48 16.88 -4.06 -0.07 -20.54 16 17 C -0.31 -5.89 6.13 -20.15 -0.12 -6.01 16 18 C 0.09 1.37 11.51 85.65 0.99 2.36 16 19 N -0.32 -5.10 12.33 -56.27 -0.69 -5.79 16 20 N -0.36 -4.69 3.65 -346.29 -1.26 -5.95 16 21 C 0.10 0.66 6.94 86.38 0.60 1.25 16 22 C 0.06 0.48 7.73 71.98 0.56 1.03 16 23 F -0.22 -2.69 17.36 44.97 0.78 -1.91 16 24 C 0.14 2.11 11.25 84.28 0.95 3.06 16 25 C -0.15 -3.14 9.90 30.60 0.30 -2.84 16 26 C -0.17 -3.93 9.82 30.60 0.30 -3.63 16 27 H 0.26 15.99 8.31 -92.71 -0.77 15.22 16 28 H 0.37 16.32 5.48 -92.71 -0.51 15.81 16 29 H 0.02 0.63 7.94 -2.39 -0.02 0.61 16 30 H 0.02 0.94 6.72 -2.39 -0.02 0.93 16 31 H 0.06 1.64 8.14 -2.38 -0.02 1.63 16 32 H 0.10 1.55 8.09 -2.39 -0.02 1.53 16 33 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 34 H 0.04 1.32 6.92 -2.39 -0.02 1.31 16 35 H 0.41 5.62 7.45 -92.71 -0.69 4.93 16 36 H 0.22 1.62 7.51 -2.91 -0.02 1.60 16 37 H 0.11 0.56 8.14 -2.39 -0.02 0.54 16 38 H 0.14 0.25 8.06 -2.38 -0.02 0.23 16 39 H 0.09 0.70 8.14 -2.38 -0.02 0.68 16 40 H 0.09 0.83 8.14 -2.38 -0.02 0.81 16 41 H 0.21 2.35 8.06 -2.91 -0.02 2.33 16 42 H 0.09 2.01 8.08 -2.39 -0.02 1.99 16 43 H 0.12 1.89 8.14 -2.38 -0.02 1.87 16 44 H 0.12 2.15 8.14 -2.39 -0.02 2.13 16 45 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 Total: -1.00 -82.62 384.77 2.96 -79.65 By element: Atomic # 1 Polarization: 26.08 SS G_CDS: -0.24 Total: 25.83 kcal Atomic # 6 Polarization: -6.42 SS G_CDS: 6.67 Total: 0.25 kcal Atomic # 7 Polarization: -124.69 SS G_CDS: -6.08 Total: -130.77 kcal Atomic # 8 Polarization: -20.48 SS G_CDS: -0.07 Total: -20.54 kcal Atomic # 9 Polarization: -2.69 SS G_CDS: 0.78 Total: -1.91 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 1.90 Total: 47.49 kcal Total: -82.62 2.96 -79.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165906319.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.876 kcal (2) G-P(sol) polarization free energy of solvation -82.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds