Wall clock time and date at job start Tue Mar 31 2020 13:56:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 119.99950 * 2 1 4 4 H 1.48501 * 109.46758 * 90.00140 * 3 2 1 5 5 H 1.48499 * 109.47026 * 209.99987 * 3 2 1 6 6 H 1.48496 * 109.47474 * 330.00023 * 3 2 1 7 7 C 1.38811 * 119.99540 * 180.27867 * 2 1 3 8 8 H 1.08001 * 119.99999 * 359.71854 * 7 2 1 9 9 N 1.36936 * 119.99842 * 179.72505 * 7 2 1 10 10 C 1.46493 * 120.00314 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47400 * 179.97438 * 10 9 7 12 12 H 1.09003 * 109.46823 * 59.99869 * 11 10 9 13 13 C 1.54803 * 109.47241 * 179.97438 * 11 10 9 14 14 N 1.45121 * 109.54291 * 187.89111 * 13 11 10 15 15 C 1.34771 * 118.76017 * 90.70327 * 14 13 11 16 16 O 1.21282 * 120.00079 * 0.02562 * 15 14 13 17 17 C 1.50703 * 120.00100 * 180.02562 * 15 14 13 18 18 C 1.50705 * 109.47212 * 180.02562 * 17 15 14 19 19 C 1.29982 * 118.74711 * 94.99902 * 18 17 15 20 20 C 1.50228 * 122.86560 * 180.38650 * 19 18 17 21 21 O 1.42906 * 110.13462 * 344.40091 * 20 19 18 22 22 C 1.43302 * 113.01678 * 50.18318 * 21 20 19 23 23 C 1.50391 * 118.73537 * 274.72816 * 18 17 15 24 24 C 1.47509 * 122.48331 * 270.71074 * 14 13 11 25 25 C 1.53573 * 111.02801 * 41.62065 * 24 14 13 26 26 C 1.51543 * 109.58098 * 39.97825 * 25 24 14 27 27 O 1.38012 * 109.46845 * 300.00171 * 11 10 9 28 28 H 0.96999 * 119.99889 * 359.97438 * 1 2 3 29 29 H 0.97000 * 119.99646 * 359.97438 * 9 7 2 30 30 H 1.09004 * 109.46794 * 299.99871 * 10 9 7 31 31 H 1.09000 * 109.47559 * 59.99394 * 10 9 7 32 32 H 1.09007 * 109.45774 * 307.91159 * 13 11 10 33 33 H 1.08997 * 109.46354 * 67.86688 * 13 11 10 34 34 H 1.09001 * 109.46993 * 300.00328 * 17 15 14 35 35 H 1.08994 * 109.47197 * 59.99970 * 17 15 14 36 36 H 1.07998 * 118.56156 * 0.40840 * 19 18 17 37 37 H 1.09001 * 109.35945 * 104.60183 * 20 19 18 38 38 H 1.08996 * 109.36036 * 224.19576 * 20 19 18 39 39 H 1.08997 * 109.68653 * 51.51955 * 22 21 20 40 40 H 1.09001 * 109.67951 * 172.07347 * 22 21 20 41 41 H 1.08996 * 109.44850 * 283.42854 * 23 18 17 42 42 H 1.08991 * 109.45497 * 43.36301 * 23 18 17 43 43 H 1.09004 * 109.16479 * 281.22575 * 24 14 13 44 44 H 1.08999 * 109.12578 * 161.99390 * 24 14 13 45 45 H 1.09002 * 109.45519 * 279.94737 * 25 24 14 46 46 H 1.08994 * 109.43673 * 160.00314 * 25 24 14 47 47 H 1.08999 * 109.58353 * 148.81421 * 26 25 24 48 48 H 1.09003 * 109.58547 * 28.38287 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 1.4001 5 1 3.5478 1.4402 -0.7000 6 1 1.4478 2.6527 -0.7000 7 6 2.0102 -1.2022 -0.0058 8 1 1.4701 -2.1375 -0.0058 9 7 3.3795 -1.2022 -0.0115 10 6 4.1120 -2.4709 -0.0183 11 6 5.6162 -2.1914 -0.0244 12 1 5.8836 -1.6222 0.8660 13 6 6.3902 -3.5320 -0.0308 14 7 7.8069 -3.2755 0.1512 15 6 8.3074 -3.2589 1.4024 16 8 7.5771 -3.4565 2.3503 17 6 9.7745 -2.9947 1.6238 18 6 10.0743 -3.0308 3.1002 19 6 10.5052 -4.1398 3.6237 20 6 10.8243 -4.2816 5.0848 21 8 10.9362 -2.9925 5.6913 22 6 9.8232 -2.1379 5.4004 23 6 9.8693 -1.7805 3.9104 24 6 8.7199 -3.0322 -0.9816 25 6 8.0665 -2.1195 -2.0297 26 6 7.2839 -1.0248 -1.3327 27 8 5.9445 -1.4646 -1.1508 28 1 -0.4850 0.8400 0.0004 29 1 3.8645 -0.3622 -0.0119 30 1 3.8524 -3.0450 0.8712 31 1 3.8450 -3.0400 -0.9087 32 1 6.0284 -4.1641 0.7803 33 1 6.2322 -4.0380 -0.9832 34 1 10.3620 -3.7591 1.1152 35 1 10.0313 -2.0136 1.2244 36 1 10.6401 -4.9964 2.9800 37 1 10.0297 -4.8440 5.5753 38 1 11.7666 -4.8175 5.1985 39 1 8.8923 -2.6569 5.6285 40 1 9.8929 -1.2285 5.9972 41 1 10.6911 -1.0890 3.7249 42 1 8.9286 -1.3115 3.6224 43 1 8.9756 -3.9846 -1.4460 44 1 9.6294 -2.5587 -0.6119 45 1 7.3924 -2.7070 -2.6530 46 1 8.8401 -1.6718 -2.6535 47 1 7.2924 -0.1231 -1.9451 48 1 7.7343 -0.8146 -0.3626 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001201327096.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:56:16 Heat of formation + Delta-G solvation = -84.590558 kcal Electronic energy + Delta-G solvation = -28674.871322 eV Core-core repulsion = 24731.090039 eV Total energy + Delta-G solvation = -3943.781283 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.85345 -39.63952 -38.53571 -35.80819 -35.07165 -34.72029 -32.92637 -31.35883 -31.15990 -30.28698 -28.64416 -26.82576 -25.47363 -24.43551 -23.83735 -22.31246 -21.77984 -21.05495 -19.32115 -18.30735 -17.72670 -17.50708 -16.91082 -16.68409 -16.52578 -16.05533 -15.93346 -15.33272 -15.13981 -14.58932 -14.34498 -14.26417 -13.80292 -13.77396 -13.48332 -13.24263 -13.04683 -12.90889 -12.68625 -12.55181 -12.52298 -12.27472 -12.11255 -11.86080 -11.57878 -11.50068 -11.22396 -10.95248 -10.83492 -10.82378 -10.39122 -10.10092 -9.99385 -9.89188 -9.55366 -9.52988 -9.12260 -8.84702 -8.68676 -7.15618 -5.70540 -3.04910 1.74644 2.42108 2.80975 3.43829 3.48743 3.50432 3.60482 3.79980 4.25424 4.30938 4.37572 4.47118 4.58341 4.66560 4.68242 4.79429 4.91857 5.01928 5.02967 5.04752 5.09965 5.18775 5.21052 5.22384 5.30497 5.32465 5.37985 5.47184 5.49244 5.54581 5.59454 5.67012 5.69849 5.79396 5.85053 5.94753 6.00115 6.13956 6.38516 6.51291 6.56440 6.67658 6.84307 7.09312 7.83433 7.98871 8.05651 8.48592 9.28383 10.00881 10.21851 11.47996 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.013859 B = 0.003205 C = 0.002875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2019.862144 B = 8733.712111 C = 9737.813309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.004 3.996 3 Si 0.883 3.117 4 H -0.285 1.285 5 H -0.274 1.274 6 H -0.291 1.291 7 C -0.241 4.241 8 H 0.090 0.910 9 N -0.749 5.749 10 C 0.171 3.829 11 C 0.085 3.915 12 H 0.050 0.950 13 C 0.082 3.918 14 N -0.612 5.612 15 C 0.508 3.492 16 O -0.524 6.524 17 C -0.107 4.107 18 C -0.089 4.089 19 C -0.190 4.190 20 C 0.092 3.908 21 O -0.382 6.382 22 C 0.060 3.940 23 C -0.117 4.117 24 C 0.105 3.895 25 C -0.167 4.167 26 C 0.072 3.928 27 O -0.371 6.371 28 H 0.259 0.741 29 H 0.364 0.636 30 H 0.043 0.957 31 H 0.034 0.966 32 H 0.095 0.905 33 H 0.084 0.916 34 H 0.098 0.902 35 H 0.100 0.900 36 H 0.114 0.886 37 H 0.064 0.936 38 H 0.101 0.899 39 H 0.060 0.940 40 H 0.097 0.903 41 H 0.081 0.919 42 H 0.085 0.915 43 H 0.068 0.932 44 H 0.082 0.918 45 H 0.084 0.916 46 H 0.086 0.914 47 H 0.089 0.911 48 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.458 -7.719 1.737 29.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.192 4.192 3 Si 0.713 3.287 4 H -0.212 1.212 5 H -0.200 1.200 6 H -0.218 1.218 7 C -0.371 4.371 8 H 0.108 0.892 9 N -0.395 5.395 10 C 0.043 3.957 11 C 0.025 3.975 12 H 0.068 0.932 13 C -0.042 4.042 14 N -0.346 5.346 15 C 0.295 3.705 16 O -0.399 6.399 17 C -0.147 4.147 18 C -0.090 4.090 19 C -0.208 4.208 20 C 0.016 3.984 21 O -0.300 6.300 22 C -0.017 4.017 23 C -0.154 4.154 24 C -0.018 4.018 25 C -0.205 4.205 26 C -0.004 4.004 27 O -0.289 6.289 28 H 0.069 0.931 29 H 0.197 0.803 30 H 0.061 0.939 31 H 0.052 0.948 32 H 0.113 0.887 33 H 0.103 0.897 34 H 0.117 0.883 35 H 0.118 0.882 36 H 0.132 0.868 37 H 0.082 0.918 38 H 0.118 0.882 39 H 0.078 0.922 40 H 0.116 0.884 41 H 0.100 0.900 42 H 0.103 0.897 43 H 0.087 0.913 44 H 0.100 0.900 45 H 0.102 0.898 46 H 0.104 0.896 47 H 0.107 0.893 48 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 27.847 -7.833 2.212 29.012 hybrid contribution 0.592 0.996 -0.331 1.205 sum 28.439 -6.837 1.881 29.310 Atomic orbital electron populations 1.69708 1.05083 1.25752 1.57903 1.24643 0.95223 0.97189 1.02133 0.86540 0.79484 0.84920 0.77724 1.21213 1.19981 1.21778 1.19066 0.80567 0.94774 1.42645 0.89202 1.42551 1.03893 1.02089 1.90964 1.20592 0.85628 0.90153 0.99340 1.22327 0.96418 0.90667 0.88089 0.93202 1.22387 0.79234 0.98982 1.03567 1.47977 1.09210 1.71226 1.06150 1.20649 0.90107 0.77000 0.82714 1.90744 1.60651 1.47874 1.40643 1.20871 0.93978 1.04382 0.95472 1.20405 0.98709 0.95891 0.93947 1.22667 1.02404 0.97925 0.97851 1.21377 1.02061 0.85466 0.89482 1.88096 1.44224 1.24937 1.72767 1.22681 0.89654 0.94709 0.94648 1.21067 1.03057 0.95856 0.95388 1.22017 0.92368 0.99873 0.87528 1.22506 1.01018 0.98560 0.98458 1.22132 0.83005 0.96028 0.99274 1.86430 1.27094 1.71823 1.43541 0.93134 0.80282 0.93902 0.94768 0.88710 0.89733 0.88338 0.88224 0.86825 0.91848 0.88154 0.92196 0.88449 0.90045 0.89698 0.91323 0.89956 0.89764 0.89596 0.89296 0.93577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -30.24 13.97 55.49 0.78 -29.47 16 2 C 0.00 0.11 5.50 -17.43 -0.10 0.01 16 3 Si 0.88 23.00 27.74 -169.99 -4.72 18.29 16 4 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 5 H -0.27 -6.81 6.51 56.52 0.37 -6.45 16 6 H -0.29 -7.60 7.11 56.52 0.40 -7.20 16 7 C -0.24 -7.11 10.47 -15.06 -0.16 -7.27 16 8 H 0.09 2.80 8.06 -52.49 -0.42 2.38 16 9 N -0.75 -18.98 5.29 -59.91 -0.32 -19.30 16 10 C 0.17 3.50 5.95 -4.05 -0.02 3.47 16 11 C 0.09 1.43 2.73 -25.78 -0.07 1.36 16 12 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 13 C 0.08 1.10 4.86 -3.83 -0.02 1.08 16 14 N -0.61 -6.73 2.19 -172.47 -0.38 -7.11 16 15 C 0.51 6.10 7.62 -10.99 -0.08 6.02 16 16 O -0.52 -8.48 15.46 5.56 0.09 -8.40 16 17 C -0.11 -0.89 4.11 -29.03 -0.12 -1.01 16 18 C -0.09 -0.87 4.40 -100.93 -0.44 -1.32 16 19 C -0.19 -1.76 9.54 -35.97 -0.34 -2.10 16 20 C 0.09 0.82 7.04 35.78 0.25 1.07 16 21 O -0.38 -4.10 10.84 -35.23 -0.38 -4.48 16 22 C 0.06 0.59 6.90 37.31 0.26 0.84 16 23 C -0.12 -1.13 6.10 -27.88 -0.17 -1.30 16 24 C 0.10 0.77 6.00 -3.19 -0.02 0.75 16 25 C -0.17 -1.39 5.79 -27.17 -0.16 -1.54 16 26 C 0.07 0.85 6.37 36.42 0.23 1.08 16 27 O -0.37 -6.14 9.18 -26.53 -0.24 -6.38 16 28 H 0.26 7.94 8.31 -40.82 -0.34 7.60 16 29 H 0.36 9.18 5.39 -40.82 -0.22 8.96 16 30 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.09 1.38 7.27 -51.92 -0.38 1.00 16 33 H 0.08 1.03 8.11 -51.93 -0.42 0.61 16 34 H 0.10 0.60 7.76 -51.93 -0.40 0.20 16 35 H 0.10 0.66 7.40 -51.93 -0.38 0.27 16 36 H 0.11 0.89 7.83 -52.49 -0.41 0.47 16 37 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.06 0.63 8.10 -51.93 -0.42 0.21 16 40 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 41 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 43 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 44 H 0.08 0.43 5.87 -51.93 -0.30 0.12 16 45 H 0.08 0.80 8.01 -51.93 -0.42 0.39 16 46 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 47 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 48 H 0.05 0.53 7.40 -51.93 -0.38 0.15 16 LS Contribution 377.88 15.07 5.69 5.69 Total: -1.00 -36.50 377.88 -8.43 -44.93 By element: Atomic # 1 Polarization: 13.06 SS G_CDS: -7.99 Total: 5.07 kcal Atomic # 6 Polarization: 2.12 SS G_CDS: -0.96 Total: 1.16 kcal Atomic # 7 Polarization: -55.96 SS G_CDS: 0.08 Total: -55.88 kcal Atomic # 8 Polarization: -18.72 SS G_CDS: -0.54 Total: -19.26 kcal Atomic # 14 Polarization: 23.00 SS G_CDS: -4.72 Total: 18.29 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -36.50 -8.43 -44.93 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201327096.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.660 kcal (2) G-P(sol) polarization free energy of solvation -36.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds