Wall clock time and date at job start Tue Mar 31 2020 13:37:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86808 * 119.99874 * 2 1 4 4 H 1.48502 * 109.47051 * 180.02562 * 3 2 1 5 5 H 1.48493 * 109.47120 * 300.00580 * 3 2 1 6 6 H 1.48503 * 109.46665 * 60.00603 * 3 2 1 7 7 C 1.37876 * 120.00618 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00304 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99694 * 359.97438 * 7 2 1 10 10 H 1.09001 * 109.49983 * 60.06279 * 9 7 2 11 11 C 1.53039 * 109.52712 * 180.14809 * 9 7 2 12 12 C 1.53037 * 109.53963 * 181.32948 * 11 9 7 13 13 C 1.53627 * 109.24537 * 298.51019 * 12 11 9 14 14 N 1.46930 * 108.53916 * 54.85812 * 13 12 11 15 15 C 1.34768 * 120.63193 * 126.37474 * 14 13 12 16 16 O 1.21352 * 120.00381 * 188.42620 * 15 14 13 17 17 C 1.49457 * 120.00026 * 8.41554 * 15 14 13 18 18 O 1.21352 * 119.99905 * 6.75284 * 17 15 14 19 19 N 1.34781 * 120.00040 * 186.74927 * 17 15 14 20 20 C 1.46491 * 119.99807 * 180.02562 * 19 17 15 21 21 C 1.53001 * 109.47085 * 179.72474 * 20 19 17 22 22 C 1.53171 * 109.54272 * 294.82029 * 21 20 19 23 23 C 1.53106 * 109.15735 * 183.24171 * 22 21 20 24 24 O 1.42900 * 109.48506 * 57.47403 * 23 22 21 25 25 C 1.42903 * 114.09909 * 298.88853 * 24 23 22 26 26 C 1.53088 * 109.41496 * 61.16080 * 25 24 23 27 27 C 1.46923 * 118.73801 * 306.09193 * 14 13 12 28 28 H 0.96992 * 120.00376 * 359.97438 * 1 2 3 29 29 H 1.08999 * 109.45892 * 301.35358 * 11 9 7 30 30 H 1.08998 * 109.45808 * 61.32519 * 11 9 7 31 31 H 1.09003 * 109.49635 * 58.58940 * 12 11 9 32 32 H 1.09002 * 109.50002 * 178.68539 * 12 11 9 33 33 H 1.08999 * 109.73725 * 295.12120 * 13 12 11 34 34 H 1.08996 * 109.66601 * 174.55020 * 13 12 11 35 35 H 0.97002 * 119.99457 * 359.72484 * 19 17 15 36 36 H 1.09007 * 109.47298 * 299.72037 * 20 19 17 37 37 H 1.09002 * 109.47583 * 59.72346 * 20 19 17 38 38 H 1.09001 * 109.54291 * 55.00101 * 21 20 19 39 39 H 1.09000 * 109.52260 * 303.05893 * 22 21 20 40 40 H 1.08997 * 109.52448 * 63.24323 * 22 21 20 41 41 H 1.08997 * 109.40340 * 297.49181 * 23 22 21 42 42 H 1.09000 * 109.49325 * 177.51098 * 23 22 21 43 43 H 1.08997 * 109.48024 * 301.17735 * 25 24 23 44 44 H 1.08998 * 109.48727 * 181.14943 * 25 24 23 45 45 H 1.08998 * 109.52279 * 182.48744 * 26 25 24 46 46 H 1.09002 * 109.57478 * 62.32487 * 26 25 24 47 47 H 1.08994 * 109.58875 * 173.65193 * 27 14 13 48 48 H 1.09006 * 109.58945 * 293.93448 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8902 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 1 0.6248 -2.5577 -0.8907 11 6 2.2446 -3.6632 0.0025 12 6 1.4801 -4.9886 -0.0309 13 6 0.6027 -5.0989 1.2253 14 7 -0.2560 -3.9091 1.3013 15 6 -1.5926 -4.0335 1.4213 16 8 -2.3038 -3.0545 1.3297 17 6 -2.1990 -5.3773 1.6670 18 8 -1.4852 -6.3352 1.8804 19 7 -3.5386 -5.5251 1.6516 20 6 -4.1329 -6.8421 1.8930 21 6 -5.6577 -6.7333 1.8276 22 6 -6.1581 -5.8515 2.9757 23 6 -7.6885 -5.8144 2.9504 24 8 -8.1993 -7.1456 3.0460 25 6 -7.8026 -8.0012 1.9724 26 6 -6.2771 -8.1280 1.9597 27 6 0.3706 -2.5812 1.2504 28 1 -0.4850 0.8399 0.0004 29 1 2.8887 -3.5933 -0.8740 30 1 2.8537 -3.6184 0.9053 31 1 0.8517 -5.0237 -0.9209 32 1 2.1885 -5.8168 -0.0523 33 1 1.2344 -5.1509 2.1121 34 1 -0.0169 -5.9934 1.1626 35 1 -4.1092 -4.7586 1.4850 36 1 -3.7858 -7.5423 1.1331 37 1 -3.8362 -7.1995 2.8791 38 1 -5.9512 -6.2928 0.8748 39 1 -5.8207 -6.2649 3.9262 40 1 -5.7659 -4.8415 2.8570 41 1 -8.0244 -5.3623 2.0172 42 1 -8.0520 -5.2243 3.7917 43 1 -8.1400 -7.5777 1.0264 44 1 -8.2482 -8.9865 2.1090 45 1 -5.9698 -8.7446 1.1150 46 1 -5.9412 -8.5892 2.8886 47 1 -0.4022 -1.8140 1.2042 48 1 0.9817 -2.4311 2.1405 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001261685271.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:37:26 Heat of formation + Delta-G solvation = -141.287446 kcal Electronic energy + Delta-G solvation = -28230.217019 eV Core-core repulsion = 24283.977175 eV Total energy + Delta-G solvation = -3946.239845 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.95669 -40.49967 -39.66791 -38.50815 -36.95368 -35.25477 -34.12108 -33.42415 -32.01682 -31.57190 -29.04248 -27.39308 -26.72157 -24.70219 -24.49764 -23.53501 -23.06889 -21.69528 -21.09592 -20.40314 -18.85172 -18.24596 -17.93035 -17.21691 -17.00766 -16.95568 -16.81079 -16.45823 -16.08224 -15.80358 -15.62773 -15.41758 -15.00790 -14.83242 -14.64090 -14.43918 -14.39820 -13.96817 -13.74255 -13.48955 -13.36383 -13.09062 -12.98946 -12.89655 -12.47362 -12.30034 -12.25273 -12.16021 -12.04662 -11.76248 -11.66053 -11.55555 -11.23446 -11.13419 -10.98505 -10.55441 -10.51586 -10.36376 -10.08136 -9.54728 -8.11742 -6.28446 0.35905 1.34411 1.41721 1.42692 1.54101 2.13856 2.41132 2.57572 2.99559 3.16232 3.31897 3.56753 3.68861 3.82225 4.07143 4.12458 4.16771 4.30151 4.33013 4.34448 4.47191 4.54722 4.59054 4.66132 4.70152 4.73722 4.79819 4.82041 4.82489 4.86666 4.94626 5.05845 5.12928 5.14601 5.14878 5.22718 5.25523 5.32953 5.38004 5.49165 5.57241 5.84130 5.93817 5.99204 6.28746 6.29957 6.43023 6.72338 6.83666 6.98493 7.41426 8.92110 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.020500 B = 0.002616 C = 0.002370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1365.514417 B =10700.344272 C =11809.917664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.011 3.989 3 Si 0.958 3.042 4 H -0.263 1.263 5 H -0.282 1.282 6 H -0.281 1.281 7 C -0.535 4.535 8 H 0.062 0.938 9 C 0.039 3.961 10 H -0.010 1.010 11 C -0.107 4.107 12 C -0.125 4.125 13 C 0.071 3.929 14 N -0.577 5.577 15 C 0.484 3.516 16 O -0.557 6.557 17 C 0.519 3.481 18 O -0.523 6.523 19 N -0.687 5.687 20 C 0.124 3.876 21 C -0.097 4.097 22 C -0.154 4.154 23 C 0.059 3.941 24 O -0.405 6.405 25 C 0.056 3.944 26 C -0.143 4.143 27 C 0.120 3.880 28 H 0.261 0.739 29 H 0.054 0.946 30 H 0.057 0.943 31 H 0.049 0.951 32 H 0.100 0.900 33 H 0.073 0.927 34 H 0.139 0.861 35 H 0.416 0.584 36 H 0.082 0.918 37 H 0.073 0.927 38 H 0.088 0.912 39 H 0.069 0.931 40 H 0.074 0.926 41 H 0.059 0.941 42 H 0.099 0.901 43 H 0.059 0.941 44 H 0.108 0.892 45 H 0.094 0.906 46 H 0.074 0.926 47 H 0.086 0.914 48 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.762 -17.858 4.089 22.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.188 4.188 3 Si 0.784 3.216 4 H -0.187 1.187 5 H -0.208 1.208 6 H -0.207 1.207 7 C -0.573 4.573 8 H 0.080 0.920 9 C 0.020 3.980 10 H 0.008 0.992 11 C -0.145 4.145 12 C -0.163 4.163 13 C -0.050 4.050 14 N -0.308 5.308 15 C 0.266 3.734 16 O -0.437 6.437 17 C 0.300 3.700 18 O -0.402 6.402 19 N -0.340 5.340 20 C 0.002 3.998 21 C -0.116 4.116 22 C -0.192 4.192 23 C -0.017 4.017 24 O -0.324 6.324 25 C -0.020 4.020 26 C -0.181 4.181 27 C -0.001 4.001 28 H 0.070 0.930 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.068 0.932 32 H 0.118 0.882 33 H 0.091 0.909 34 H 0.156 0.844 35 H 0.253 0.747 36 H 0.100 0.900 37 H 0.092 0.908 38 H 0.106 0.894 39 H 0.088 0.912 40 H 0.092 0.908 41 H 0.077 0.923 42 H 0.117 0.883 43 H 0.077 0.923 44 H 0.126 0.874 45 H 0.113 0.887 46 H 0.092 0.908 47 H 0.104 0.896 48 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -12.894 -17.988 4.344 22.554 hybrid contribution 0.405 1.941 -0.336 2.011 sum -12.489 -16.046 4.008 20.725 Atomic orbital electron populations 1.70060 1.07288 1.27301 1.50541 1.25876 0.95629 1.02826 0.94518 0.85498 0.79208 0.79427 0.77483 1.18662 1.20831 1.20720 1.21511 0.93316 0.91300 1.51183 0.91965 1.18902 0.93071 0.93876 0.92179 0.99201 1.21554 0.97760 0.94109 1.01041 1.22001 0.98867 0.98310 0.97154 1.23014 0.94666 0.88728 0.98544 1.48462 1.05352 1.09814 1.67185 1.20568 0.83643 0.89807 0.79333 1.90746 1.60957 1.40814 1.51137 1.19902 0.83996 0.87968 0.78132 1.90452 1.59737 1.41064 1.48944 1.45835 1.05158 1.13723 1.69247 1.21688 0.92853 0.82701 1.02555 1.21438 0.92418 0.97761 0.99971 1.22286 0.97025 1.00748 0.99156 1.22641 0.92562 0.83731 1.02803 1.87916 1.73497 1.22604 1.48417 1.22738 0.93914 0.95332 0.90055 1.22142 0.96171 0.95571 1.04190 1.21951 0.97603 0.81960 0.98608 0.92977 0.92728 0.92433 0.93234 0.88166 0.90913 0.84407 0.74690 0.90001 0.90822 0.89361 0.91201 0.90768 0.92316 0.88273 0.92321 0.87443 0.88738 0.90769 0.89614 0.93721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.37 11.39 21.45 0.24 -54.13 16 2 C 0.01 0.62 5.30 84.66 0.45 1.06 16 3 Si 0.96 43.81 29.54 68.60 2.03 45.84 16 4 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 5 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 6 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 7 C -0.53 -29.36 8.57 25.60 0.22 -29.14 16 8 H 0.06 3.30 7.74 -2.91 -0.02 3.28 16 9 C 0.04 1.98 2.25 -11.46 -0.03 1.95 16 10 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 11 C -0.11 -4.29 5.11 30.62 0.16 -4.14 16 12 C -0.13 -4.14 6.10 30.82 0.19 -3.95 16 13 C 0.07 2.42 6.01 86.51 0.52 2.94 16 14 N -0.58 -24.24 2.97 -819.62 -2.43 -26.67 16 15 C 0.48 19.69 7.73 87.27 0.67 20.36 16 16 O -0.56 -26.22 15.93 -3.25 -0.05 -26.27 16 17 C 0.52 16.35 7.74 87.27 0.68 17.03 16 18 O -0.52 -16.72 13.18 -3.25 -0.04 -16.76 16 19 N -0.69 -16.28 5.31 -464.40 -2.46 -18.75 16 20 C 0.12 2.12 5.07 86.38 0.44 2.55 16 21 C -0.10 -1.26 2.31 -10.68 -0.02 -1.28 16 22 C -0.15 -2.23 5.26 30.69 0.16 -2.06 16 23 C 0.06 0.83 6.84 72.02 0.49 1.32 16 24 O -0.41 -6.77 10.77 -148.98 -1.60 -8.37 16 25 C 0.06 0.63 6.84 72.01 0.49 1.12 16 26 C -0.14 -1.47 5.43 30.68 0.17 -1.31 16 27 C 0.12 6.02 5.41 86.37 0.47 6.49 16 28 H 0.26 14.88 8.31 -92.71 -0.77 14.11 16 29 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 30 H 0.06 2.21 8.14 -2.39 -0.02 2.20 16 31 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.10 2.57 8.14 -2.39 -0.02 2.55 16 33 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 34 H 0.14 4.44 4.30 -48.53 -0.21 4.23 16 35 H 0.42 9.56 7.18 -92.71 -0.67 8.89 16 36 H 0.08 1.34 8.14 -2.38 -0.02 1.32 16 37 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 39 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.07 1.14 7.29 -2.39 -0.02 1.12 16 41 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 42 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 43 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 44 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 45 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 46 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 47 H 0.09 5.00 5.12 -2.39 -0.01 4.98 16 48 H 0.04 2.21 8.14 -2.38 -0.02 2.19 16 Total: -1.00 -69.06 374.72 0.82 -68.23 By element: Atomic # 1 Polarization: 23.82 SS G_CDS: 0.09 Total: 23.91 kcal Atomic # 6 Polarization: 7.91 SS G_CDS: 5.05 Total: 12.96 kcal Atomic # 7 Polarization: -94.89 SS G_CDS: -4.65 Total: -99.54 kcal Atomic # 8 Polarization: -49.70 SS G_CDS: -1.70 Total: -51.40 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.84 kcal Total: -69.06 0.82 -68.23 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261685271.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.053 kcal (2) G-P(sol) polarization free energy of solvation -69.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds