Wall clock time and date at job start Tue Mar 31 2020 13:55:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86800 * 119.99790 * 2 1 4 4 H 1.48505 * 109.46808 * 275.14377 * 3 2 1 5 5 H 1.48498 * 109.47365 * 35.14001 * 3 2 1 6 6 H 1.48497 * 109.47166 * 155.14768 * 3 2 1 7 7 C 1.38809 * 120.00154 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99919 * 338.55043 * 7 2 1 9 9 N 1.36940 * 120.00072 * 158.55399 * 7 2 1 10 10 C 1.46614 * 119.88973 * 330.52385 * 9 7 2 11 11 C 1.53099 * 108.05008 * 237.35194 * 10 9 7 12 12 C 1.53016 * 109.44863 * 301.00193 * 11 10 9 13 13 H 1.09005 * 113.42299 * 274.22681 * 12 11 10 14 14 C 1.54649 * 110.83996 * 143.88558 * 12 11 10 15 15 N 1.47800 * 85.79434 * 270.23247 * 14 12 11 16 16 C 1.34771 * 135.01695 * 153.83750 * 15 14 12 17 17 O 1.21286 * 120.00233 * 179.97438 * 16 15 14 18 18 C 1.50705 * 119.99792 * 0.02562 * 16 15 14 19 19 O 1.42903 * 109.46791 * 179.97438 * 18 16 15 20 20 C 1.42905 * 113.99496 * 179.97438 * 19 18 16 21 21 C 1.53000 * 109.47044 * 179.97438 * 20 19 18 22 22 H 1.08998 * 110.43752 * 303.91513 * 21 20 19 23 23 C 1.54804 * 110.48957 * 181.22215 * 21 20 19 24 24 C 1.54999 * 102.09341 * 220.44489 * 23 21 20 25 25 O 1.44373 * 103.48885 * 37.02635 * 24 23 21 26 26 C 1.43745 * 106.97679 * 319.93865 * 25 24 23 27 27 C 1.46818 * 89.97226 * 333.80456 * 15 14 12 28 28 H 1.08999 * 111.56323 * 274.47928 * 27 15 14 29 29 C 1.45776 * 119.95441 * 150.57571 * 9 7 2 30 30 H 0.96995 * 119.99830 * 0.02562 * 1 2 3 31 31 H 1.08999 * 109.76000 * 117.69770 * 10 9 7 32 32 H 1.08998 * 109.75554 * 357.00291 * 10 9 7 33 33 H 1.09004 * 109.47793 * 60.99404 * 11 10 9 34 34 H 1.09003 * 109.47990 * 181.00485 * 11 10 9 35 35 H 1.09010 * 113.81811 * 24.45138 * 14 12 11 36 36 H 1.08997 * 113.82225 * 156.00953 * 14 12 11 37 37 H 1.08998 * 109.46694 * 299.99513 * 18 16 15 38 38 H 1.08993 * 109.47164 * 59.99939 * 18 16 15 39 39 H 1.08997 * 109.47055 * 300.00054 * 20 19 18 40 40 H 1.08998 * 109.46949 * 60.00230 * 20 19 18 41 41 H 1.09003 * 110.91072 * 338.64287 * 23 21 20 42 42 H 1.08999 * 110.90830 * 102.24655 * 23 21 20 43 43 H 1.08993 * 110.61768 * 278.52349 * 24 23 21 44 44 H 1.09005 * 110.75194 * 155.58658 * 24 23 21 45 45 H 1.09004 * 109.87603 * 267.09079 * 26 25 24 46 46 H 1.08998 * 110.00687 * 146.01180 * 26 25 24 47 47 H 1.08995 * 108.70556 * 19.73637 * 29 9 7 48 48 H 1.08995 * 108.59500 * 261.66120 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3889 2.1092 -1.3945 5 1 1.5062 2.6189 0.8058 6 1 3.5979 1.4113 0.5884 7 6 2.0103 -1.2021 0.0005 8 1 1.5265 -2.1049 0.3430 9 7 3.3086 -1.2433 -0.4330 10 6 3.7701 -0.2926 -1.4493 11 6 4.3163 -1.0931 -2.6345 12 6 5.4629 -1.9882 -2.1597 13 1 6.4299 -1.4853 -2.1503 14 6 5.4522 -3.3404 -2.9101 15 7 4.5725 -3.8140 -1.8210 16 6 3.6249 -4.7654 -1.7065 17 8 3.0534 -4.9280 -0.6491 18 6 3.2763 -5.6282 -2.8920 19 8 2.2526 -6.5543 -2.5224 20 6 1.8462 -7.4241 -3.5809 21 6 0.7531 -8.3674 -3.0746 22 1 1.1008 -8.9186 -2.2009 23 6 0.3164 -9.3418 -4.1953 24 6 -1.2204 -9.3932 -4.0004 25 8 -1.5582 -8.0395 -3.6295 26 6 -0.5276 -7.5784 -2.7399 27 6 5.1594 -2.8187 -0.9151 28 1 6.0713 -3.1907 -0.4480 29 6 4.2282 -2.2325 0.1156 30 1 -0.4850 0.8400 -0.0004 31 1 4.5582 0.3361 -1.0349 32 1 2.9371 0.3292 -1.7773 33 1 3.5218 -1.7113 -3.0526 34 1 4.6830 -0.4072 -3.3983 35 1 4.9642 -3.2995 -3.8840 36 1 6.4228 -3.8355 -2.9390 37 1 2.9200 -4.9985 -3.7072 38 1 4.1614 -6.1756 -3.2157 39 1 1.4598 -6.8314 -4.4100 40 1 2.7016 -8.0085 -3.9196 41 1 0.5708 -8.9440 -5.1777 42 1 0.7602 -10.3266 -4.0492 43 1 -1.4830 -10.0869 -3.2017 44 1 -1.7184 -9.6724 -4.9289 45 1 -0.8189 -7.7658 -1.7063 46 1 -0.3558 -6.5124 -2.8888 47 1 3.6476 -3.0399 0.5618 48 1 4.8237 -1.7584 0.8957 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001221845460.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:55:28 Heat of formation + Delta-G solvation = -81.278353 kcal Electronic energy + Delta-G solvation = -28712.374199 eV Core-core repulsion = 24768.736544 eV Total energy + Delta-G solvation = -3943.637655 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.89656 -40.61921 -39.58988 -38.19472 -37.25383 -34.02000 -33.90837 -32.72712 -31.46098 -30.46790 -29.05490 -28.11577 -26.37039 -25.47450 -24.75213 -23.42470 -22.81142 -21.74686 -21.33930 -19.34484 -18.73340 -18.11579 -17.76057 -17.72908 -17.30420 -17.19219 -16.86731 -16.62351 -16.38744 -15.99130 -15.54728 -15.38450 -15.06670 -14.91488 -14.44631 -14.32971 -14.15430 -13.88027 -13.85042 -13.50707 -13.35608 -12.92791 -12.81583 -12.68965 -12.65271 -12.57901 -12.27320 -12.19727 -12.12083 -12.07691 -11.64857 -11.56927 -11.42107 -11.30138 -10.79420 -10.75096 -10.66219 -10.48139 -9.59081 -8.88853 -8.18788 -5.52357 1.27362 1.40407 1.51863 1.61635 1.69495 2.39908 2.71925 2.97207 3.02194 3.31931 3.43602 3.47572 3.50674 3.79214 3.86728 3.89428 4.05851 4.13470 4.18491 4.22735 4.29344 4.30558 4.33971 4.36923 4.46534 4.50815 4.58637 4.61724 4.63216 4.73240 4.77150 4.82829 4.83199 4.84391 4.89265 4.98238 5.02143 5.06192 5.14063 5.19936 5.24608 5.55570 5.85422 5.88226 6.08242 6.10742 6.82954 6.95329 7.26572 7.64488 7.97241 9.02563 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.013793 B = 0.003398 C = 0.002907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2029.537948 B = 8239.317034 C = 9628.005412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.963 5.963 2 C -0.040 4.040 3 Si 0.965 3.035 4 H -0.265 1.265 5 H -0.311 1.311 6 H -0.254 1.254 7 C -0.251 4.251 8 H 0.016 0.984 9 N -0.610 5.610 10 C 0.117 3.883 11 C -0.112 4.112 12 C -0.099 4.099 13 H 0.140 0.860 14 C 0.111 3.889 15 N -0.640 5.640 16 C 0.519 3.481 17 O -0.583 6.583 18 C 0.062 3.938 19 O -0.402 6.402 20 C 0.068 3.932 21 C -0.119 4.119 22 H 0.092 0.908 23 C -0.133 4.133 24 C 0.035 3.965 25 O -0.407 6.407 26 C 0.049 3.951 27 C 0.121 3.879 28 H 0.117 0.883 29 C 0.140 3.860 30 H 0.262 0.738 31 H 0.049 0.951 32 H 0.045 0.955 33 H 0.039 0.961 34 H 0.101 0.899 35 H 0.098 0.902 36 H 0.130 0.870 37 H 0.089 0.911 38 H 0.118 0.882 39 H 0.058 0.942 40 H 0.086 0.914 41 H 0.092 0.908 42 H 0.111 0.889 43 H 0.068 0.932 44 H 0.113 0.887 45 H 0.049 0.951 46 H 0.064 0.936 47 H 0.030 0.970 48 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.715 -15.662 -16.301 27.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.609 5.609 2 C -0.234 4.234 3 Si 0.792 3.208 4 H -0.191 1.191 5 H -0.240 1.240 6 H -0.178 1.178 7 C -0.381 4.381 8 H 0.034 0.966 9 N -0.334 5.334 10 C -0.007 4.007 11 C -0.151 4.151 12 C -0.118 4.118 13 H 0.158 0.842 14 C -0.009 4.009 15 N -0.377 5.377 16 C 0.309 3.691 17 O -0.462 6.462 18 C -0.017 4.017 19 O -0.321 6.321 20 C -0.008 4.008 21 C -0.138 4.138 22 H 0.110 0.890 23 C -0.170 4.170 24 C -0.041 4.041 25 O -0.327 6.327 26 C -0.028 4.028 27 C 0.018 3.982 28 H 0.135 0.865 29 C 0.014 3.986 30 H 0.071 0.929 31 H 0.067 0.933 32 H 0.063 0.937 33 H 0.058 0.942 34 H 0.119 0.881 35 H 0.116 0.884 36 H 0.148 0.852 37 H 0.107 0.893 38 H 0.135 0.865 39 H 0.077 0.923 40 H 0.105 0.895 41 H 0.110 0.890 42 H 0.130 0.870 43 H 0.086 0.914 44 H 0.131 0.869 45 H 0.067 0.933 46 H 0.082 0.918 47 H 0.049 0.951 48 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 14.878 -15.751 -15.609 26.704 hybrid contribution -0.719 0.717 0.854 1.327 sum 14.159 -15.034 -14.755 25.381 Atomic orbital electron populations 1.70050 1.08009 1.27407 1.55449 1.26084 0.95922 1.01666 0.99710 0.85600 0.78808 0.78490 0.77883 1.19093 1.24019 1.17779 1.18651 0.87769 0.92686 1.38970 0.96580 1.43871 1.07552 1.37418 1.44576 1.21370 0.97353 0.92133 0.89829 1.21778 0.96988 0.98771 0.97548 1.22886 1.00378 0.95238 0.93288 0.84233 1.23913 0.94620 0.90843 0.91568 1.49970 1.36791 1.33379 1.17596 1.20619 0.79020 0.79697 0.89776 1.90721 1.53193 1.69885 1.32422 1.22154 0.93434 0.92051 0.94057 1.88000 1.56482 1.49513 1.38097 1.22769 0.97567 0.91477 0.89000 1.22557 0.94041 0.96350 1.00806 0.88994 1.23132 0.95369 1.00210 0.98337 1.23851 0.95327 0.83278 1.01638 1.88867 1.47483 1.30490 1.65865 1.23145 0.87301 0.98937 0.93386 1.22524 0.94978 0.87039 0.93704 0.86508 1.20281 0.91971 0.91511 0.94800 0.92900 0.93314 0.93673 0.94203 0.88062 0.88391 0.85226 0.89336 0.86456 0.92345 0.89548 0.88968 0.87049 0.91406 0.86912 0.93300 0.91773 0.95114 0.94890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -65.43 13.97 21.65 0.30 -65.12 16 2 C -0.04 -2.51 5.18 84.86 0.44 -2.07 16 3 Si 0.97 48.30 24.44 68.60 1.68 49.98 16 4 H -0.26 -12.09 6.72 99.48 0.67 -11.42 16 5 H -0.31 -15.85 7.11 99.48 0.71 -15.14 16 6 H -0.25 -11.88 6.73 99.48 0.67 -11.21 16 7 C -0.25 -16.01 9.94 84.03 0.84 -15.17 16 8 H 0.02 1.22 8.02 -2.91 -0.02 1.20 16 9 N -0.61 -30.88 2.75 -707.59 -1.94 -32.82 16 10 C 0.12 4.83 4.18 86.39 0.36 5.19 16 11 C -0.11 -3.28 5.66 30.63 0.17 -3.11 16 12 C -0.10 -2.11 4.39 -10.32 -0.05 -2.15 16 13 H 0.14 1.81 8.14 -2.38 -0.02 1.79 16 14 C 0.11 1.76 7.97 86.33 0.69 2.45 16 15 N -0.64 -18.97 3.34 -822.88 -2.75 -21.72 16 16 C 0.52 19.30 8.07 87.66 0.71 20.01 16 17 O -0.58 -29.79 15.62 15.99 0.25 -29.54 16 18 C 0.06 1.63 6.20 71.24 0.44 2.07 16 19 O -0.40 -12.58 9.62 -129.94 -1.25 -13.83 16 20 C 0.07 1.40 5.03 71.98 0.36 1.76 16 21 C -0.12 -2.48 3.34 -9.80 -0.03 -2.51 16 22 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 23 C -0.13 -1.77 6.71 31.89 0.21 -1.56 16 24 C 0.03 0.59 7.72 72.67 0.56 1.15 16 25 O -0.41 -11.35 11.52 -148.98 -1.72 -13.07 16 26 C 0.05 1.41 7.23 72.36 0.52 1.94 16 27 C 0.12 3.62 4.23 43.74 0.18 3.80 16 28 H 0.12 2.68 8.14 -2.39 -0.02 2.66 16 29 C 0.14 6.13 6.17 85.79 0.53 6.66 16 30 H 0.26 16.67 8.31 -92.71 -0.77 15.90 16 31 H 0.05 1.81 7.31 -2.39 -0.02 1.79 16 32 H 0.05 2.11 4.50 -2.39 -0.01 2.10 16 33 H 0.04 1.38 7.69 -2.38 -0.02 1.36 16 34 H 0.10 2.17 8.14 -2.39 -0.02 2.16 16 35 H 0.10 1.27 7.97 -2.38 -0.02 1.25 16 36 H 0.13 0.99 8.14 -2.39 -0.02 0.97 16 37 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 38 H 0.12 1.94 8.14 -2.39 -0.02 1.92 16 39 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 40 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 41 H 0.09 1.03 7.87 -2.39 -0.02 1.01 16 42 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 43 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 44 H 0.11 1.42 8.14 -2.38 -0.02 1.40 16 45 H 0.05 1.48 8.14 -2.38 -0.02 1.46 16 46 H 0.06 2.17 7.60 -2.39 -0.02 2.16 16 47 H 0.03 1.63 6.33 -2.39 -0.02 1.62 16 48 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 Total: -1.00 -96.63 373.42 1.37 -95.25 By element: Atomic # 1 Polarization: 11.54 SS G_CDS: 0.86 Total: 12.40 kcal Atomic # 6 Polarization: 12.52 SS G_CDS: 5.94 Total: 18.46 kcal Atomic # 7 Polarization: -115.27 SS G_CDS: -4.39 Total: -119.66 kcal Atomic # 8 Polarization: -53.72 SS G_CDS: -2.72 Total: -56.44 kcal Atomic # 14 Polarization: 48.30 SS G_CDS: 1.68 Total: 49.98 kcal Total: -96.63 1.37 -95.25 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001221845460.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.976 kcal (2) G-P(sol) polarization free energy of solvation -96.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds