Wall clock time and date at job start Tue Mar 31 2020 13:56:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86798 * 120.00163 * 2 1 4 4 H 1.48494 * 109.47462 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47226 * 300.00890 * 3 2 1 6 6 H 1.48507 * 109.46939 * 60.00164 * 3 2 1 7 7 C 1.38814 * 119.99858 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99595 * 179.97438 * 7 2 1 9 9 N 1.36930 * 120.00086 * 359.97438 * 7 2 1 10 10 C 1.46590 * 125.30674 * 180.02562 * 9 7 2 11 11 C 1.53261 * 108.16032 * 177.86178 * 10 9 7 12 12 H 1.09002 * 112.58386 * 222.76598 * 11 10 9 13 13 C 1.54798 * 109.74570 * 96.44492 * 11 10 9 14 14 C 1.56793 * 100.67106 * 211.98790 * 13 11 10 15 15 N 1.47351 * 105.02925 * 37.17812 * 14 13 11 16 16 C 1.34774 * 125.52907 * 156.46853 * 15 14 13 17 17 O 1.21280 * 119.99956 * 180.02562 * 16 15 14 18 18 C 1.50698 * 120.00030 * 0.03999 * 16 15 14 19 19 O 1.42898 * 109.47274 * 179.97438 * 18 16 15 20 20 C 1.42898 * 114.00363 * 180.02562 * 19 18 16 21 21 C 1.52999 * 109.47146 * 180.02562 * 20 19 18 22 22 H 1.08997 * 110.43808 * 303.90721 * 21 20 19 23 23 C 1.54813 * 110.48390 * 181.21960 * 21 20 19 24 24 C 1.54996 * 102.09391 * 220.44133 * 23 21 20 25 25 O 1.44382 * 103.48676 * 37.02627 * 24 23 21 26 26 C 1.43742 * 106.97568 * 319.93630 * 25 24 23 27 27 C 1.47217 * 108.94132 * 336.50749 * 15 14 13 28 28 H 1.08998 * 112.72345 * 235.96894 * 27 15 14 29 29 C 1.46606 * 125.30808 * 359.97257 * 9 7 2 30 30 H 0.97006 * 120.00373 * 359.97438 * 1 2 3 31 31 H 1.09007 * 109.73237 * 58.17568 * 10 9 7 32 32 H 1.09002 * 109.73439 * 297.55573 * 10 9 7 33 33 H 1.09001 * 111.02278 * 329.68598 * 13 11 10 34 34 H 1.09004 * 111.01659 * 93.58029 * 13 11 10 35 35 H 1.08999 * 110.31895 * 278.27006 * 14 13 11 36 36 H 1.08991 * 110.34825 * 156.10845 * 14 13 11 37 37 H 1.08996 * 109.47526 * 300.00004 * 18 16 15 38 38 H 1.09004 * 109.46734 * 60.00225 * 18 16 15 39 39 H 1.09003 * 109.46859 * 300.00140 * 20 19 18 40 40 H 1.09002 * 109.47047 * 59.99962 * 20 19 18 41 41 H 1.09000 * 110.91141 * 338.64346 * 23 21 20 42 42 H 1.09001 * 110.90837 * 102.24473 * 23 21 20 43 43 H 1.09001 * 110.62064 * 278.52844 * 24 23 21 44 44 H 1.08997 * 110.75361 * 155.58809 * 24 23 21 45 45 H 1.08998 * 109.88553 * 267.08987 * 26 25 24 46 46 H 1.09006 * 110.00369 * 146.00731 * 26 25 24 47 47 H 1.09002 * 109.91541 * 317.19568 * 29 9 7 48 48 H 1.09002 * 109.90995 * 78.47804 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7101 1.3464 -0.0006 5 1 1.8913 2.3965 -1.2124 6 1 1.8914 2.3964 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3255 -2.3880 -0.0005 10 6 1.9379 -3.7199 -0.0005 11 6 0.8152 -4.7618 0.0538 12 1 1.0341 -5.5775 0.7429 13 6 0.4943 -5.2598 -1.3763 14 6 -1.0403 -5.5530 -1.2441 15 7 -1.5591 -4.4867 -0.3695 16 6 -2.8368 -4.0600 -0.3280 17 8 -3.1550 -3.1712 0.4333 18 6 -3.8703 -4.6877 -1.2274 19 8 -5.1386 -4.0701 -0.9993 20 6 -6.1945 -4.5955 -1.8061 21 6 -7.4981 -3.8639 -1.4797 22 1 -7.7196 -3.9377 -0.4151 23 6 -8.6656 -4.4363 -2.3200 24 6 -9.4450 -3.1541 -2.7087 25 8 -8.4022 -2.1806 -2.9313 26 6 -7.4106 -2.3872 -1.9114 27 6 -0.4550 -3.9622 0.4511 28 1 -0.6626 -4.0155 1.5198 29 6 -0.1343 -2.5236 0.0006 30 1 -0.4851 0.8401 0.0004 31 1 2.5832 -3.8282 0.8713 32 1 2.5229 -3.8560 -0.9102 33 1 0.6825 -4.4794 -2.1136 34 1 1.0585 -6.1623 -1.6118 35 1 -1.2011 -6.5296 -0.7874 36 1 -1.5202 -5.5087 -2.2216 37 1 -3.5795 -4.5473 -2.2685 38 1 -3.9414 -5.7536 -1.0106 39 1 -5.9523 -4.4531 -2.8593 40 1 -6.3134 -5.6594 -1.6012 41 1 -8.2921 -4.9484 -3.2068 42 1 -9.2864 -5.1021 -1.7206 43 1 -10.0965 -2.8391 -1.8936 44 1 -10.0216 -3.3140 -3.6197 45 1 -7.6148 -1.7392 -1.0591 46 1 -6.4177 -2.1753 -2.3083 47 1 -0.5730 -1.8096 0.6976 48 1 -0.5236 -2.3537 -1.0033 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001189293683.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:56:58 Heat of formation + Delta-G solvation = -111.025128 kcal Electronic energy + Delta-G solvation = -28315.146504 eV Core-core repulsion = 24370.218932 eV Total energy + Delta-G solvation = -3944.927572 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.48905 -40.56690 -39.57284 -38.22375 -36.62906 -34.17966 -33.88102 -32.22760 -30.95632 -30.39141 -29.10226 -27.87338 -26.55122 -26.14454 -23.89277 -23.39530 -22.33854 -21.61673 -21.07073 -20.09287 -18.94780 -18.36902 -17.81853 -17.71307 -17.20129 -16.89449 -16.75338 -16.51362 -16.14188 -15.92367 -15.57910 -15.20481 -15.05629 -14.62088 -14.39444 -14.03919 -13.86152 -13.72799 -13.46678 -13.38175 -13.24356 -12.98324 -12.86018 -12.82673 -12.64987 -12.58438 -12.17881 -12.11613 -12.07278 -11.89028 -11.70354 -11.61583 -11.47640 -11.40507 -10.82292 -10.76171 -10.75140 -10.62486 -9.62872 -8.93435 -7.81142 -5.26805 1.40905 1.43527 1.54235 1.59301 1.71757 2.46119 2.79179 2.99924 3.29468 3.37806 3.54241 3.60299 3.69431 3.82447 3.85567 3.92891 4.00545 4.12132 4.21342 4.25530 4.31351 4.33210 4.36688 4.39931 4.50625 4.51655 4.57043 4.66526 4.72040 4.79904 4.85100 4.86143 4.87675 4.94810 5.01404 5.12339 5.17009 5.19723 5.21636 5.45369 5.49496 5.55652 5.79280 5.87600 6.09572 6.22861 6.60841 7.04839 7.22442 7.76772 8.36939 9.21079 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.013387 B = 0.003015 C = 0.002547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2091.132966 B = 9285.022819 C =10992.377596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C -0.075 4.075 3 Si 0.983 3.017 4 H -0.257 1.257 5 H -0.294 1.294 6 H -0.295 1.295 7 C -0.240 4.240 8 H 0.090 0.910 9 N -0.625 5.625 10 C 0.135 3.865 11 C -0.093 4.093 12 H 0.130 0.870 13 C -0.113 4.113 14 C 0.095 3.905 15 N -0.609 5.609 16 C 0.508 3.492 17 O -0.579 6.579 18 C 0.063 3.937 19 O -0.401 6.401 20 C 0.067 3.933 21 C -0.120 4.120 22 H 0.090 0.910 23 C -0.134 4.134 24 C 0.035 3.965 25 O -0.407 6.407 26 C 0.049 3.951 27 C 0.119 3.881 28 H 0.066 0.934 29 C 0.184 3.816 30 H 0.241 0.759 31 H 0.030 0.970 32 H 0.038 0.962 33 H 0.051 0.949 34 H 0.129 0.871 35 H 0.111 0.889 36 H 0.096 0.904 37 H 0.099 0.901 38 H 0.122 0.878 39 H 0.062 0.938 40 H 0.086 0.914 41 H 0.092 0.908 42 H 0.109 0.891 43 H 0.066 0.934 44 H 0.112 0.888 45 H 0.049 0.951 46 H 0.069 0.931 47 H 0.035 0.965 48 H -0.023 1.023 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.855 -21.503 -7.240 26.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.267 4.267 3 Si 0.810 3.190 4 H -0.181 1.181 5 H -0.221 1.221 6 H -0.222 1.222 7 C -0.369 4.369 8 H 0.108 0.892 9 N -0.352 5.352 10 C 0.010 3.990 11 C -0.112 4.112 12 H 0.148 0.852 13 C -0.151 4.151 14 C -0.025 4.025 15 N -0.344 5.344 16 C 0.298 3.702 17 O -0.457 6.457 18 C -0.016 4.016 19 O -0.320 6.320 20 C -0.009 4.009 21 C -0.139 4.139 22 H 0.109 0.891 23 C -0.171 4.171 24 C -0.041 4.041 25 O -0.326 6.326 26 C -0.028 4.028 27 C 0.014 3.986 28 H 0.084 0.916 29 C 0.058 3.942 30 H 0.051 0.949 31 H 0.048 0.952 32 H 0.056 0.944 33 H 0.069 0.931 34 H 0.147 0.853 35 H 0.129 0.871 36 H 0.115 0.885 37 H 0.117 0.883 38 H 0.139 0.861 39 H 0.081 0.919 40 H 0.104 0.896 41 H 0.111 0.889 42 H 0.127 0.873 43 H 0.085 0.915 44 H 0.130 0.870 45 H 0.067 0.933 46 H 0.087 0.913 47 H 0.053 0.947 48 H -0.005 1.005 Dipole moment (debyes) X Y Z Total from point charges -13.154 -20.520 -6.885 25.328 hybrid contribution 0.412 1.716 0.333 1.796 sum -12.742 -18.803 -6.553 23.640 Atomic orbital electron populations 1.70291 1.06637 1.24744 1.58342 1.25822 0.96499 1.01671 1.02710 0.84946 0.78411 0.79057 0.76543 1.18061 1.22093 1.22181 1.19547 0.91196 0.83525 1.42636 0.89179 1.44504 1.02020 1.01732 1.86922 1.21306 0.94959 0.83903 0.98822 1.22917 0.91498 0.97232 0.99536 0.85189 1.23139 0.95093 1.02601 0.94259 1.23056 0.94279 0.90431 0.94760 1.48542 1.06574 1.38407 1.40839 1.20894 0.82743 0.82586 0.84013 1.90750 1.80518 1.32159 1.42298 1.22211 0.82662 0.98252 0.98436 1.87993 1.17017 1.62839 1.64156 1.22782 0.85349 0.98347 0.94395 1.22562 0.95047 0.94167 1.02127 0.89141 1.23131 0.95179 0.98157 1.00678 1.23834 0.90521 0.86937 1.02759 1.88861 1.33801 1.57928 1.52058 1.23160 0.92277 0.96491 0.90841 1.22571 0.86816 0.94966 0.94267 0.91591 1.21147 0.84096 0.92921 0.96070 0.94909 0.95173 0.94413 0.93061 0.85255 0.87121 0.88537 0.88298 0.86068 0.91933 0.89632 0.88907 0.87294 0.91526 0.87006 0.93260 0.91266 0.94697 1.00533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -63.24 10.17 21.65 0.22 -63.02 16 2 C -0.07 -4.55 5.48 84.86 0.47 -4.09 16 3 Si 0.98 48.57 29.55 68.60 2.03 50.60 16 4 H -0.26 -11.57 7.11 99.48 0.71 -10.87 16 5 H -0.29 -14.54 7.11 99.48 0.71 -13.83 16 6 H -0.29 -14.66 7.11 99.48 0.71 -13.95 16 7 C -0.24 -14.07 10.25 84.04 0.86 -13.21 16 8 H 0.09 4.93 7.83 -2.91 -0.02 4.91 16 9 N -0.63 -33.70 3.37 -698.79 -2.36 -36.06 16 10 C 0.13 5.32 6.66 86.45 0.58 5.89 16 11 C -0.09 -2.77 3.85 -9.31 -0.04 -2.81 16 12 H 0.13 2.88 8.14 -2.39 -0.02 2.86 16 13 C -0.11 -2.54 6.38 32.54 0.21 -2.34 16 14 C 0.10 1.88 6.72 87.54 0.59 2.47 16 15 N -0.61 -20.31 2.89 -780.10 -2.25 -22.56 16 16 C 0.51 19.07 7.75 87.66 0.68 19.75 16 17 O -0.58 -29.66 16.62 16.01 0.27 -29.40 16 18 C 0.06 1.54 5.42 71.24 0.39 1.93 16 19 O -0.40 -11.54 9.62 -129.94 -1.25 -12.79 16 20 C 0.07 1.22 5.03 71.98 0.36 1.58 16 21 C -0.12 -2.25 3.34 -9.80 -0.03 -2.28 16 22 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 23 C -0.13 -1.56 6.71 31.90 0.21 -1.35 16 24 C 0.04 0.53 7.72 72.67 0.56 1.09 16 25 O -0.41 -10.21 11.52 -148.98 -1.72 -11.93 16 26 C 0.05 1.26 7.23 72.35 0.52 1.78 16 27 C 0.12 4.81 3.84 46.01 0.18 4.99 16 28 H 0.07 2.85 8.14 -2.39 -0.02 2.83 16 29 C 0.18 10.14 4.84 86.74 0.42 10.56 16 30 H 0.24 15.80 8.31 -92.70 -0.77 15.03 16 31 H 0.03 1.15 8.14 -2.38 -0.02 1.13 16 32 H 0.04 1.41 7.73 -2.39 -0.02 1.39 16 33 H 0.05 1.50 7.89 -2.39 -0.02 1.48 16 34 H 0.13 1.72 8.14 -2.38 -0.02 1.70 16 35 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.10 1.44 7.48 -2.39 -0.02 1.43 16 37 H 0.10 1.95 7.84 -2.39 -0.02 1.93 16 38 H 0.12 1.80 8.14 -2.39 -0.02 1.78 16 39 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 40 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 41 H 0.09 0.87 7.87 -2.39 -0.02 0.85 16 42 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 43 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 44 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 45 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 46 H 0.07 2.05 7.60 -2.38 -0.02 2.03 16 47 H 0.03 2.33 6.22 -2.39 -0.01 2.32 16 48 H -0.02 -1.44 7.96 -2.39 -0.02 -1.46 16 Total: -1.00 -92.23 378.87 1.82 -90.41 By element: Atomic # 1 Polarization: 9.82 SS G_CDS: 0.93 Total: 10.75 kcal Atomic # 6 Polarization: 18.03 SS G_CDS: 5.95 Total: 23.98 kcal Atomic # 7 Polarization: -117.24 SS G_CDS: -4.39 Total: -121.63 kcal Atomic # 8 Polarization: -51.42 SS G_CDS: -2.70 Total: -54.12 kcal Atomic # 14 Polarization: 48.57 SS G_CDS: 2.03 Total: 50.60 kcal Total: -92.23 1.82 -90.41 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001189293683.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.613 kcal (2) G-P(sol) polarization free energy of solvation -92.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds