Wall clock time and date at job start Tue Mar 31 2020 13:57:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86801 * 119.99706 * 2 1 4 4 H 1.48503 * 109.47306 * 95.32860 * 3 2 1 5 5 H 1.48502 * 109.46897 * 215.32268 * 3 2 1 6 6 H 1.48493 * 109.47284 * 335.32295 * 3 2 1 7 7 C 1.38809 * 120.00109 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99958 * 31.84834 * 7 2 1 9 9 N 1.36931 * 120.00159 * 211.85503 * 7 2 1 10 10 C 1.46706 * 125.32413 * 176.18669 * 9 7 2 11 11 C 1.54236 * 106.73099 * 161.68452 * 10 9 7 12 12 H 1.08996 * 114.34181 * 263.48034 * 11 10 9 13 13 C 1.56240 * 107.86266 * 135.41917 * 11 10 9 14 14 C 1.54856 * 102.12315 * 285.88212 * 13 11 10 15 15 N 1.47408 * 104.80877 * 323.15339 * 14 13 11 16 16 C 1.34770 * 125.58663 * 204.57344 * 15 14 13 17 17 O 1.21285 * 119.99618 * 180.02562 * 16 15 14 18 18 C 1.50699 * 120.00484 * 0.04396 * 16 15 14 19 19 O 1.42895 * 109.47383 * 179.97438 * 18 16 15 20 20 C 1.42896 * 114.00187 * 180.02562 * 19 18 16 21 21 C 1.53008 * 109.47297 * 180.02562 * 20 19 18 22 22 H 1.08995 * 110.75395 * 57.01178 * 21 20 19 23 23 C 1.55309 * 110.84761 * 180.71430 * 21 20 19 24 24 C 1.54942 * 100.93802 * 152.31955 * 23 21 20 25 25 O 1.43645 * 105.14232 * 323.55386 * 24 23 21 26 26 C 1.43240 * 109.96555 * 24.42761 * 25 24 23 27 27 C 1.46732 * 108.81731 * 24.60974 * 15 14 13 28 28 H 1.08998 * 111.32751 * 235.44294 * 27 15 14 29 29 C 1.46638 * 125.32369 * 356.48227 * 9 7 2 30 30 H 0.96997 * 120.00040 * 174.98441 * 1 2 3 31 31 H 1.08999 * 109.98357 * 281.15344 * 10 9 7 32 32 H 1.08994 * 109.98560 * 42.47049 * 10 9 7 33 33 H 1.08993 * 110.51241 * 167.77222 * 13 11 10 34 34 H 1.09004 * 111.09589 * 44.24665 * 13 11 10 35 35 H 1.08999 * 110.37045 * 204.32099 * 14 13 11 36 36 H 1.08998 * 110.37441 * 81.98793 * 14 13 11 37 37 H 1.08998 * 109.46978 * 299.99777 * 18 16 15 38 38 H 1.09006 * 109.46761 * 59.99893 * 18 16 15 39 39 H 1.08999 * 109.47080 * 300.00016 * 20 19 18 40 40 H 1.08997 * 109.47459 * 59.99894 * 20 19 18 41 41 H 1.09001 * 111.12165 * 270.23822 * 23 21 20 42 42 H 1.09000 * 111.12418 * 34.39899 * 23 21 20 43 43 H 1.09000 * 110.30652 * 204.63856 * 24 23 21 44 44 H 1.09002 * 110.39613 * 82.51655 * 24 23 21 45 45 H 1.09001 * 109.82910 * 238.76995 * 26 25 24 46 46 H 1.09008 * 109.90285 * 117.84873 * 26 25 24 47 47 H 1.08995 * 109.75664 * 300.93872 * 29 9 7 48 48 H 1.09003 * 109.75316 * 61.63252 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.6103 1.9815 1.3940 5 1 3.4869 1.4753 -0.8095 6 1 1.3959 2.6825 -0.5845 7 6 2.0103 -1.2021 -0.0005 8 1 1.5922 -2.0668 -0.4945 9 7 3.2249 -1.2917 0.6253 10 6 4.0189 -2.5174 0.7649 11 6 5.4596 -2.0779 1.0965 12 1 6.1243 -2.0296 0.2341 13 6 5.9830 -2.9861 2.2551 14 6 5.2155 -2.4273 3.4785 15 7 5.1519 -0.9723 3.2509 16 6 5.0123 -0.0341 4.2083 17 8 4.9712 1.1397 3.9056 18 6 4.9078 -0.4432 5.6549 19 8 4.7683 0.7217 6.4705 20 6 4.6611 0.4433 7.8680 21 6 4.5162 1.7564 8.6400 22 1 3.6550 2.3212 8.2832 23 6 4.4150 1.4915 10.1670 24 6 4.9958 2.8116 10.7335 25 8 6.0463 3.1794 9.8255 26 6 5.8059 2.5987 8.5383 27 6 5.2646 -0.7131 1.8110 28 1 6.0852 -0.0293 1.5943 29 6 3.9327 -0.1787 1.2661 30 1 -0.4850 -0.8368 -0.0734 31 1 3.6183 -3.1308 1.5720 32 1 4.0072 -3.0773 -0.1702 33 1 7.0587 -2.8635 2.3803 34 1 5.7288 -4.0315 2.0795 35 1 5.7585 -2.6441 4.3984 36 1 4.2112 -2.8489 3.5214 37 1 4.0385 -1.0870 5.7884 38 1 5.8086 -0.9840 5.9454 39 1 3.7866 -0.1819 8.0480 40 1 5.5567 -0.0792 8.2042 41 1 3.3781 1.3548 10.4741 42 1 5.0252 0.6367 10.4587 43 1 5.3993 2.6491 11.7329 44 1 4.2281 3.5850 10.7572 45 1 6.6437 1.9599 8.2586 46 1 5.6764 3.3851 7.7947 47 1 4.1224 0.6070 0.5349 48 1 3.3319 0.2173 2.0848 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001189293697.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:57:03 Heat of formation + Delta-G solvation = -80.139295 kcal Electronic energy + Delta-G solvation = -28513.174668 eV Core-core repulsion = 24569.586406 eV Total energy + Delta-G solvation = -3943.588262 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.47968 -39.81466 -38.47935 -37.18913 -35.05433 -33.22408 -32.37753 -31.36863 -30.10458 -29.40672 -27.88511 -26.77940 -25.51217 -24.31558 -22.76269 -22.53455 -21.06389 -20.93915 -19.89612 -18.97631 -17.63471 -17.30893 -17.13021 -16.54685 -16.36819 -16.06014 -15.83471 -15.22494 -14.97767 -14.72908 -14.32353 -13.87999 -13.73871 -13.57569 -13.49561 -13.30229 -13.01150 -12.64805 -12.57706 -12.20948 -11.98586 -11.98321 -11.79980 -11.60455 -11.54560 -11.24813 -11.06805 -11.02809 -10.88984 -10.80323 -10.44326 -10.09660 -9.92674 -9.76405 -9.70146 -9.52573 -9.16264 -8.47390 -8.26353 -7.03265 -6.35535 -3.10285 2.64173 2.78714 3.53727 3.57413 3.61188 3.68614 3.75589 4.12088 4.34798 4.49977 4.52848 4.60099 4.66769 4.78898 4.84069 4.85769 4.89516 4.94694 4.97257 5.06035 5.10600 5.17440 5.24266 5.31402 5.34041 5.36485 5.46510 5.50594 5.51678 5.52565 5.64920 5.73894 5.80216 5.86154 5.90802 5.99259 6.06717 6.28128 6.47237 6.56332 6.66326 6.71022 6.82960 6.95748 7.64554 7.76729 8.33888 8.37113 9.06697 9.65917 10.29887 11.15740 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.014665 B = 0.003150 C = 0.002807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1908.827673 B = 8886.907497 C = 9971.088621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C -0.013 4.013 3 Si 1.055 2.945 4 H -0.286 1.286 5 H -0.293 1.293 6 H -0.299 1.299 7 C -0.343 4.343 8 H 0.079 0.921 9 N -0.606 5.606 10 C 0.146 3.854 11 C -0.110 4.110 12 H 0.105 0.895 13 C -0.123 4.123 14 C 0.098 3.902 15 N -0.607 5.607 16 C 0.527 3.473 17 O -0.513 6.513 18 C 0.053 3.947 19 O -0.360 6.360 20 C 0.071 3.929 21 C -0.121 4.121 22 H 0.097 0.903 23 C -0.149 4.149 24 C 0.052 3.948 25 O -0.388 6.388 26 C 0.060 3.940 27 C 0.133 3.867 28 H 0.086 0.914 29 C 0.105 3.895 30 H 0.263 0.737 31 H 0.026 0.974 32 H 0.039 0.961 33 H 0.073 0.927 34 H 0.086 0.914 35 H 0.072 0.928 36 H 0.075 0.925 37 H 0.080 0.920 38 H 0.077 0.923 39 H 0.057 0.943 40 H 0.054 0.946 41 H 0.087 0.913 42 H 0.081 0.919 43 H 0.085 0.915 44 H 0.062 0.938 45 H 0.071 0.929 46 H 0.076 0.924 47 H 0.039 0.961 48 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.063 -5.585 18.845 24.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.215 4.215 3 Si 0.888 3.112 4 H -0.213 1.213 5 H -0.221 1.221 6 H -0.227 1.227 7 C -0.469 4.469 8 H 0.097 0.903 9 N -0.334 5.334 10 C 0.020 3.980 11 C -0.130 4.130 12 H 0.123 0.877 13 C -0.161 4.161 14 C -0.025 4.025 15 N -0.343 5.343 16 C 0.314 3.686 17 O -0.387 6.387 18 C -0.027 4.027 19 O -0.279 6.279 20 C -0.005 4.005 21 C -0.140 4.140 22 H 0.116 0.884 23 C -0.187 4.187 24 C -0.025 4.025 25 O -0.307 6.307 26 C -0.017 4.017 27 C 0.030 3.970 28 H 0.104 0.896 29 C -0.020 4.020 30 H 0.073 0.927 31 H 0.043 0.957 32 H 0.057 0.943 33 H 0.092 0.908 34 H 0.104 0.896 35 H 0.091 0.909 36 H 0.093 0.907 37 H 0.098 0.902 38 H 0.095 0.905 39 H 0.075 0.925 40 H 0.072 0.928 41 H 0.106 0.894 42 H 0.099 0.901 43 H 0.103 0.897 44 H 0.080 0.920 45 H 0.090 0.910 46 H 0.094 0.906 47 H 0.057 0.943 48 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 13.892 -2.905 18.743 23.510 hybrid contribution -0.067 -2.199 -0.152 2.206 sum 13.825 -5.104 18.592 23.724 Atomic orbital electron populations 1.70938 1.06017 1.30085 1.47888 1.25602 0.95959 1.00882 0.99011 0.83984 0.73810 0.76345 0.77020 1.21269 1.22103 1.22674 1.19884 0.92854 0.98883 1.35316 0.90336 1.44507 1.20995 1.02617 1.65281 1.21329 0.87696 0.90501 0.98502 1.23474 0.98911 0.93360 0.97250 0.87705 1.22942 0.99622 0.99730 0.93833 1.22399 1.00969 0.80520 0.98614 1.48309 1.72857 1.06538 1.06597 1.19742 0.77327 0.85376 0.86123 1.90762 1.48111 1.17216 1.82569 1.22154 1.02122 0.88937 0.89518 1.88018 1.94510 1.29177 1.16145 1.22484 1.00530 0.96318 0.81213 1.22721 1.00147 0.96518 0.94606 0.88428 1.23268 1.02777 0.98945 0.93692 1.23345 0.90320 0.94880 0.93927 1.88406 1.46906 1.74162 1.21261 1.23160 0.96351 0.96855 0.85309 1.22155 0.98464 0.97372 0.79012 0.89562 1.21831 0.91428 0.92200 0.96576 0.92663 0.95687 0.94294 0.90823 0.89561 0.90939 0.90673 0.90201 0.90503 0.92488 0.92788 0.89429 0.90071 0.89690 0.91999 0.91030 0.90620 0.94342 0.93339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -29.19 13.70 55.49 0.76 -28.43 16 2 C -0.01 -0.39 5.44 -17.43 -0.09 -0.49 16 3 Si 1.06 28.71 24.64 -169.99 -4.19 24.52 16 4 H -0.29 -7.85 6.42 56.52 0.36 -7.48 16 5 H -0.29 -7.53 6.43 56.52 0.36 -7.17 16 6 H -0.30 -8.12 7.11 56.52 0.40 -7.71 16 7 C -0.34 -10.03 10.39 -15.06 -0.16 -10.18 16 8 H 0.08 2.38 8.06 -52.49 -0.42 1.95 16 9 N -0.61 -15.19 3.36 -171.89 -0.58 -15.77 16 10 C 0.15 2.80 6.45 -3.28 -0.02 2.77 16 11 C -0.11 -1.64 4.44 -87.03 -0.39 -2.03 16 12 H 0.10 1.39 8.14 -51.93 -0.42 0.97 16 13 C -0.12 -1.30 6.34 -24.01 -0.15 -1.45 16 14 C 0.10 1.13 6.23 -2.57 -0.02 1.12 16 15 N -0.61 -9.74 2.98 -162.40 -0.48 -10.22 16 16 C 0.53 9.16 7.47 -10.99 -0.08 9.08 16 17 O -0.51 -11.39 16.39 -14.36 -0.24 -11.62 16 18 C 0.05 0.65 5.41 36.01 0.19 0.85 16 19 O -0.36 -5.00 9.72 -55.14 -0.54 -5.54 16 20 C 0.07 0.67 5.25 37.16 0.20 0.87 16 21 C -0.12 -1.13 3.29 -88.67 -0.29 -1.43 16 22 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 23 C -0.15 -1.01 6.62 -24.48 -0.16 -1.17 16 24 C 0.05 0.41 7.78 38.18 0.30 0.70 16 25 O -0.39 -4.41 11.36 -35.23 -0.40 -4.81 16 26 C 0.06 0.65 7.26 37.88 0.27 0.92 16 27 C 0.13 2.41 3.56 -66.33 -0.24 2.17 16 28 H 0.09 1.50 8.14 -51.93 -0.42 1.07 16 29 C 0.11 2.50 4.40 -3.70 -0.02 2.49 16 30 H 0.26 8.27 8.73 -40.82 -0.36 7.91 16 31 H 0.03 0.47 6.56 -51.93 -0.34 0.13 16 32 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.09 0.77 8.09 -51.93 -0.42 0.35 16 35 H 0.07 0.59 7.45 -51.93 -0.39 0.20 16 36 H 0.08 0.94 7.23 -51.93 -0.38 0.57 16 37 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 38 H 0.08 0.69 7.84 -51.93 -0.41 0.29 16 39 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.05 0.41 8.07 -51.93 -0.42 -0.01 16 41 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.08 0.47 8.04 -51.93 -0.42 0.06 16 43 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 44 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.07 0.76 7.76 -51.93 -0.40 0.35 16 46 H 0.08 0.90 8.14 -51.92 -0.42 0.48 16 47 H 0.04 0.98 4.17 -51.93 -0.22 0.77 16 48 H 0.05 1.32 6.12 -51.93 -0.32 1.00 16 LS Contribution 370.12 15.07 5.58 5.58 Total: -1.00 -37.82 370.12 -8.74 -46.57 By element: Atomic # 1 Polarization: 3.51 SS G_CDS: -8.01 Total: -4.50 kcal Atomic # 6 Polarization: 4.88 SS G_CDS: -0.65 Total: 4.23 kcal Atomic # 7 Polarization: -54.12 SS G_CDS: -0.30 Total: -54.42 kcal Atomic # 8 Polarization: -20.80 SS G_CDS: -1.17 Total: -21.97 kcal Atomic # 14 Polarization: 28.71 SS G_CDS: -4.19 Total: 24.52 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -37.82 -8.74 -46.57 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001189293697.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.572 kcal (2) G-P(sol) polarization free energy of solvation -37.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds