Wall clock time and date at job start Tue Mar 31 2020 13:55:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86800 * 119.99790 * 2 1 4 4 H 1.48505 * 109.46808 * 275.14377 * 3 2 1 5 5 H 1.48498 * 109.47365 * 35.14001 * 3 2 1 6 6 H 1.48497 * 109.47166 * 155.14768 * 3 2 1 7 7 C 1.38809 * 120.00154 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99919 * 338.55043 * 7 2 1 9 9 N 1.36940 * 120.00072 * 158.55399 * 7 2 1 10 10 C 1.46614 * 119.88973 * 330.52385 * 9 7 2 11 11 C 1.53099 * 108.05008 * 237.35194 * 10 9 7 12 12 C 1.53016 * 109.44863 * 301.00193 * 11 10 9 13 13 H 1.09005 * 113.42299 * 274.22681 * 12 11 10 14 14 C 1.54649 * 110.83996 * 143.88558 * 12 11 10 15 15 N 1.47800 * 85.79434 * 270.23247 * 14 12 11 16 16 C 1.34771 * 135.01695 * 153.83750 * 15 14 12 17 17 O 1.21286 * 120.00233 * 179.97438 * 16 15 14 18 18 C 1.50705 * 119.99792 * 0.02562 * 16 15 14 19 19 O 1.42903 * 109.46791 * 179.97438 * 18 16 15 20 20 C 1.42905 * 113.99496 * 179.97438 * 19 18 16 21 21 C 1.53000 * 109.47044 * 179.97438 * 20 19 18 22 22 H 1.08998 * 110.43752 * 303.91513 * 21 20 19 23 23 C 1.54804 * 110.48957 * 181.22215 * 21 20 19 24 24 C 1.54999 * 102.09341 * 220.44489 * 23 21 20 25 25 O 1.44373 * 103.48885 * 37.02635 * 24 23 21 26 26 C 1.43745 * 106.97679 * 319.93865 * 25 24 23 27 27 C 1.46818 * 89.97226 * 333.80456 * 15 14 12 28 28 H 1.08999 * 111.56323 * 274.47928 * 27 15 14 29 29 C 1.45776 * 119.95441 * 150.57571 * 9 7 2 30 30 H 0.96995 * 119.99830 * 0.02562 * 1 2 3 31 31 H 1.08999 * 109.76000 * 117.69770 * 10 9 7 32 32 H 1.08998 * 109.75554 * 357.00291 * 10 9 7 33 33 H 1.09004 * 109.47793 * 60.99404 * 11 10 9 34 34 H 1.09003 * 109.47990 * 181.00485 * 11 10 9 35 35 H 1.09010 * 113.81811 * 24.45138 * 14 12 11 36 36 H 1.08997 * 113.82225 * 156.00953 * 14 12 11 37 37 H 1.08998 * 109.46694 * 299.99513 * 18 16 15 38 38 H 1.08993 * 109.47164 * 59.99939 * 18 16 15 39 39 H 1.08997 * 109.47055 * 300.00054 * 20 19 18 40 40 H 1.08998 * 109.46949 * 60.00230 * 20 19 18 41 41 H 1.09003 * 110.91072 * 338.64287 * 23 21 20 42 42 H 1.08999 * 110.90830 * 102.24655 * 23 21 20 43 43 H 1.08993 * 110.61768 * 278.52349 * 24 23 21 44 44 H 1.09005 * 110.75194 * 155.58658 * 24 23 21 45 45 H 1.09004 * 109.87603 * 267.09079 * 26 25 24 46 46 H 1.08998 * 110.00687 * 146.01180 * 26 25 24 47 47 H 1.08995 * 108.70556 * 19.73637 * 29 9 7 48 48 H 1.08995 * 108.59500 * 261.66120 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3889 2.1092 -1.3945 5 1 1.5062 2.6189 0.8058 6 1 3.5979 1.4113 0.5884 7 6 2.0103 -1.2021 0.0005 8 1 1.5265 -2.1049 0.3430 9 7 3.3086 -1.2433 -0.4330 10 6 3.7701 -0.2926 -1.4493 11 6 4.3163 -1.0931 -2.6345 12 6 5.4629 -1.9882 -2.1597 13 1 6.4299 -1.4853 -2.1503 14 6 5.4522 -3.3404 -2.9101 15 7 4.5725 -3.8140 -1.8210 16 6 3.6249 -4.7654 -1.7065 17 8 3.0534 -4.9280 -0.6491 18 6 3.2763 -5.6282 -2.8920 19 8 2.2526 -6.5543 -2.5224 20 6 1.8462 -7.4241 -3.5809 21 6 0.7531 -8.3674 -3.0746 22 1 1.1008 -8.9186 -2.2009 23 6 0.3164 -9.3418 -4.1953 24 6 -1.2204 -9.3932 -4.0004 25 8 -1.5582 -8.0395 -3.6295 26 6 -0.5276 -7.5784 -2.7399 27 6 5.1594 -2.8187 -0.9151 28 1 6.0713 -3.1907 -0.4480 29 6 4.2282 -2.2325 0.1156 30 1 -0.4850 0.8400 -0.0004 31 1 4.5582 0.3361 -1.0349 32 1 2.9371 0.3292 -1.7773 33 1 3.5218 -1.7113 -3.0526 34 1 4.6830 -0.4072 -3.3983 35 1 4.9642 -3.2995 -3.8840 36 1 6.4228 -3.8355 -2.9390 37 1 2.9200 -4.9985 -3.7072 38 1 4.1614 -6.1756 -3.2157 39 1 1.4598 -6.8314 -4.4100 40 1 2.7016 -8.0085 -3.9196 41 1 0.5708 -8.9440 -5.1777 42 1 0.7602 -10.3266 -4.0492 43 1 -1.4830 -10.0869 -3.2017 44 1 -1.7184 -9.6724 -4.9289 45 1 -0.8189 -7.7658 -1.7063 46 1 -0.3558 -6.5124 -2.8888 47 1 3.6476 -3.0399 0.5618 48 1 4.8237 -1.7584 0.8957 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001221845460.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:55:29 Heat of formation + Delta-G solvation = -52.235620 kcal Electronic energy + Delta-G solvation = -28711.114812 eV Core-core repulsion = 24768.736544 eV Total energy + Delta-G solvation = -3942.378268 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.66272 -39.71520 -38.35680 -36.95962 -35.50676 -33.04856 -31.93463 -31.12743 -30.18593 -29.51504 -27.53759 -26.93145 -25.38540 -23.69898 -23.31724 -22.66174 -21.27748 -20.79535 -20.10895 -17.83951 -17.27773 -16.94085 -16.69353 -16.47172 -16.10001 -15.91606 -15.48565 -15.26028 -15.10592 -14.98972 -14.09390 -13.87293 -13.65318 -13.55333 -13.19088 -12.98873 -12.77040 -12.59622 -12.33105 -12.20792 -11.93867 -11.90923 -11.80633 -11.48755 -11.40788 -11.17721 -11.12121 -10.89932 -10.86992 -10.70608 -10.26952 -9.96553 -9.82668 -9.71308 -9.68302 -9.40579 -9.09784 -8.60828 -8.30213 -6.85873 -5.84515 -3.20860 2.70554 2.99034 3.35727 3.52953 3.56376 3.66146 3.81280 4.30608 4.48252 4.49382 4.60507 4.63553 4.74663 4.92036 4.96526 5.00697 5.02267 5.04122 5.11882 5.19034 5.24090 5.27336 5.39043 5.40304 5.43157 5.47695 5.54945 5.58804 5.64723 5.65347 5.81778 5.84459 5.87992 5.98586 6.00146 6.18462 6.28636 6.35691 6.61138 6.66944 6.74208 6.83976 6.93427 7.01476 8.01870 8.12373 8.48395 8.56066 9.08853 9.83296 10.17071 11.31552 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.013793 B = 0.003398 C = 0.002907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2029.537948 B = 8239.317034 C = 9628.005412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.023 3.977 3 Si 0.879 3.121 4 H -0.290 1.290 5 H -0.304 1.304 6 H -0.270 1.270 7 C -0.253 4.253 8 H 0.085 0.915 9 N -0.596 5.596 10 C 0.128 3.872 11 C -0.118 4.118 12 C -0.108 4.108 13 H 0.091 0.909 14 C 0.095 3.905 15 N -0.633 5.633 16 C 0.538 3.462 17 O -0.505 6.505 18 C 0.054 3.946 19 O -0.359 6.359 20 C 0.070 3.930 21 C -0.120 4.120 22 H 0.093 0.907 23 C -0.148 4.148 24 C 0.046 3.954 25 O -0.379 6.379 26 C 0.052 3.948 27 C 0.135 3.865 28 H 0.080 0.920 29 C 0.142 3.858 30 H 0.261 0.739 31 H 0.027 0.973 32 H 0.074 0.926 33 H 0.067 0.933 34 H 0.059 0.941 35 H 0.078 0.922 36 H 0.081 0.919 37 H 0.076 0.924 38 H 0.072 0.928 39 H 0.055 0.945 40 H 0.051 0.949 41 H 0.079 0.921 42 H 0.082 0.918 43 H 0.060 0.940 44 H 0.092 0.908 45 H 0.064 0.936 46 H 0.094 0.906 47 H 0.081 0.919 48 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.790 -15.653 -12.664 22.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.175 4.175 3 Si 0.710 3.290 4 H -0.218 1.218 5 H -0.232 1.232 6 H -0.195 1.195 7 C -0.382 4.382 8 H 0.102 0.898 9 N -0.319 5.319 10 C 0.002 3.998 11 C -0.157 4.157 12 C -0.127 4.127 13 H 0.109 0.891 14 C -0.029 4.029 15 N -0.372 5.372 16 C 0.326 3.674 17 O -0.379 6.379 18 C -0.026 4.026 19 O -0.277 6.277 20 C -0.007 4.007 21 C -0.138 4.138 22 H 0.111 0.889 23 C -0.185 4.185 24 C -0.031 4.031 25 O -0.298 6.298 26 C -0.024 4.024 27 C 0.032 3.968 28 H 0.098 0.902 29 C 0.015 3.985 30 H 0.071 0.929 31 H 0.045 0.955 32 H 0.092 0.908 33 H 0.086 0.914 34 H 0.077 0.923 35 H 0.097 0.903 36 H 0.099 0.901 37 H 0.094 0.906 38 H 0.090 0.910 39 H 0.073 0.927 40 H 0.070 0.930 41 H 0.098 0.902 42 H 0.101 0.899 43 H 0.078 0.922 44 H 0.110 0.890 45 H 0.082 0.918 46 H 0.113 0.887 47 H 0.099 0.901 48 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 9.862 -15.740 -11.895 22.057 hybrid contribution 0.897 0.797 -0.316 1.240 sum 10.759 -14.943 -12.211 22.094 Atomic orbital electron populations 1.69873 1.05748 1.26300 1.53077 1.25295 0.95172 0.97368 0.99678 0.86958 0.80315 0.84970 0.76786 1.21818 1.23202 1.19520 1.18960 0.85312 0.94817 1.39093 0.89760 1.43826 1.09066 1.35866 1.43186 1.21209 0.97763 0.92090 0.88713 1.21872 0.96452 0.98402 0.99011 1.22881 0.99891 0.94572 0.95379 0.89103 1.23593 0.93550 0.93237 0.92473 1.49706 1.37067 1.34747 1.15695 1.19600 0.79304 0.79131 0.89354 1.90754 1.50340 1.67434 1.29333 1.22094 0.91965 0.92131 0.96365 1.88028 1.55554 1.48486 1.35678 1.22561 0.96403 0.91697 0.90035 1.22527 0.95667 0.96135 0.99508 0.88852 1.23143 0.96680 0.99654 0.99060 1.23522 0.93861 0.85283 1.00426 1.88906 1.47035 1.27930 1.65963 1.23248 0.85293 0.99969 0.93919 1.22339 0.95423 0.85667 0.93414 0.90204 1.20247 0.92240 0.93470 0.92515 0.92917 0.95544 0.90769 0.91439 0.92277 0.90328 0.90084 0.90605 0.91028 0.92672 0.93035 0.90218 0.89891 0.92162 0.88991 0.91773 0.88750 0.90092 0.95711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.93 13.97 55.49 0.78 -28.16 16 2 C 0.02 0.70 5.18 -17.43 -0.09 0.61 16 3 Si 0.88 22.71 24.44 -169.99 -4.15 18.55 16 4 H -0.29 -7.16 6.72 56.52 0.38 -6.78 16 5 H -0.30 -8.02 7.11 56.52 0.40 -7.61 16 6 H -0.27 -6.79 6.73 56.52 0.38 -6.41 16 7 C -0.25 -7.50 9.94 -15.06 -0.15 -7.65 16 8 H 0.08 2.80 8.02 -52.49 -0.42 2.38 16 9 N -0.60 -14.67 2.75 -175.00 -0.48 -15.15 16 10 C 0.13 2.75 4.18 -3.93 -0.02 2.74 16 11 C -0.12 -1.95 5.66 -26.67 -0.15 -2.10 16 12 C -0.11 -1.45 4.39 -89.97 -0.40 -1.84 16 13 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 14 C 0.09 1.03 7.97 -3.01 -0.02 1.01 16 15 N -0.63 -9.98 3.34 -174.03 -0.58 -10.56 16 16 C 0.54 9.78 8.07 -10.99 -0.09 9.69 16 17 O -0.51 -11.80 15.62 -14.36 -0.22 -12.03 16 18 C 0.05 0.74 6.20 36.01 0.22 0.97 16 19 O -0.36 -5.48 9.62 -55.14 -0.53 -6.01 16 20 C 0.07 0.76 5.03 37.16 0.19 0.94 16 21 C -0.12 -1.25 3.34 -89.09 -0.30 -1.55 16 22 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 23 C -0.15 -1.15 6.71 -24.73 -0.17 -1.31 16 24 C 0.05 0.41 7.72 38.21 0.29 0.71 16 25 O -0.38 -5.04 11.52 -35.23 -0.41 -5.45 16 26 C 0.05 0.69 7.23 37.73 0.27 0.96 16 27 C 0.14 2.18 4.23 -69.60 -0.29 1.89 16 28 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 29 C 0.14 3.01 6.17 -5.55 -0.03 2.97 16 30 H 0.26 7.87 8.31 -40.82 -0.34 7.53 16 31 H 0.03 0.55 7.31 -51.93 -0.38 0.17 16 32 H 0.07 1.78 4.50 -51.93 -0.23 1.54 16 33 H 0.07 1.24 7.69 -51.93 -0.40 0.84 16 34 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.08 0.76 7.97 -51.92 -0.41 0.34 16 36 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 40 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.08 0.57 7.87 -51.93 -0.41 0.16 16 42 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 46 H 0.09 1.40 7.60 -51.93 -0.39 1.01 16 47 H 0.08 1.96 6.33 -51.93 -0.33 1.63 16 48 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 373.42 15.07 5.63 5.63 Total: -1.00 -37.36 373.42 -8.78 -46.14 By element: Atomic # 1 Polarization: 7.09 SS G_CDS: -8.08 Total: -0.99 kcal Atomic # 6 Polarization: 8.75 SS G_CDS: -0.73 Total: 8.02 kcal Atomic # 7 Polarization: -53.57 SS G_CDS: -0.29 Total: -53.86 kcal Atomic # 8 Polarization: -22.33 SS G_CDS: -1.16 Total: -23.49 kcal Atomic # 14 Polarization: 22.71 SS G_CDS: -4.15 Total: 18.55 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -37.36 -8.78 -46.14 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001221845460.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.096 kcal (2) G-P(sol) polarization free energy of solvation -37.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds