Wall clock time and date at job start Tue Mar 31 2020 13:56:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86798 * 120.00163 * 2 1 4 4 H 1.48494 * 109.47462 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47226 * 300.00890 * 3 2 1 6 6 H 1.48507 * 109.46939 * 60.00164 * 3 2 1 7 7 C 1.38814 * 119.99858 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99595 * 179.97438 * 7 2 1 9 9 N 1.36930 * 120.00086 * 359.97438 * 7 2 1 10 10 C 1.46590 * 125.30674 * 180.02562 * 9 7 2 11 11 C 1.53261 * 108.16032 * 177.86178 * 10 9 7 12 12 H 1.09002 * 112.58386 * 222.76598 * 11 10 9 13 13 C 1.54798 * 109.74570 * 96.44492 * 11 10 9 14 14 C 1.56793 * 100.67106 * 211.98790 * 13 11 10 15 15 N 1.47351 * 105.02925 * 37.17812 * 14 13 11 16 16 C 1.34774 * 125.52907 * 156.46853 * 15 14 13 17 17 O 1.21280 * 119.99956 * 180.02562 * 16 15 14 18 18 C 1.50698 * 120.00030 * 0.03999 * 16 15 14 19 19 O 1.42898 * 109.47274 * 179.97438 * 18 16 15 20 20 C 1.42898 * 114.00363 * 180.02562 * 19 18 16 21 21 C 1.52999 * 109.47146 * 180.02562 * 20 19 18 22 22 H 1.08997 * 110.43808 * 303.90721 * 21 20 19 23 23 C 1.54813 * 110.48390 * 181.21960 * 21 20 19 24 24 C 1.54996 * 102.09391 * 220.44133 * 23 21 20 25 25 O 1.44382 * 103.48676 * 37.02627 * 24 23 21 26 26 C 1.43742 * 106.97568 * 319.93630 * 25 24 23 27 27 C 1.47217 * 108.94132 * 336.50749 * 15 14 13 28 28 H 1.08998 * 112.72345 * 235.96894 * 27 15 14 29 29 C 1.46606 * 125.30808 * 359.97257 * 9 7 2 30 30 H 0.97006 * 120.00373 * 359.97438 * 1 2 3 31 31 H 1.09007 * 109.73237 * 58.17568 * 10 9 7 32 32 H 1.09002 * 109.73439 * 297.55573 * 10 9 7 33 33 H 1.09001 * 111.02278 * 329.68598 * 13 11 10 34 34 H 1.09004 * 111.01659 * 93.58029 * 13 11 10 35 35 H 1.08999 * 110.31895 * 278.27006 * 14 13 11 36 36 H 1.08991 * 110.34825 * 156.10845 * 14 13 11 37 37 H 1.08996 * 109.47526 * 300.00004 * 18 16 15 38 38 H 1.09004 * 109.46734 * 60.00225 * 18 16 15 39 39 H 1.09003 * 109.46859 * 300.00140 * 20 19 18 40 40 H 1.09002 * 109.47047 * 59.99962 * 20 19 18 41 41 H 1.09000 * 110.91141 * 338.64346 * 23 21 20 42 42 H 1.09001 * 110.90837 * 102.24473 * 23 21 20 43 43 H 1.09001 * 110.62064 * 278.52844 * 24 23 21 44 44 H 1.08997 * 110.75361 * 155.58809 * 24 23 21 45 45 H 1.08998 * 109.88553 * 267.08987 * 26 25 24 46 46 H 1.09006 * 110.00369 * 146.00731 * 26 25 24 47 47 H 1.09002 * 109.91541 * 317.19568 * 29 9 7 48 48 H 1.09002 * 109.90995 * 78.47804 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7101 1.3464 -0.0006 5 1 1.8913 2.3965 -1.2124 6 1 1.8914 2.3964 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3255 -2.3880 -0.0005 10 6 1.9379 -3.7199 -0.0005 11 6 0.8152 -4.7618 0.0538 12 1 1.0341 -5.5775 0.7429 13 6 0.4943 -5.2598 -1.3763 14 6 -1.0403 -5.5530 -1.2441 15 7 -1.5591 -4.4867 -0.3695 16 6 -2.8368 -4.0600 -0.3280 17 8 -3.1550 -3.1712 0.4333 18 6 -3.8703 -4.6877 -1.2274 19 8 -5.1386 -4.0701 -0.9993 20 6 -6.1945 -4.5955 -1.8061 21 6 -7.4981 -3.8639 -1.4797 22 1 -7.7196 -3.9377 -0.4151 23 6 -8.6656 -4.4363 -2.3200 24 6 -9.4450 -3.1541 -2.7087 25 8 -8.4022 -2.1806 -2.9313 26 6 -7.4106 -2.3872 -1.9114 27 6 -0.4550 -3.9622 0.4511 28 1 -0.6626 -4.0155 1.5198 29 6 -0.1343 -2.5236 0.0006 30 1 -0.4851 0.8401 0.0004 31 1 2.5832 -3.8282 0.8713 32 1 2.5229 -3.8560 -0.9102 33 1 0.6825 -4.4794 -2.1136 34 1 1.0585 -6.1623 -1.6118 35 1 -1.2011 -6.5296 -0.7874 36 1 -1.5202 -5.5087 -2.2216 37 1 -3.5795 -4.5473 -2.2685 38 1 -3.9414 -5.7536 -1.0106 39 1 -5.9523 -4.4531 -2.8593 40 1 -6.3134 -5.6594 -1.6012 41 1 -8.2921 -4.9484 -3.2068 42 1 -9.2864 -5.1021 -1.7206 43 1 -10.0965 -2.8391 -1.8936 44 1 -10.0216 -3.3140 -3.6197 45 1 -7.6148 -1.7392 -1.0591 46 1 -6.4177 -2.1753 -2.3083 47 1 -0.5730 -1.8096 0.6976 48 1 -0.5236 -2.3537 -1.0033 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001189293683.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:56:59 Heat of formation + Delta-G solvation = -84.725433 kcal Electronic energy + Delta-G solvation = -28314.006063 eV Core-core repulsion = 24370.218932 eV Total energy + Delta-G solvation = -3943.787132 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.11177 -39.71131 -38.25734 -37.01104 -34.90582 -33.09861 -32.29351 -30.61864 -29.95136 -29.06337 -27.72664 -26.41491 -25.41213 -24.40226 -22.78738 -22.59258 -20.83193 -20.49868 -19.68640 -18.65642 -17.34627 -16.99898 -16.75954 -16.56968 -16.15604 -15.89285 -15.29556 -15.22792 -14.97680 -14.53200 -14.14845 -13.93856 -13.56310 -13.31282 -13.13621 -12.77283 -12.62155 -12.46538 -12.14000 -11.95539 -11.94082 -11.90246 -11.55604 -11.53166 -11.25358 -11.19208 -11.02405 -10.94153 -10.78133 -10.41581 -10.15435 -10.01058 -9.86824 -9.76657 -9.74718 -9.67909 -9.34090 -8.56417 -8.19080 -6.78621 -5.58833 -3.01466 2.83322 3.00015 3.44320 3.48674 3.52430 3.73447 3.78204 4.26000 4.50753 4.53800 4.58486 4.69597 4.73956 4.88209 4.97011 5.01084 5.04591 5.07306 5.12540 5.21066 5.26668 5.36278 5.42793 5.46147 5.50937 5.54952 5.59050 5.59934 5.65841 5.80466 5.80665 5.92413 5.93029 6.02192 6.23067 6.32346 6.53481 6.57420 6.66751 6.68239 6.87128 6.97561 7.57292 7.68122 7.90240 8.00473 8.41300 8.59356 9.28008 9.88996 10.50876 11.45406 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.013387 B = 0.003015 C = 0.002547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2091.132966 B = 9285.022819 C =10992.377596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C -0.008 4.008 3 Si 0.912 3.088 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.290 1.290 7 C -0.233 4.233 8 H 0.079 0.921 9 N -0.602 5.602 10 C 0.145 3.855 11 C -0.110 4.110 12 H 0.087 0.913 13 C -0.120 4.120 14 C 0.099 3.901 15 N -0.608 5.608 16 C 0.524 3.476 17 O -0.504 6.504 18 C 0.053 3.947 19 O -0.360 6.360 20 C 0.069 3.931 21 C -0.120 4.120 22 H 0.094 0.906 23 C -0.148 4.148 24 C 0.046 3.954 25 O -0.380 6.380 26 C 0.052 3.948 27 C 0.117 3.883 28 H 0.082 0.918 29 C 0.165 3.835 30 H 0.253 0.747 31 H 0.023 0.977 32 H 0.025 0.975 33 H 0.082 0.918 34 H 0.079 0.921 35 H 0.065 0.935 36 H 0.069 0.931 37 H 0.077 0.923 38 H 0.074 0.926 39 H 0.055 0.945 40 H 0.053 0.947 41 H 0.079 0.921 42 H 0.083 0.917 43 H 0.060 0.940 44 H 0.092 0.908 45 H 0.064 0.936 46 H 0.093 0.907 47 H 0.096 0.904 48 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.289 -17.042 -5.805 22.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.204 4.204 3 Si 0.743 3.257 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.217 1.217 7 C -0.361 4.361 8 H 0.097 0.903 9 N -0.329 5.329 10 C 0.018 3.982 11 C -0.129 4.129 12 H 0.105 0.895 13 C -0.158 4.158 14 C -0.024 4.024 15 N -0.345 5.345 16 C 0.310 3.690 17 O -0.377 6.377 18 C -0.027 4.027 19 O -0.278 6.278 20 C -0.008 4.008 21 C -0.139 4.139 22 H 0.112 0.888 23 C -0.185 4.185 24 C -0.031 4.031 25 O -0.299 6.299 26 C -0.024 4.024 27 C 0.013 3.987 28 H 0.100 0.900 29 C 0.039 3.961 30 H 0.064 0.936 31 H 0.041 0.959 32 H 0.043 0.957 33 H 0.101 0.899 34 H 0.098 0.902 35 H 0.083 0.917 36 H 0.087 0.913 37 H 0.095 0.905 38 H 0.092 0.908 39 H 0.073 0.927 40 H 0.071 0.929 41 H 0.098 0.902 42 H 0.102 0.898 43 H 0.079 0.921 44 H 0.110 0.890 45 H 0.082 0.918 46 H 0.111 0.889 47 H 0.114 0.886 48 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges -13.634 -15.970 -5.411 21.684 hybrid contribution 0.530 0.319 -0.108 0.628 sum -13.104 -15.651 -5.519 21.145 Atomic orbital electron populations 1.69934 1.04742 1.24895 1.56375 1.24863 0.95706 0.97791 1.02057 0.86040 0.78575 0.83814 0.77273 1.20539 1.21768 1.21690 1.19056 0.90428 0.82249 1.44360 0.90323 1.44173 1.01582 0.99926 1.87180 1.20993 0.93366 0.85605 0.98206 1.22865 0.95861 0.97906 0.96314 0.89512 1.23100 0.93496 1.01652 0.97590 1.22625 0.95397 0.90498 0.93914 1.48406 1.07477 1.37779 1.40863 1.19681 0.81531 0.83466 0.84288 1.90786 1.79087 1.28814 1.39048 1.22171 0.84579 0.96833 0.99157 1.88021 1.15777 1.61266 1.62758 1.22563 0.86776 0.96836 0.94576 1.22530 0.93670 0.95852 1.01827 0.88785 1.23144 0.96442 0.98581 1.00379 1.23527 0.91064 0.87112 1.01378 1.88896 1.32801 1.56246 1.52000 1.23240 0.93259 0.94483 0.91432 1.22920 0.83494 0.97718 0.94551 0.89955 1.21659 0.84267 0.90052 1.00086 0.93630 0.95891 0.95711 0.89888 0.90207 0.91669 0.91265 0.90516 0.90772 0.92707 0.92914 0.90196 0.89840 0.92136 0.88973 0.91797 0.88868 0.88587 0.96298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.20 10.17 55.49 0.56 -27.64 16 2 C -0.01 -0.22 5.48 -17.43 -0.10 -0.31 16 3 Si 0.91 22.74 29.55 -169.99 -5.02 17.71 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 6 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 7 C -0.23 -6.62 10.25 -15.06 -0.15 -6.78 16 8 H 0.08 2.15 7.83 -52.48 -0.41 1.73 16 9 N -0.60 -15.68 3.37 -172.22 -0.58 -16.26 16 10 C 0.14 2.93 6.66 -3.86 -0.03 2.91 16 11 C -0.11 -1.80 3.85 -88.34 -0.34 -2.14 16 12 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 13 C -0.12 -1.61 6.38 -23.73 -0.15 -1.76 16 14 C 0.10 1.20 6.72 -1.53 -0.01 1.19 16 15 N -0.61 -10.41 2.89 -160.50 -0.46 -10.87 16 16 C 0.52 9.66 7.75 -10.99 -0.09 9.58 16 17 O -0.50 -11.98 16.62 -14.35 -0.24 -12.22 16 18 C 0.05 0.69 5.42 36.00 0.20 0.89 16 19 O -0.36 -5.25 9.62 -55.14 -0.53 -5.78 16 20 C 0.07 0.70 5.03 37.16 0.19 0.89 16 21 C -0.12 -1.17 3.34 -89.09 -0.30 -1.47 16 22 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 23 C -0.15 -1.05 6.71 -24.72 -0.17 -1.22 16 24 C 0.05 0.38 7.72 38.21 0.29 0.67 16 25 O -0.38 -4.68 11.52 -35.23 -0.41 -5.08 16 26 C 0.05 0.63 7.23 37.73 0.27 0.90 16 27 C 0.12 2.32 3.84 -65.75 -0.25 2.07 16 28 H 0.08 1.70 8.14 -51.93 -0.42 1.28 16 29 C 0.17 4.25 4.84 -3.40 -0.02 4.23 16 30 H 0.25 7.65 8.31 -40.82 -0.34 7.31 16 31 H 0.02 0.46 8.14 -51.92 -0.42 0.04 16 32 H 0.03 0.49 7.73 -51.93 -0.40 0.09 16 33 H 0.08 1.31 7.89 -51.93 -0.41 0.90 16 34 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 35 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.07 0.70 7.48 -51.93 -0.39 0.31 16 37 H 0.08 0.87 7.84 -51.93 -0.41 0.46 16 38 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.08 0.52 7.87 -51.93 -0.41 0.11 16 42 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 43 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 46 H 0.09 1.25 7.60 -51.93 -0.39 0.86 16 47 H 0.10 2.92 6.22 -51.93 -0.32 2.60 16 48 H 0.02 0.54 7.96 -51.93 -0.41 0.13 16 LS Contribution 378.87 15.07 5.71 5.71 Total: -1.00 -36.38 378.87 -9.80 -46.19 By element: Atomic # 1 Polarization: 6.76 SS G_CDS: -8.19 Total: -1.42 kcal Atomic # 6 Polarization: 10.31 SS G_CDS: -0.64 Total: 9.67 kcal Atomic # 7 Polarization: -54.29 SS G_CDS: -0.48 Total: -54.77 kcal Atomic # 8 Polarization: -21.90 SS G_CDS: -1.17 Total: -23.08 kcal Atomic # 14 Polarization: 22.74 SS G_CDS: -5.02 Total: 17.71 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -36.38 -9.80 -46.19 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001189293683.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.540 kcal (2) G-P(sol) polarization free energy of solvation -36.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds