Wall clock time and date at job start Tue Mar 31 2020 15:15:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50699 * 120.00290 * 2 1 4 4 C 1.52999 * 109.47116 * 125.00310 * 3 2 1 5 5 C 1.50693 * 109.61319 * 300.21848 * 4 3 2 6 6 O 1.21288 * 120.00317 * 239.78226 * 5 4 3 7 7 N 1.34779 * 120.00177 * 59.78508 * 5 4 3 8 8 C 1.46505 * 120.00383 * 179.97438 * 7 5 4 9 9 H 1.09001 * 110.88183 * 34.29206 * 8 7 5 10 10 C 1.54904 * 111.00208 * 270.41727 * 8 7 5 11 11 N 1.47466 * 104.80953 * 204.94844 * 10 8 7 12 12 C 1.36942 * 125.62900 * 204.04354 * 11 10 8 13 13 H 1.08001 * 119.99638 * 0.02562 * 12 11 10 14 14 C 1.38819 * 119.99905 * 179.97438 * 12 11 10 15 15 N 1.31616 * 119.99881 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 119.99687 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47255 * 90.00127 * 16 14 12 18 18 H 1.48504 * 109.46949 * 210.00447 * 16 14 12 19 19 H 1.48498 * 109.47336 * 330.00106 * 16 14 12 20 20 C 1.47022 * 108.72547 * 24.07024 * 11 10 8 21 21 C 1.54335 * 107.26746 * 358.97571 * 20 11 10 22 22 H 1.08998 * 110.71534 * 219.44565 * 21 20 11 23 23 O 1.42892 * 110.72146 * 96.17225 * 21 20 11 24 24 C 1.53176 * 109.54103 * 179.97438 * 4 3 2 25 25 C 1.53095 * 109.16286 * 183.14851 * 24 4 3 26 26 O 1.42903 * 109.41530 * 57.61206 * 25 24 4 27 27 C 1.42906 * 114.09431 * 298.84283 * 26 25 24 28 28 C 1.53095 * 109.41780 * 61.15768 * 27 26 25 29 29 H 1.08006 * 119.99625 * 359.97438 * 1 2 3 30 30 H 1.08004 * 120.00134 * 180.02562 * 1 2 3 31 31 H 1.08006 * 119.99625 * 180.02562 * 2 1 3 32 32 H 1.09000 * 109.47217 * 4.99862 * 3 2 1 33 33 H 1.09002 * 109.46765 * 245.00139 * 3 2 1 34 34 H 0.97002 * 119.99707 * 359.97438 * 7 5 4 35 35 H 1.09004 * 110.36704 * 323.75092 * 10 8 7 36 36 H 1.08997 * 110.37240 * 86.07584 * 10 8 7 37 37 H 0.97001 * 119.99730 * 179.97438 * 15 14 12 38 38 H 1.08992 * 109.88317 * 239.56016 * 20 11 10 39 39 H 1.09003 * 109.88345 * 118.38791 * 20 11 10 40 40 H 0.96705 * 114.00349 * 66.47139 * 23 21 20 41 41 H 1.09001 * 109.52789 * 303.05792 * 24 4 3 42 42 H 1.09007 * 109.52321 * 63.24507 * 24 4 3 43 43 H 1.08997 * 109.47843 * 177.59528 * 25 24 4 44 44 H 1.08997 * 109.48336 * 297.62823 * 25 24 4 45 45 H 1.08998 * 109.48318 * 301.17291 * 27 26 25 46 46 H 1.09003 * 109.48829 * 181.14669 * 27 26 25 47 47 H 1.08998 * 109.52174 * 182.48760 * 28 27 26 48 48 H 1.08997 * 109.57369 * 62.32549 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3329 1.1816 5 6 2.2677 1.1930 2.4709 6 8 2.3270 2.0668 3.3099 7 7 1.5155 0.0967 2.6918 8 6 0.7698 -0.0397 3.9455 9 1 0.4160 0.9304 4.2946 10 6 1.6278 -0.7403 5.0283 11 7 0.6496 -1.3498 5.9483 12 6 0.8779 -1.6643 7.2614 13 1 1.8429 -1.4664 7.7041 14 6 -0.1313 -2.2366 8.0236 15 7 -1.3075 -2.4773 7.4841 16 14 0.1799 -2.6650 9.8150 17 1 -0.1731 -1.5036 10.6703 18 1 -0.6543 -3.8328 10.1968 19 1 1.6146 -2.9994 10.0019 20 6 -0.6109 -1.5643 5.2225 21 6 -0.4080 -1.0371 3.7863 22 1 -1.3028 -0.5241 3.4339 23 8 -0.0528 -2.1020 2.9022 24 6 3.8025 2.6587 1.1827 25 6 4.8268 2.6454 2.3204 26 8 5.7046 1.5297 2.1564 27 6 5.0485 0.2607 2.1945 28 6 4.0331 0.1782 1.0518 29 1 -0.5400 0.9354 0.0004 30 1 -0.5400 -0.9353 0.0004 31 1 1.8499 -0.9354 -0.0004 32 1 1.3587 2.1316 0.0895 33 1 2.6213 1.4025 -0.9314 34 1 1.4678 -0.6021 2.0207 35 1 2.2540 -1.5099 4.5769 36 1 2.2425 -0.0111 5.5559 37 1 -2.0125 -2.8776 8.0166 38 1 -1.4168 -1.0147 5.7087 39 1 -0.8475 -2.6280 5.1969 40 1 -0.7550 -2.7533 2.7688 41 1 4.3177 2.7823 0.2302 42 1 3.1049 3.4832 1.3303 43 1 5.4051 3.5691 2.2996 44 1 4.3082 2.5626 3.2756 45 1 4.5328 0.1466 3.1480 46 1 5.7866 -0.5337 2.0832 47 1 3.5005 -0.7713 1.1057 48 1 4.5521 0.2510 0.0961 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001220871453.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:15:53 Heat of formation + Delta-G solvation = -106.902069 kcal Electronic energy + Delta-G solvation = -30088.073534 eV Core-core repulsion = 26143.324752 eV Total energy + Delta-G solvation = -3944.748783 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.11769 -40.08425 -38.82009 -37.09371 -36.45078 -35.38277 -33.70267 -33.48319 -32.02317 -30.28467 -28.96374 -28.49519 -26.52012 -24.81844 -24.56466 -23.23979 -22.26704 -21.65804 -20.55359 -20.51335 -19.13573 -18.33588 -17.72412 -17.17390 -16.97633 -16.92533 -16.67198 -16.15287 -15.96130 -15.78047 -15.55140 -15.06615 -15.02064 -14.74119 -14.52485 -14.37795 -13.99812 -13.93415 -13.68590 -13.27032 -13.18926 -13.15708 -12.82812 -12.74952 -12.49278 -12.33464 -12.28803 -12.17919 -12.08959 -11.93326 -11.87629 -11.58293 -11.35570 -10.89179 -10.78521 -10.67763 -10.42259 -10.14573 -9.89515 -8.96702 -7.90747 -5.26486 1.39616 1.43636 1.45400 1.53970 1.64920 2.14443 2.47396 2.93896 3.17771 3.28386 3.46947 3.54008 3.68575 3.75479 3.82225 3.94778 4.00311 4.03879 4.22922 4.24740 4.28766 4.32833 4.48279 4.55373 4.64010 4.65662 4.67814 4.74620 4.78611 4.83246 4.89041 4.99940 5.02548 5.05183 5.08920 5.17971 5.24196 5.33988 5.44744 5.53138 5.63132 5.80768 5.91664 6.12485 6.22184 6.64879 6.87442 7.04923 7.31421 7.68729 8.32424 9.18986 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.016333 B = 0.003963 C = 0.003428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1713.885418 B = 7064.172996 C = 8165.907333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.181 4.181 3 C -0.073 4.073 4 C -0.068 4.068 5 C 0.514 3.486 6 O -0.581 6.581 7 N -0.690 5.690 8 C 0.150 3.850 9 H 0.084 0.916 10 C 0.136 3.864 11 N -0.620 5.620 12 C -0.249 4.249 13 H 0.074 0.926 14 C -0.057 4.057 15 N -0.946 5.946 16 Si 0.978 3.022 17 H -0.286 1.286 18 H -0.288 1.288 19 H -0.273 1.273 20 C 0.160 3.840 21 C 0.097 3.903 22 H 0.089 0.911 23 O -0.561 6.561 24 C -0.124 4.124 25 C 0.045 3.955 26 O -0.394 6.394 27 C 0.051 3.949 28 C -0.137 4.137 29 H 0.092 0.908 30 H 0.108 0.892 31 H 0.124 0.876 32 H 0.069 0.931 33 H 0.111 0.889 34 H 0.417 0.583 35 H 0.023 0.977 36 H 0.021 0.979 37 H 0.250 0.750 38 H 0.023 0.977 39 H 0.028 0.972 40 H 0.397 0.603 41 H 0.104 0.896 42 H 0.076 0.924 43 H 0.106 0.894 44 H 0.043 0.957 45 H 0.019 0.981 46 H 0.114 0.886 47 H 0.087 0.913 48 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.015 5.343 -21.441 22.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.199 4.199 3 C -0.110 4.110 4 C -0.071 4.071 5 C 0.302 3.698 6 O -0.462 6.462 7 N -0.344 5.344 8 C 0.043 3.957 9 H 0.102 0.898 10 C 0.009 3.991 11 N -0.347 5.347 12 C -0.378 4.378 13 H 0.092 0.908 14 C -0.250 4.250 15 N -0.595 5.595 16 Si 0.806 3.194 17 H -0.213 1.213 18 H -0.214 1.214 19 H -0.198 1.198 20 C 0.035 3.965 21 C 0.037 3.963 22 H 0.106 0.894 23 O -0.369 6.369 24 C -0.161 4.161 25 C -0.032 4.032 26 O -0.314 6.314 27 C -0.026 4.026 28 C -0.175 4.175 29 H 0.110 0.890 30 H 0.126 0.874 31 H 0.142 0.858 32 H 0.087 0.913 33 H 0.129 0.871 34 H 0.260 0.740 35 H 0.040 0.960 36 H 0.039 0.961 37 H 0.059 0.941 38 H 0.041 0.959 39 H 0.046 0.954 40 H 0.248 0.752 41 H 0.123 0.877 42 H 0.094 0.906 43 H 0.124 0.876 44 H 0.061 0.939 45 H 0.038 0.962 46 H 0.132 0.868 47 H 0.106 0.894 48 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 6.690 6.183 -20.745 22.657 hybrid contribution -1.067 -0.936 1.593 2.133 sum 5.623 5.247 -19.152 20.638 Atomic orbital electron populations 1.24015 0.96094 1.02372 0.98512 1.23017 0.96354 0.98666 1.01830 1.20782 0.97125 0.96167 0.96967 1.20932 0.95659 0.98472 0.92043 1.21207 0.78699 0.80980 0.88957 1.90644 1.64690 1.42390 1.48435 1.45998 1.47245 1.22247 1.18947 1.21881 0.91592 0.97300 0.84947 0.89767 1.21836 0.92321 0.94089 0.90885 1.44545 1.10185 1.72340 1.07614 1.19394 0.97934 1.34400 0.86041 0.90827 1.25572 0.95754 1.01280 1.02439 1.70107 1.03593 1.49503 1.36289 0.85089 0.77502 0.77217 0.79573 1.21277 1.21404 1.19794 1.21723 0.87896 0.98138 0.88757 1.23039 0.95836 0.87866 0.89577 0.89376 1.86210 1.46129 1.38541 1.66023 1.22024 0.97889 0.95627 1.00590 1.22852 0.92433 0.89601 0.98289 1.87864 1.35074 1.14546 1.93875 1.22705 0.96732 0.86386 0.96772 1.22325 0.96314 0.97612 1.01203 0.88981 0.87388 0.85824 0.91264 0.87052 0.74050 0.95954 0.96054 0.94095 0.95926 0.95432 0.75192 0.87734 0.90582 0.87642 0.93887 0.96247 0.86768 0.89425 0.86944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.72 13.92 67.78 0.94 -1.78 16 2 C -0.18 -2.71 5.81 25.65 0.15 -2.56 16 3 C -0.07 -1.08 4.73 29.85 0.14 -0.93 16 4 C -0.07 -1.36 0.51 -52.81 -0.03 -1.39 16 5 C 0.51 15.12 5.12 87.65 0.45 15.57 16 6 O -0.58 -21.98 13.53 -3.06 -0.04 -22.02 16 7 N -0.69 -20.11 4.39 -435.96 -1.92 -22.03 16 8 C 0.15 5.55 3.25 46.38 0.15 5.70 16 9 H 0.08 3.44 7.63 -2.39 -0.02 3.42 16 10 C 0.14 6.15 6.92 86.85 0.60 6.75 16 11 N -0.62 -32.88 3.40 -691.86 -2.35 -35.23 16 12 C -0.25 -14.47 10.28 84.03 0.86 -13.60 16 13 H 0.07 4.21 7.83 -2.91 -0.02 4.19 16 14 C -0.06 -3.27 5.49 84.86 0.47 -2.80 16 15 N -0.95 -55.84 10.31 21.65 0.22 -55.62 16 16 Si 0.98 46.32 29.55 68.60 2.03 48.35 16 17 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 18 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 19 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 20 C 0.16 7.62 5.14 86.73 0.45 8.07 16 21 C 0.10 3.33 4.20 31.78 0.13 3.47 16 22 H 0.09 2.60 8.14 -2.39 -0.02 2.58 16 23 O -0.56 -15.82 12.13 -148.98 -1.81 -17.63 16 24 C -0.12 -2.44 4.56 30.69 0.14 -2.30 16 25 C 0.04 1.11 6.55 72.01 0.47 1.59 16 26 O -0.39 -10.30 10.77 -148.98 -1.60 -11.90 16 27 C 0.05 1.19 6.62 72.01 0.48 1.67 16 28 C -0.14 -2.41 4.52 30.69 0.14 -2.27 16 29 H 0.09 1.48 7.84 -2.91 -0.02 1.45 16 30 H 0.11 1.57 8.06 -2.91 -0.02 1.55 16 31 H 0.12 1.63 6.76 -2.91 -0.02 1.61 16 32 H 0.07 1.10 7.79 -2.39 -0.02 1.09 16 33 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.42 10.43 3.96 -92.71 -0.37 10.07 16 35 H 0.02 1.03 8.14 -2.38 -0.02 1.01 16 36 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.25 14.27 8.31 -92.71 -0.77 13.49 16 38 H 0.02 1.21 7.38 -2.39 -0.02 1.19 16 39 H 0.03 1.43 7.43 -2.39 -0.02 1.41 16 40 H 0.40 8.27 9.12 -74.05 -0.68 7.60 16 41 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 42 H 0.08 1.58 8.03 -2.38 -0.02 1.56 16 43 H 0.11 2.21 8.14 -2.39 -0.02 2.19 16 44 H 0.04 1.39 5.80 -2.39 -0.01 1.38 16 45 H 0.02 0.58 7.38 -2.39 -0.02 0.56 16 46 H 0.11 2.19 8.14 -2.39 -0.02 2.17 16 47 H 0.09 1.42 6.11 -2.39 -0.01 1.41 16 48 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 Total: -1.00 -73.19 367.60 0.00 -73.19 By element: Atomic # 1 Polarization: 27.79 SS G_CDS: -0.07 Total: 27.71 kcal Atomic # 6 Polarization: 9.62 SS G_CDS: 5.54 Total: 15.17 kcal Atomic # 7 Polarization: -108.83 SS G_CDS: -4.04 Total: -112.87 kcal Atomic # 8 Polarization: -48.10 SS G_CDS: -3.45 Total: -51.55 kcal Atomic # 14 Polarization: 46.32 SS G_CDS: 2.03 Total: 48.35 kcal Total: -73.19 0.00 -73.19 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001220871453.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.715 kcal (2) G-P(sol) polarization free energy of solvation -73.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds