Wall clock time and date at job start Tue Mar 31 2020 13:56:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 119.99950 * 2 1 4 4 H 1.48501 * 109.46758 * 90.00140 * 3 2 1 5 5 H 1.48499 * 109.47026 * 209.99987 * 3 2 1 6 6 H 1.48496 * 109.47474 * 330.00023 * 3 2 1 7 7 C 1.38811 * 119.99540 * 180.27867 * 2 1 3 8 8 H 1.08001 * 119.99999 * 359.71854 * 7 2 1 9 9 N 1.36936 * 119.99842 * 179.72505 * 7 2 1 10 10 C 1.46493 * 120.00314 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47400 * 179.97438 * 10 9 7 12 12 H 1.09003 * 109.46823 * 59.99869 * 11 10 9 13 13 C 1.54803 * 109.47241 * 179.97438 * 11 10 9 14 14 N 1.45121 * 109.54291 * 187.89111 * 13 11 10 15 15 C 1.34771 * 118.76017 * 90.70327 * 14 13 11 16 16 O 1.21282 * 120.00079 * 0.02562 * 15 14 13 17 17 C 1.50703 * 120.00100 * 180.02562 * 15 14 13 18 18 C 1.50705 * 109.47212 * 180.02562 * 17 15 14 19 19 C 1.29982 * 118.74711 * 94.99902 * 18 17 15 20 20 C 1.50228 * 122.86560 * 180.38650 * 19 18 17 21 21 O 1.42906 * 110.13462 * 344.40091 * 20 19 18 22 22 C 1.43302 * 113.01678 * 50.18318 * 21 20 19 23 23 C 1.50391 * 118.73537 * 274.72816 * 18 17 15 24 24 C 1.47509 * 122.48331 * 270.71074 * 14 13 11 25 25 C 1.53573 * 111.02801 * 41.62065 * 24 14 13 26 26 C 1.51543 * 109.58098 * 39.97825 * 25 24 14 27 27 O 1.38012 * 109.46845 * 300.00171 * 11 10 9 28 28 H 0.96999 * 119.99889 * 359.97438 * 1 2 3 29 29 H 0.97000 * 119.99646 * 359.97438 * 9 7 2 30 30 H 1.09004 * 109.46794 * 299.99871 * 10 9 7 31 31 H 1.09000 * 109.47559 * 59.99394 * 10 9 7 32 32 H 1.09007 * 109.45774 * 307.91159 * 13 11 10 33 33 H 1.08997 * 109.46354 * 67.86688 * 13 11 10 34 34 H 1.09001 * 109.46993 * 300.00328 * 17 15 14 35 35 H 1.08994 * 109.47197 * 59.99970 * 17 15 14 36 36 H 1.07998 * 118.56156 * 0.40840 * 19 18 17 37 37 H 1.09001 * 109.35945 * 104.60183 * 20 19 18 38 38 H 1.08996 * 109.36036 * 224.19576 * 20 19 18 39 39 H 1.08997 * 109.68653 * 51.51955 * 22 21 20 40 40 H 1.09001 * 109.67951 * 172.07347 * 22 21 20 41 41 H 1.08996 * 109.44850 * 283.42854 * 23 18 17 42 42 H 1.08991 * 109.45497 * 43.36301 * 23 18 17 43 43 H 1.09004 * 109.16479 * 281.22575 * 24 14 13 44 44 H 1.08999 * 109.12578 * 161.99390 * 24 14 13 45 45 H 1.09002 * 109.45519 * 279.94737 * 25 24 14 46 46 H 1.08994 * 109.43673 * 160.00314 * 25 24 14 47 47 H 1.08999 * 109.58353 * 148.81421 * 26 25 24 48 48 H 1.09003 * 109.58547 * 28.38287 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 1.4001 5 1 3.5478 1.4402 -0.7000 6 1 1.4478 2.6527 -0.7000 7 6 2.0102 -1.2022 -0.0058 8 1 1.4701 -2.1375 -0.0058 9 7 3.3795 -1.2022 -0.0115 10 6 4.1120 -2.4709 -0.0183 11 6 5.6162 -2.1914 -0.0244 12 1 5.8836 -1.6222 0.8660 13 6 6.3902 -3.5320 -0.0308 14 7 7.8069 -3.2755 0.1512 15 6 8.3074 -3.2589 1.4024 16 8 7.5771 -3.4565 2.3503 17 6 9.7745 -2.9947 1.6238 18 6 10.0743 -3.0308 3.1002 19 6 10.5052 -4.1398 3.6237 20 6 10.8243 -4.2816 5.0848 21 8 10.9362 -2.9925 5.6913 22 6 9.8232 -2.1379 5.4004 23 6 9.8693 -1.7805 3.9104 24 6 8.7199 -3.0322 -0.9816 25 6 8.0665 -2.1195 -2.0297 26 6 7.2839 -1.0248 -1.3327 27 8 5.9445 -1.4646 -1.1508 28 1 -0.4850 0.8400 0.0004 29 1 3.8645 -0.3622 -0.0119 30 1 3.8524 -3.0450 0.8712 31 1 3.8450 -3.0400 -0.9087 32 1 6.0284 -4.1641 0.7803 33 1 6.2322 -4.0380 -0.9832 34 1 10.3620 -3.7591 1.1152 35 1 10.0313 -2.0136 1.2244 36 1 10.6401 -4.9964 2.9800 37 1 10.0297 -4.8440 5.5753 38 1 11.7666 -4.8175 5.1985 39 1 8.8923 -2.6569 5.6285 40 1 9.8929 -1.2285 5.9972 41 1 10.6911 -1.0890 3.7249 42 1 8.9286 -1.3115 3.6224 43 1 8.9756 -3.9846 -1.4460 44 1 9.6294 -2.5587 -0.6119 45 1 7.3924 -2.7070 -2.6530 46 1 8.8401 -1.6718 -2.6535 47 1 7.2924 -0.1231 -1.9451 48 1 7.7343 -0.8146 -0.3626 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001201327096.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:56:15 Heat of formation + Delta-G solvation = -110.454248 kcal Electronic energy + Delta-G solvation = -28675.992856 eV Core-core repulsion = 24731.090039 eV Total energy + Delta-G solvation = -3944.902817 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.77667 -40.45642 -39.56544 -37.03798 -36.31677 -35.76539 -34.34859 -33.01185 -32.06244 -31.22799 -29.85623 -27.79891 -26.70858 -25.35851 -24.72783 -23.87610 -22.86225 -22.35801 -20.17150 -19.83020 -19.01628 -18.43503 -17.86032 -17.65772 -17.39624 -17.01278 -16.92273 -16.43889 -16.12314 -16.07170 -15.68453 -15.17355 -15.00107 -14.86745 -14.59387 -14.56946 -14.06927 -13.93531 -13.83174 -13.71378 -13.54080 -13.35680 -13.19098 -12.93509 -12.87168 -12.60770 -12.37061 -12.26617 -12.13309 -12.00282 -11.84458 -11.57410 -11.48718 -11.05458 -10.96986 -10.64470 -10.59906 -9.81319 -9.66899 -9.34396 -8.05843 -5.39178 1.04981 1.34481 1.37739 1.46415 1.55444 2.00118 2.45994 2.66403 2.89985 3.25749 3.45112 3.54419 3.64832 3.72944 3.83125 3.95164 3.99532 4.01788 4.07403 4.19930 4.23967 4.27300 4.36452 4.42942 4.45651 4.48126 4.49490 4.55526 4.65772 4.67437 4.71848 4.76395 4.82169 4.85512 4.89249 4.95927 5.04269 5.11209 5.18907 5.46656 5.52018 5.70233 5.82795 6.12241 6.17623 6.27568 6.69217 7.03551 7.12440 7.79165 7.99787 9.15693 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.013859 B = 0.003205 C = 0.002875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2019.862144 B = 8733.712111 C = 9737.813309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.983 5.983 2 C -0.062 4.062 3 Si 0.956 3.044 4 H -0.279 1.279 5 H -0.255 1.255 6 H -0.289 1.289 7 C -0.237 4.237 8 H 0.058 0.942 9 N -0.753 5.753 10 C 0.165 3.835 11 C 0.103 3.897 12 H 0.028 0.972 13 C 0.094 3.906 14 N -0.610 5.610 15 C 0.502 3.498 16 O -0.576 6.576 17 C -0.097 4.097 18 C -0.109 4.109 19 C -0.192 4.192 20 C 0.084 3.916 21 O -0.395 6.395 22 C 0.056 3.944 23 C -0.116 4.116 24 C 0.099 3.901 25 C -0.159 4.159 26 C 0.062 3.938 27 O -0.399 6.399 28 H 0.259 0.741 29 H 0.366 0.634 30 H 0.038 0.962 31 H 0.036 0.964 32 H 0.077 0.923 33 H 0.100 0.900 34 H 0.130 0.870 35 H 0.123 0.877 36 H 0.130 0.870 37 H 0.060 0.940 38 H 0.123 0.877 39 H 0.043 0.957 40 H 0.111 0.889 41 H 0.096 0.904 42 H 0.069 0.931 43 H 0.092 0.908 44 H 0.114 0.886 45 H 0.072 0.928 46 H 0.121 0.879 47 H 0.098 0.902 48 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 32.556 -7.349 0.370 33.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.633 5.633 2 C -0.254 4.254 3 Si 0.782 3.218 4 H -0.205 1.205 5 H -0.180 1.180 6 H -0.216 1.216 7 C -0.368 4.368 8 H 0.077 0.923 9 N -0.398 5.398 10 C 0.038 3.962 11 C 0.043 3.957 12 H 0.046 0.954 13 C -0.031 4.031 14 N -0.342 5.342 15 C 0.292 3.708 16 O -0.455 6.455 17 C -0.136 4.136 18 C -0.110 4.110 19 C -0.211 4.211 20 C 0.008 3.992 21 O -0.314 6.314 22 C -0.020 4.020 23 C -0.153 4.153 24 C -0.022 4.022 25 C -0.197 4.197 26 C -0.014 4.014 27 O -0.318 6.318 28 H 0.068 0.932 29 H 0.199 0.801 30 H 0.056 0.944 31 H 0.054 0.946 32 H 0.096 0.904 33 H 0.118 0.882 34 H 0.148 0.852 35 H 0.141 0.859 36 H 0.148 0.852 37 H 0.078 0.922 38 H 0.141 0.859 39 H 0.061 0.939 40 H 0.129 0.871 41 H 0.114 0.886 42 H 0.087 0.913 43 H 0.110 0.890 44 H 0.132 0.868 45 H 0.091 0.909 46 H 0.139 0.861 47 H 0.116 0.884 48 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 32.018 -7.487 0.810 32.892 hybrid contribution -0.692 0.792 0.095 1.056 sum 31.326 -6.695 0.905 32.046 Atomic orbital electron populations 1.69881 1.07002 1.26781 1.59644 1.25491 0.96169 1.01236 1.02496 0.85392 0.78676 0.79638 0.78050 1.20550 1.17975 1.21570 1.19066 0.82494 0.93718 1.41489 0.92349 1.42553 1.02512 1.03919 1.90840 1.20736 0.88354 0.88191 0.98923 1.21898 0.93945 0.92370 0.87521 0.95375 1.22048 0.80829 0.96590 1.03635 1.48084 1.08358 1.70526 1.07250 1.21383 0.91485 0.75755 0.82173 1.90728 1.62222 1.50253 1.42333 1.20905 0.91174 1.06685 0.94885 1.20623 0.99286 0.96026 0.95062 1.22892 1.01817 0.98296 0.98051 1.21588 1.03200 0.84890 0.89501 1.88071 1.44384 1.25726 1.73242 1.22729 0.88829 0.95029 0.95421 1.21048 1.02743 0.96413 0.95102 1.22371 0.92271 1.01275 0.86234 1.22442 1.01262 0.97414 0.98534 1.22465 0.81192 0.97754 1.00000 1.86352 1.30373 1.72172 1.42914 0.93194 0.80075 0.94418 0.94647 0.90425 0.88222 0.85201 0.85864 0.85187 0.92215 0.85906 0.93889 0.87102 0.88574 0.91273 0.88987 0.86816 0.90949 0.86074 0.88445 0.93437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -65.16 13.97 21.65 0.30 -64.86 16 2 C -0.06 -3.86 5.50 84.86 0.47 -3.39 16 3 Si 0.96 47.94 27.74 68.60 1.90 49.84 16 4 H -0.28 -13.67 7.11 99.48 0.71 -12.96 16 5 H -0.25 -11.86 6.51 99.48 0.65 -11.21 16 6 H -0.29 -14.36 7.11 99.48 0.71 -13.65 16 7 C -0.24 -14.39 10.47 84.03 0.88 -13.51 16 8 H 0.06 3.83 8.06 -2.91 -0.02 3.81 16 9 N -0.75 -38.63 5.29 -343.47 -1.82 -40.45 16 10 C 0.16 6.91 5.95 86.38 0.51 7.42 16 11 C 0.10 3.44 2.73 31.21 0.09 3.52 16 12 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 13 C 0.09 2.44 4.86 87.25 0.42 2.86 16 14 N -0.61 -11.89 2.19 -817.96 -1.79 -13.69 16 15 C 0.50 11.13 7.62 87.66 0.67 11.80 16 16 O -0.58 -18.73 15.46 -3.04 -0.05 -18.78 16 17 C -0.10 -1.28 4.11 29.10 0.12 -1.16 16 18 C -0.11 -1.92 4.40 -15.53 -0.07 -1.99 16 19 C -0.19 -3.17 9.54 26.55 0.25 -2.91 16 20 C 0.08 1.39 7.04 71.09 0.50 1.89 16 21 O -0.40 -8.16 10.84 -148.98 -1.62 -9.78 16 22 C 0.06 1.10 6.90 72.08 0.50 1.60 16 23 C -0.12 -2.13 6.10 29.85 0.18 -1.94 16 24 C 0.10 1.00 6.00 86.38 0.52 1.52 16 25 C -0.16 -1.97 5.79 30.31 0.18 -1.80 16 26 C 0.06 1.28 6.37 71.50 0.46 1.74 16 27 O -0.40 -12.71 9.18 -117.83 -1.08 -13.79 16 28 H 0.26 16.26 8.31 -92.71 -0.77 15.49 16 29 H 0.37 18.32 5.39 -92.71 -0.50 17.82 16 30 H 0.04 1.62 8.14 -2.38 -0.02 1.60 16 31 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.08 2.29 7.27 -2.38 -0.02 2.28 16 33 H 0.10 2.27 8.11 -2.39 -0.02 2.25 16 34 H 0.13 0.91 7.76 -2.39 -0.02 0.89 16 35 H 0.12 1.05 7.40 -2.39 -0.02 1.03 16 36 H 0.13 1.64 7.83 -2.91 -0.02 1.62 16 37 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 38 H 0.12 1.40 8.14 -2.39 -0.02 1.38 16 39 H 0.04 0.95 8.10 -2.39 -0.02 0.93 16 40 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 41 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 42 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 43 H 0.09 0.60 8.14 -2.39 -0.02 0.59 16 44 H 0.11 0.48 5.87 -2.39 -0.01 0.47 16 45 H 0.07 1.13 8.01 -2.39 -0.02 1.11 16 46 H 0.12 0.72 8.14 -2.39 -0.02 0.70 16 47 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 48 H 0.05 0.97 7.40 -2.39 -0.02 0.95 16 Total: -1.00 -82.79 377.88 1.91 -80.88 By element: Atomic # 1 Polarization: 24.60 SS G_CDS: 0.39 Total: 24.99 kcal Atomic # 6 Polarization: -0.04 SS G_CDS: 5.67 Total: 5.63 kcal Atomic # 7 Polarization: -115.68 SS G_CDS: -3.31 Total: -118.99 kcal Atomic # 8 Polarization: -39.61 SS G_CDS: -2.74 Total: -42.35 kcal Atomic # 14 Polarization: 47.94 SS G_CDS: 1.90 Total: 49.84 kcal Total: -82.79 1.91 -80.88 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201327096.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.575 kcal (2) G-P(sol) polarization free energy of solvation -82.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds