Wall clock time and date at job start Tue Mar 31 2020 15:15:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50699 * 120.00290 * 2 1 4 4 C 1.52999 * 109.47116 * 125.00310 * 3 2 1 5 5 C 1.50693 * 109.61319 * 300.21848 * 4 3 2 6 6 O 1.21288 * 120.00317 * 239.78226 * 5 4 3 7 7 N 1.34779 * 120.00177 * 59.78508 * 5 4 3 8 8 C 1.46505 * 120.00383 * 179.97438 * 7 5 4 9 9 H 1.09001 * 110.88183 * 34.29206 * 8 7 5 10 10 C 1.54904 * 111.00208 * 270.41727 * 8 7 5 11 11 N 1.47466 * 104.80953 * 204.94844 * 10 8 7 12 12 C 1.36942 * 125.62900 * 204.04354 * 11 10 8 13 13 H 1.08001 * 119.99638 * 0.02562 * 12 11 10 14 14 C 1.38819 * 119.99905 * 179.97438 * 12 11 10 15 15 N 1.31616 * 119.99881 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 119.99687 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47255 * 90.00127 * 16 14 12 18 18 H 1.48504 * 109.46949 * 210.00447 * 16 14 12 19 19 H 1.48498 * 109.47336 * 330.00106 * 16 14 12 20 20 C 1.47022 * 108.72547 * 24.07024 * 11 10 8 21 21 C 1.54335 * 107.26746 * 358.97571 * 20 11 10 22 22 H 1.08998 * 110.71534 * 219.44565 * 21 20 11 23 23 O 1.42892 * 110.72146 * 96.17225 * 21 20 11 24 24 C 1.53176 * 109.54103 * 179.97438 * 4 3 2 25 25 C 1.53095 * 109.16286 * 183.14851 * 24 4 3 26 26 O 1.42903 * 109.41530 * 57.61206 * 25 24 4 27 27 C 1.42906 * 114.09431 * 298.84283 * 26 25 24 28 28 C 1.53095 * 109.41780 * 61.15768 * 27 26 25 29 29 H 1.08006 * 119.99625 * 359.97438 * 1 2 3 30 30 H 1.08004 * 120.00134 * 180.02562 * 1 2 3 31 31 H 1.08006 * 119.99625 * 180.02562 * 2 1 3 32 32 H 1.09000 * 109.47217 * 4.99862 * 3 2 1 33 33 H 1.09002 * 109.46765 * 245.00139 * 3 2 1 34 34 H 0.97002 * 119.99707 * 359.97438 * 7 5 4 35 35 H 1.09004 * 110.36704 * 323.75092 * 10 8 7 36 36 H 1.08997 * 110.37240 * 86.07584 * 10 8 7 37 37 H 0.97001 * 119.99730 * 179.97438 * 15 14 12 38 38 H 1.08992 * 109.88317 * 239.56016 * 20 11 10 39 39 H 1.09003 * 109.88345 * 118.38791 * 20 11 10 40 40 H 0.96705 * 114.00349 * 66.47139 * 23 21 20 41 41 H 1.09001 * 109.52789 * 303.05792 * 24 4 3 42 42 H 1.09007 * 109.52321 * 63.24507 * 24 4 3 43 43 H 1.08997 * 109.47843 * 177.59528 * 25 24 4 44 44 H 1.08997 * 109.48336 * 297.62823 * 25 24 4 45 45 H 1.08998 * 109.48318 * 301.17291 * 27 26 25 46 46 H 1.09003 * 109.48829 * 181.14669 * 27 26 25 47 47 H 1.08998 * 109.52174 * 182.48760 * 28 27 26 48 48 H 1.08997 * 109.57369 * 62.32549 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3329 1.1816 5 6 2.2677 1.1930 2.4709 6 8 2.3270 2.0668 3.3099 7 7 1.5155 0.0967 2.6918 8 6 0.7698 -0.0397 3.9455 9 1 0.4160 0.9304 4.2946 10 6 1.6278 -0.7403 5.0283 11 7 0.6496 -1.3498 5.9483 12 6 0.8779 -1.6643 7.2614 13 1 1.8429 -1.4664 7.7041 14 6 -0.1313 -2.2366 8.0236 15 7 -1.3075 -2.4773 7.4841 16 14 0.1799 -2.6650 9.8150 17 1 -0.1731 -1.5036 10.6703 18 1 -0.6543 -3.8328 10.1968 19 1 1.6146 -2.9994 10.0019 20 6 -0.6109 -1.5643 5.2225 21 6 -0.4080 -1.0371 3.7863 22 1 -1.3028 -0.5241 3.4339 23 8 -0.0528 -2.1020 2.9022 24 6 3.8025 2.6587 1.1827 25 6 4.8268 2.6454 2.3204 26 8 5.7046 1.5297 2.1564 27 6 5.0485 0.2607 2.1945 28 6 4.0331 0.1782 1.0518 29 1 -0.5400 0.9354 0.0004 30 1 -0.5400 -0.9353 0.0004 31 1 1.8499 -0.9354 -0.0004 32 1 1.3587 2.1316 0.0895 33 1 2.6213 1.4025 -0.9314 34 1 1.4678 -0.6021 2.0207 35 1 2.2540 -1.5099 4.5769 36 1 2.2425 -0.0111 5.5559 37 1 -2.0125 -2.8776 8.0166 38 1 -1.4168 -1.0147 5.7087 39 1 -0.8475 -2.6280 5.1969 40 1 -0.7550 -2.7533 2.7688 41 1 4.3177 2.7823 0.2302 42 1 3.1049 3.4832 1.3303 43 1 5.4051 3.5691 2.2996 44 1 4.3082 2.5626 3.2756 45 1 4.5328 0.1466 3.1480 46 1 5.7866 -0.5337 2.0832 47 1 3.5005 -0.7713 1.1057 48 1 4.5521 0.2510 0.0961 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001220871453.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:15:54 Heat of formation + Delta-G solvation = -82.611627 kcal Electronic energy + Delta-G solvation = -30087.020222 eV Core-core repulsion = 26143.324752 eV Total energy + Delta-G solvation = -3943.695470 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.03672 -38.66365 -37.53494 -36.15995 -34.85425 -33.94324 -32.81317 -31.67046 -31.03105 -28.52737 -27.84338 -27.04444 -24.66233 -23.88786 -23.51798 -22.08029 -20.52842 -20.26217 -19.67707 -19.29480 -17.34119 -16.92394 -16.54140 -16.18432 -15.97541 -15.51607 -15.04622 -14.98183 -14.71306 -14.55532 -14.07233 -13.99816 -13.95270 -13.23054 -13.07634 -12.98951 -12.78333 -12.58334 -12.33504 -12.19691 -12.17933 -11.71553 -11.55175 -11.31178 -11.27105 -10.96178 -10.84270 -10.60791 -10.55829 -10.50812 -10.42643 -10.12060 -9.82400 -9.66859 -9.49070 -9.33764 -9.14605 -8.68557 -8.57316 -6.88331 -5.75947 -3.08717 2.10993 2.81792 3.36645 3.39821 3.44865 3.46883 3.89664 4.32918 4.44624 4.52477 4.57484 4.64303 4.86079 4.93442 5.01772 5.05621 5.21704 5.28767 5.35466 5.37952 5.48719 5.50539 5.53184 5.57510 5.65232 5.70326 5.74644 5.76440 5.83825 5.87600 5.92735 5.97711 6.04868 6.15763 6.22705 6.47842 6.59443 6.63301 6.66613 6.94616 7.20863 7.31874 7.43223 7.71619 7.86753 8.04949 8.18786 8.50551 9.17058 9.77190 10.41635 11.36305 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.016333 B = 0.003963 C = 0.003428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1713.885418 B = 7064.172996 C = 8165.907333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.175 4.175 3 C -0.078 4.078 4 C -0.075 4.075 5 C 0.518 3.482 6 O -0.543 6.543 7 N -0.701 5.701 8 C 0.137 3.863 9 H 0.101 0.899 10 C 0.133 3.867 11 N -0.600 5.600 12 C -0.224 4.224 13 H 0.079 0.921 14 C -0.009 4.009 15 N -0.927 5.927 16 Si 0.914 3.086 17 H -0.288 1.288 18 H -0.290 1.290 19 H -0.281 1.281 20 C 0.155 3.845 21 C 0.070 3.930 22 H 0.059 0.941 23 O -0.566 6.566 24 C -0.127 4.127 25 C 0.048 3.952 26 O -0.385 6.385 27 C 0.057 3.943 28 C -0.143 4.143 29 H 0.094 0.906 30 H 0.102 0.898 31 H 0.114 0.886 32 H 0.072 0.928 33 H 0.083 0.917 34 H 0.408 0.592 35 H 0.024 0.976 36 H 0.042 0.958 37 H 0.252 0.748 38 H 0.054 0.946 39 H 0.052 0.948 40 H 0.378 0.622 41 H 0.074 0.926 42 H 0.080 0.920 43 H 0.089 0.911 44 H 0.079 0.921 45 H 0.053 0.947 46 H 0.096 0.904 47 H 0.079 0.921 48 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.462 5.607 -18.820 20.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.193 4.193 3 C -0.116 4.116 4 C -0.078 4.078 5 C 0.304 3.696 6 O -0.421 6.421 7 N -0.355 5.355 8 C 0.031 3.969 9 H 0.119 0.881 10 C 0.005 3.995 11 N -0.327 5.327 12 C -0.352 4.352 13 H 0.097 0.903 14 C -0.204 4.204 15 N -0.575 5.575 16 Si 0.744 3.256 17 H -0.215 1.215 18 H -0.217 1.217 19 H -0.207 1.207 20 C 0.029 3.971 21 C 0.010 3.990 22 H 0.077 0.923 23 O -0.372 6.372 24 C -0.165 4.165 25 C -0.028 4.028 26 O -0.304 6.304 27 C -0.020 4.020 28 C -0.181 4.181 29 H 0.112 0.888 30 H 0.121 0.879 31 H 0.132 0.868 32 H 0.091 0.909 33 H 0.101 0.899 34 H 0.247 0.753 35 H 0.042 0.958 36 H 0.061 0.939 37 H 0.062 0.938 38 H 0.072 0.928 39 H 0.071 0.929 40 H 0.225 0.775 41 H 0.093 0.907 42 H 0.098 0.902 43 H 0.108 0.892 44 H 0.097 0.903 45 H 0.072 0.928 46 H 0.114 0.886 47 H 0.098 0.902 48 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 6.132 6.464 -18.072 20.149 hybrid contribution -0.944 -1.020 0.749 1.579 sum 5.188 5.444 -17.324 18.885 Atomic orbital electron populations 1.23900 0.95830 1.02087 0.98557 1.22889 0.96286 0.98263 1.01907 1.20768 0.97488 0.96235 0.97079 1.20893 0.95450 0.97771 0.93669 1.20369 0.79345 0.81968 0.87932 1.90647 1.63658 1.41059 1.46752 1.46114 1.47492 1.21622 1.20229 1.22324 0.91764 0.98330 0.84443 0.88135 1.21821 0.92510 0.94649 0.90484 1.44277 1.08631 1.72146 1.07602 1.19095 0.97807 1.33946 0.84393 0.90317 1.24778 0.95902 1.01241 0.98519 1.69913 1.03137 1.49253 1.35166 0.86079 0.77339 0.77663 0.84477 1.21546 1.21669 1.20656 1.21856 0.89640 0.99900 0.85679 1.23464 0.95299 0.87650 0.92562 0.92306 1.86247 1.44974 1.38542 1.67477 1.22015 0.98419 0.95919 1.00158 1.22844 0.91883 0.89056 0.99064 1.87880 1.34494 1.14060 1.93921 1.22587 0.95775 0.86267 0.97382 1.22305 0.97053 0.97796 1.00915 0.88807 0.87945 0.86801 0.90911 0.89906 0.75263 0.95849 0.93937 0.93753 0.92751 0.92948 0.77451 0.90721 0.90181 0.89249 0.90281 0.92824 0.88623 0.90227 0.89914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.55 13.92 29.02 0.40 -1.15 16 2 C -0.18 -1.61 5.81 -36.03 -0.21 -1.82 16 3 C -0.08 -0.71 4.73 -27.88 -0.13 -0.85 16 4 C -0.07 -0.84 0.51 -155.48 -0.08 -0.91 16 5 C 0.52 7.76 5.12 -10.99 -0.06 7.71 16 6 O -0.54 -9.99 13.53 5.55 0.08 -9.92 16 7 N -0.70 -10.54 4.39 -51.73 -0.23 -10.77 16 8 C 0.14 2.53 3.25 -65.78 -0.21 2.31 16 9 H 0.10 2.00 7.63 -51.93 -0.40 1.61 16 10 C 0.13 2.91 6.92 -2.51 -0.02 2.89 16 11 N -0.60 -15.38 3.40 -170.03 -0.58 -15.95 16 12 C -0.22 -6.32 10.28 -15.05 -0.15 -6.47 16 13 H 0.08 2.17 7.83 -52.49 -0.41 1.76 16 14 C -0.01 -0.24 5.49 -17.43 -0.10 -0.34 16 15 N -0.93 -26.72 10.31 55.49 0.57 -26.15 16 16 Si 0.91 22.21 29.55 -169.99 -5.02 17.19 16 17 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 18 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 19 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 20 C 0.15 3.59 5.14 -3.06 -0.02 3.58 16 21 C 0.07 1.23 4.20 -24.89 -0.10 1.13 16 22 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 23 O -0.57 -8.61 12.13 -35.23 -0.43 -9.04 16 24 C -0.13 -1.40 4.56 -26.59 -0.12 -1.52 16 25 C 0.05 0.61 6.55 37.21 0.24 0.85 16 26 O -0.38 -5.22 10.77 -35.23 -0.38 -5.60 16 27 C 0.06 0.70 6.62 37.21 0.25 0.94 16 28 C -0.14 -1.47 4.52 -26.59 -0.12 -1.59 16 29 H 0.09 0.87 7.84 -52.48 -0.41 0.45 16 30 H 0.10 0.90 8.06 -52.48 -0.42 0.48 16 31 H 0.11 0.98 6.76 -52.48 -0.35 0.63 16 32 H 0.07 0.69 7.79 -51.93 -0.40 0.28 16 33 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.41 5.53 3.96 -40.82 -0.16 5.37 16 35 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 36 H 0.04 0.98 8.14 -51.93 -0.42 0.55 16 37 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 38 H 0.05 1.40 7.38 -51.93 -0.38 1.01 16 39 H 0.05 1.33 7.43 -51.93 -0.39 0.94 16 40 H 0.38 4.44 9.12 45.56 0.42 4.86 16 41 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.08 0.89 8.03 -51.92 -0.42 0.48 16 43 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 44 H 0.08 1.23 5.80 -51.93 -0.30 0.92 16 45 H 0.05 0.78 7.38 -51.93 -0.38 0.40 16 46 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 47 H 0.08 0.78 6.11 -51.93 -0.32 0.46 16 48 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 367.60 15.07 5.54 5.54 Total: -1.00 -32.34 367.60 -7.73 -40.06 By element: Atomic # 1 Polarization: 16.72 SS G_CDS: -6.85 Total: 9.87 kcal Atomic # 6 Polarization: 5.20 SS G_CDS: -0.43 Total: 4.77 kcal Atomic # 7 Polarization: -52.64 SS G_CDS: -0.23 Total: -52.87 kcal Atomic # 8 Polarization: -23.83 SS G_CDS: -0.73 Total: -24.56 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.34 -7.73 -40.06 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001220871453.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.549 kcal (2) G-P(sol) polarization free energy of solvation -32.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds