Wall clock time and date at job start Tue Mar 31 2020 13:45:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 C 1.53002 * 109.47037 * 178.61916 * 3 2 1 5 5 N 1.46494 * 109.47037 * 179.97438 * 4 3 2 6 6 C 1.46499 * 120.00347 * 269.99887 * 5 4 3 7 7 C 1.50707 * 109.47259 * 270.00364 * 6 5 4 8 8 H 1.07997 * 119.99475 * 359.97438 * 7 6 5 9 9 C 1.37876 * 119.99927 * 179.97438 * 7 6 5 10 10 N 1.31512 * 120.00003 * 359.97438 * 9 7 6 11 11 Si 1.86797 * 119.99813 * 179.97438 * 9 7 6 12 12 H 1.48502 * 109.47122 * 89.99997 * 11 9 7 13 13 H 1.48494 * 109.47122 * 210.00015 * 11 9 7 14 14 H 1.48500 * 109.47404 * 330.00393 * 11 9 7 15 15 C 1.34779 * 119.99866 * 89.99981 * 5 4 3 16 16 S 1.71206 * 119.99845 * 179.97438 * 15 5 4 17 17 N 1.34771 * 120.00365 * 0.02562 * 15 5 4 18 18 C 1.46498 * 120.00412 * 180.02562 * 17 15 5 19 19 C 1.53004 * 109.47369 * 179.97438 * 18 17 15 20 20 N 1.46898 * 109.46850 * 180.02562 * 19 18 17 21 21 C 1.46845 * 111.00565 * 45.79157 * 20 19 18 22 22 C 1.53034 * 109.52676 * 185.84030 * 21 20 19 23 23 C 1.53126 * 109.27454 * 300.81918 * 22 21 20 24 24 C 1.53119 * 109.16048 * 57.65518 * 23 22 21 25 25 C 1.46850 * 110.99813 * 170.00223 * 20 19 18 26 26 H 1.09003 * 109.47064 * 58.62127 * 3 2 1 27 27 H 1.08997 * 109.47245 * 298.62148 * 3 2 1 28 28 H 1.08998 * 109.46934 * 59.99721 * 4 3 2 29 29 H 1.09005 * 109.46962 * 300.00220 * 4 3 2 30 30 H 1.08999 * 109.47049 * 29.99815 * 6 5 4 31 31 H 1.08997 * 109.47680 * 150.00096 * 6 5 4 32 32 H 0.97003 * 120.00169 * 179.97438 * 10 9 7 33 33 H 0.97007 * 119.99969 * 359.97438 * 17 15 5 34 34 H 1.09006 * 109.47054 * 59.99423 * 18 17 15 35 35 H 1.08999 * 109.46804 * 299.99831 * 18 17 15 36 36 H 1.08995 * 109.46637 * 59.99753 * 19 18 17 37 37 H 1.09001 * 109.46762 * 299.99710 * 19 18 17 38 38 H 1.08995 * 109.46315 * 65.81881 * 21 20 19 39 39 H 1.09005 * 109.45975 * 305.85394 * 21 20 19 40 40 H 1.08997 * 109.50792 * 180.88024 * 22 21 20 41 41 H 1.09006 * 109.50471 * 60.75677 * 22 21 20 42 42 H 1.08999 * 109.52028 * 177.55723 * 23 22 21 43 43 H 1.08993 * 109.52259 * 297.74866 * 23 22 21 44 44 H 1.09004 * 109.50440 * 62.28501 * 24 23 22 45 45 H 1.09003 * 109.50154 * 182.40625 * 24 23 22 46 46 H 1.09005 * 109.46186 * 54.13967 * 25 20 19 47 47 H 1.08998 * 109.46012 * 294.17361 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1173 1.4430 -0.0348 5 7 4.5823 1.4437 -0.0341 6 6 5.3143 1.4748 1.2345 7 6 5.5646 2.9059 1.6351 8 1 5.2139 3.7116 1.0072 9 6 6.2414 3.1865 2.8031 10 7 6.6680 2.2054 3.5678 11 14 6.5522 4.9604 3.2992 12 1 5.4215 5.4476 4.1295 13 1 7.8118 5.0421 4.0814 14 1 6.6704 5.8017 2.0813 15 6 5.2566 1.4157 -1.2007 16 16 6.9687 1.4171 -1.2000 17 7 4.5833 1.3876 -2.3679 18 6 5.3163 1.3566 -3.6359 19 6 4.3226 1.3280 -4.7990 20 7 5.0577 1.2963 -6.0704 21 6 6.1484 0.3143 -6.0234 22 6 6.9794 0.4110 -7.3049 23 6 6.0779 0.1431 -8.5133 24 6 4.9233 1.1488 -8.5118 25 6 4.1520 1.0306 -7.1954 26 1 2.9716 -0.5343 -0.8774 27 1 2.9716 -0.4914 0.9021 28 1 2.7537 1.9779 0.8425 29 1 2.7537 1.9351 -0.9369 30 1 4.7251 0.9793 2.0061 31 1 6.2670 0.9584 1.1171 32 1 7.1444 2.4028 4.3894 33 1 3.6133 1.3871 -2.3683 34 1 5.9428 0.4653 -3.6717 35 1 5.9433 2.2447 -3.7149 36 1 3.6959 2.2191 -4.7632 37 1 3.6960 0.4396 -4.7197 38 1 5.7306 -0.6887 -5.9364 39 1 6.7843 0.5186 -5.1620 40 1 7.7794 -0.3287 -7.2766 41 1 7.4089 1.4097 -7.3856 42 1 6.6561 0.2537 -9.4307 43 1 5.6791 -0.8694 -8.4528 44 1 5.3205 2.1590 -8.6115 45 1 4.2544 0.9362 -9.3458 46 1 3.3378 1.7553 -7.1851 47 1 3.7435 0.0243 -7.1029 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001200431497.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:45:51 Heat of formation + Delta-G solvation = 47.160756 kcal Electronic energy + Delta-G solvation = -25108.747826 eV Core-core repulsion = 21645.725331 eV Total energy + Delta-G solvation = -3463.022495 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.168 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.66596 -38.99719 -36.89105 -35.88527 -33.75162 -32.87056 -31.62224 -31.15141 -29.04369 -27.04146 -25.28854 -24.68072 -23.41320 -22.95589 -21.79387 -20.67998 -19.92789 -18.08374 -17.44716 -17.15335 -16.47694 -15.97304 -15.63737 -15.31354 -15.02195 -14.71742 -14.62716 -14.40738 -14.32256 -13.85372 -13.74100 -13.66812 -13.19362 -12.94743 -12.69488 -12.62148 -12.36432 -12.23057 -12.02870 -11.82627 -11.47034 -11.42578 -11.26684 -11.10727 -10.97690 -10.79191 -10.71372 -10.65353 -10.46443 -10.28070 -10.13692 -9.67301 -8.59850 -8.46575 -8.32508 -7.02308 -6.46034 -6.07332 -4.10587 2.05345 2.46646 2.60948 2.67077 3.16479 3.30863 3.39355 3.42365 3.49396 3.81374 4.05483 4.44154 4.48269 4.54125 4.63716 4.66115 4.71843 4.77780 4.91019 4.98768 5.10666 5.14587 5.21018 5.27051 5.29596 5.33537 5.43485 5.49007 5.57618 5.66441 5.69171 5.73044 5.81500 5.87420 5.90558 5.94588 6.12395 6.30905 6.54917 6.78310 6.81480 7.09379 7.36195 7.41309 7.47389 7.87114 7.89294 8.12077 8.87943 9.52757 11.01297 Molecular weight = 324.17amu Principal moments of inertia in cm(-1) A = 0.011658 B = 0.003188 C = 0.002680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2401.244542 B = 8780.993186 C =10446.944569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.436 5.436 2 C 0.214 3.786 3 C -0.048 4.048 4 C 0.101 3.899 5 N -0.543 5.543 6 C 0.238 3.762 7 C -0.520 4.520 8 H 0.056 0.944 9 C 0.068 3.932 10 N -0.890 5.890 11 Si 0.898 3.102 12 H -0.283 1.283 13 H -0.285 1.285 14 H -0.273 1.273 15 C 0.562 3.438 16 S -0.640 6.640 17 N -0.706 5.706 18 C 0.127 3.873 19 C 0.044 3.956 20 N -0.530 5.530 21 C 0.042 3.958 22 C -0.117 4.117 23 C -0.122 4.122 24 C -0.117 4.117 25 C 0.056 3.944 26 H 0.106 0.894 27 H 0.123 0.877 28 H 0.109 0.891 29 H 0.074 0.926 30 H 0.039 0.961 31 H 0.081 0.919 32 H 0.264 0.736 33 H 0.387 0.613 34 H 0.085 0.915 35 H 0.092 0.908 36 H 0.080 0.920 37 H 0.037 0.963 38 H 0.033 0.967 39 H 0.092 0.908 40 H 0.068 0.932 41 H 0.073 0.927 42 H 0.063 0.937 43 H 0.057 0.943 44 H 0.072 0.928 45 H 0.064 0.936 46 H 0.073 0.927 47 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.002 -5.640 -20.152 22.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.113 5.113 2 C -0.105 4.105 3 C -0.089 4.089 4 C -0.028 4.028 5 N -0.250 5.250 6 C 0.120 3.880 7 C -0.559 4.559 8 H 0.075 0.925 9 C -0.134 4.134 10 N -0.529 5.529 11 Si 0.725 3.275 12 H -0.209 1.209 13 H -0.210 1.210 14 H -0.198 1.198 15 C 0.204 3.796 16 S -0.511 6.511 17 N -0.341 5.341 18 C 0.002 3.998 19 C -0.085 4.085 20 N -0.255 5.255 21 C -0.085 4.085 22 C -0.155 4.155 23 C -0.160 4.160 24 C -0.154 4.154 25 C -0.072 4.072 26 H 0.124 0.876 27 H 0.141 0.859 28 H 0.127 0.873 29 H 0.092 0.908 30 H 0.057 0.943 31 H 0.099 0.901 32 H 0.074 0.926 33 H 0.224 0.776 34 H 0.103 0.897 35 H 0.110 0.890 36 H 0.099 0.901 37 H 0.055 0.945 38 H 0.051 0.949 39 H 0.111 0.889 40 H 0.086 0.914 41 H 0.091 0.909 42 H 0.081 0.919 43 H 0.076 0.924 44 H 0.091 0.909 45 H 0.083 0.917 46 H 0.092 0.908 47 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -7.264 -5.218 -20.018 21.925 hybrid contribution -1.178 0.216 0.521 1.306 sum -8.442 -5.002 -19.497 21.827 Atomic orbital electron populations 1.81235 1.12858 1.08162 1.09003 1.28948 0.94937 0.93474 0.93125 1.19797 0.81751 1.00489 1.06912 1.21579 0.82160 0.94160 1.04927 1.47776 1.04456 1.65696 1.07037 1.19992 0.93944 0.99237 0.74876 1.21125 1.37329 0.91190 1.06229 0.92529 1.24804 0.95033 0.97402 0.96209 1.69904 1.38042 1.31208 1.13720 0.86500 0.77633 0.84808 0.78519 1.20915 1.21039 1.19800 1.22180 0.95429 0.81076 0.80964 1.93238 0.89759 1.73630 1.94486 1.44907 1.08876 1.75596 1.04736 1.21653 0.93891 1.05162 0.79069 1.22270 0.95873 1.01292 0.89048 1.61900 1.11515 1.50032 1.02066 1.22330 0.93561 0.93018 0.99598 1.21589 0.97597 1.02699 0.93617 1.21596 0.97040 0.98881 0.98499 1.21579 0.97316 1.00514 0.96027 1.22092 0.94823 0.99434 0.90806 0.87562 0.85882 0.87287 0.90815 0.94347 0.90126 0.92636 0.77552 0.89660 0.89013 0.90140 0.94482 0.94882 0.88948 0.91382 0.90853 0.91867 0.92443 0.90930 0.91688 0.90803 0.94966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -5.91 18.54 42.15 0.78 -5.13 16 2 C 0.21 2.32 15.43 -20.76 -0.32 2.00 16 3 C -0.05 -0.44 6.03 -29.52 -0.18 -0.62 16 4 C 0.10 1.20 5.13 -4.04 -0.02 1.18 16 5 N -0.54 -9.28 2.46 -177.09 -0.43 -9.71 16 6 C 0.24 5.36 4.92 -5.19 -0.03 5.33 16 7 C -0.52 -13.44 9.39 -34.44 -0.32 -13.77 16 8 H 0.06 1.49 7.81 -52.49 -0.41 1.08 16 9 C 0.07 1.85 5.46 -17.82 -0.10 1.75 16 10 N -0.89 -25.05 13.29 55.43 0.74 -24.31 16 11 Si 0.90 21.28 29.54 -169.99 -5.02 16.26 16 12 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 13 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 14 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 15 C 0.56 9.77 7.70 -86.92 -0.67 9.10 16 16 S -0.64 -14.52 27.17 -107.50 -2.92 -17.44 16 17 N -0.71 -8.79 5.42 -62.03 -0.34 -9.13 16 18 C 0.13 1.48 4.38 -4.04 -0.02 1.46 16 19 C 0.04 0.39 5.39 -3.82 -0.02 0.37 16 20 N -0.53 -4.87 4.81 -234.67 -1.13 -6.00 16 21 C 0.04 0.39 4.85 -3.84 -0.02 0.37 16 22 C -0.12 -0.95 6.09 -26.65 -0.16 -1.11 16 23 C -0.12 -0.86 6.00 -26.60 -0.16 -1.02 16 24 C -0.12 -0.81 6.09 -26.65 -0.16 -0.97 16 25 C 0.06 0.43 5.42 -3.83 -0.02 0.41 16 26 H 0.11 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.12 1.14 8.14 -51.93 -0.42 0.72 16 28 H 0.11 1.40 8.07 -51.93 -0.42 0.98 16 29 H 0.07 0.71 6.36 -51.93 -0.33 0.38 16 30 H 0.04 0.86 8.07 -51.93 -0.42 0.44 16 31 H 0.08 2.11 6.58 -51.93 -0.34 1.76 16 32 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 33 H 0.39 3.67 6.20 -40.82 -0.25 3.42 16 34 H 0.09 1.07 6.06 -51.93 -0.31 0.76 16 35 H 0.09 1.29 7.99 -51.93 -0.41 0.88 16 36 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.04 0.30 8.08 -51.93 -0.42 -0.12 16 38 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 39 H 0.09 0.96 5.81 -51.93 -0.30 0.66 16 40 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 43 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 44 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 46 H 0.07 0.53 8.12 -51.93 -0.42 0.11 16 47 H 0.03 0.25 8.14 -51.93 -0.42 -0.18 16 LS Contribution 391.85 15.07 5.91 5.91 Total: -1.00 -32.76 391.85 -12.45 -45.21 By element: Atomic # 1 Polarization: 7.69 SS G_CDS: -7.83 Total: -0.14 kcal Atomic # 6 Polarization: 6.68 SS G_CDS: -2.20 Total: 4.49 kcal Atomic # 7 Polarization: -53.90 SS G_CDS: -0.38 Total: -54.28 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Atomic # 16 Polarization: -14.52 SS G_CDS: -2.92 Total: -17.44 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -32.76 -12.45 -45.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200431497.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.369 kcal (2) G-P(sol) polarization free energy of solvation -32.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.208 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds