Wall clock time and date at job start Tue Mar 31 2020 13:52:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 119.99786 * 2 1 4 4 H 1.48500 * 109.46959 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46960 * 299.99779 * 3 2 1 6 6 H 1.48498 * 109.47679 * 59.99756 * 3 2 1 7 7 C 1.37869 * 120.00037 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00088 * 180.27259 * 7 2 1 9 9 C 1.50699 * 120.00263 * 0.02562 * 7 2 1 10 10 C 1.53034 * 109.46097 * 300.06684 * 9 7 2 11 11 C 1.53191 * 109.31727 * 178.60994 * 10 9 7 12 12 N 1.46928 * 108.76914 * 54.63491 * 11 10 9 13 13 C 1.34775 * 120.62812 * 126.41653 * 12 11 10 14 14 O 1.21354 * 120.00156 * 172.99705 * 13 12 11 15 15 C 1.49450 * 120.00218 * 352.99671 * 13 12 11 16 16 O 1.21348 * 120.00032 * 353.48359 * 15 13 12 17 17 N 1.34775 * 120.00022 * 173.48570 * 15 13 12 18 18 C 1.46507 * 119.99793 * 179.97438 * 17 15 13 19 19 C 1.52996 * 109.46935 * 180.02562 * 18 17 15 20 20 H 1.08995 * 109.48406 * 60.02176 * 19 18 17 21 21 C 1.53094 * 109.48085 * 180.02562 * 19 18 17 22 22 C 1.53175 * 109.16539 * 177.58880 * 21 19 18 23 23 C 1.53172 * 109.03671 * 303.01913 * 22 21 19 24 24 C 1.53095 * 109.16495 * 56.97723 * 23 22 21 25 25 O 1.42898 * 109.41595 * 302.39202 * 24 23 22 26 26 C 1.46921 * 118.74266 * 306.38875 * 12 11 10 27 27 C 1.53036 * 109.46209 * 179.97438 * 9 7 2 28 28 H 0.97005 * 119.99758 * 359.97438 * 1 2 3 29 29 H 1.09004 * 109.45854 * 60.02274 * 9 7 2 30 30 H 1.09005 * 109.49370 * 298.56721 * 10 9 7 31 31 H 1.09001 * 109.49645 * 58.65967 * 10 9 7 32 32 H 1.08993 * 109.58520 * 294.85335 * 11 10 9 33 33 H 1.09001 * 109.58895 * 174.41911 * 11 10 9 34 34 H 0.96995 * 120.00337 * 359.97438 * 17 15 13 35 35 H 1.08998 * 109.46881 * 299.99574 * 18 17 15 36 36 H 1.09000 * 109.47093 * 59.99700 * 18 17 15 37 37 H 1.09005 * 109.52099 * 297.49422 * 21 19 18 38 38 H 1.09001 * 109.52429 * 57.67831 * 21 19 18 39 39 H 1.08996 * 109.54545 * 183.14706 * 22 21 19 40 40 H 1.09007 * 109.54583 * 62.88462 * 22 21 19 41 41 H 1.08999 * 109.52441 * 297.07507 * 23 22 21 42 42 H 1.08997 * 109.57724 * 176.91758 * 23 22 21 43 43 H 1.09001 * 109.48348 * 182.40692 * 24 23 22 44 44 H 1.08999 * 109.48508 * 62.38416 * 24 23 22 45 45 H 1.09000 * 109.58781 * 293.82589 * 26 12 11 46 46 H 1.09002 * 109.59225 * 173.40041 * 26 12 11 47 47 H 1.09003 * 109.49927 * 301.33890 * 27 9 7 48 48 H 1.09001 * 109.49798 * 61.43179 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2126 6 1 1.8904 2.3966 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0050 9 6 1.2511 -2.4991 0.0005 10 6 0.3696 -2.5790 1.2490 11 6 -0.4208 -3.8911 1.2282 12 7 0.5220 -5.0086 1.0826 13 6 0.5108 -6.0347 1.9564 14 8 1.2040 -7.0103 1.7556 15 6 -0.3554 -5.9710 3.1726 16 8 -0.9573 -4.9508 3.4362 17 7 -0.4680 -7.0467 3.9767 18 6 -1.3167 -6.9842 5.1693 19 6 -1.2684 -8.3271 5.9007 20 1 -0.2419 -8.5431 6.1967 21 6 -2.1556 -8.2622 7.1466 22 6 -2.1497 -9.6281 7.8399 23 6 -2.6200 -10.6947 6.8463 24 6 -1.7148 -10.6657 5.6119 25 8 -1.7422 -9.3594 5.0334 26 6 1.4768 -4.9866 -0.0339 27 6 2.2458 -3.6621 0.0005 28 1 -0.4850 0.8401 0.0004 29 1 0.6251 -2.5570 -0.8900 30 1 0.9969 -2.5460 2.1398 31 1 -0.3229 -1.7373 1.2598 32 1 -1.1145 -3.8865 0.3875 33 1 -0.9743 -3.9991 2.1610 34 1 0.0128 -7.8623 3.7660 35 1 -0.9555 -6.1972 5.8313 36 1 -2.3433 -6.7677 4.8737 37 1 -1.7697 -7.5054 7.8296 38 1 -3.1743 -8.0059 6.8554 39 1 -2.8234 -9.6052 8.6964 40 1 -1.1394 -9.8624 8.1753 41 1 -3.6480 -10.4877 6.5490 42 1 -2.5671 -11.6780 7.3138 43 1 -2.0708 -11.3937 4.8829 44 1 -0.6941 -10.9129 5.9037 45 1 0.9377 -5.0713 -0.9774 46 1 2.1752 -5.8174 0.0661 47 1 2.8884 -3.5912 -0.8771 48 1 2.8557 -3.6192 0.9029 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001321986195.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:52:54 Heat of formation + Delta-G solvation = -115.022009 kcal Electronic energy + Delta-G solvation = -28071.748445 eV Core-core repulsion = 24126.647556 eV Total energy + Delta-G solvation = -3945.100890 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.68106 -39.82311 -38.35757 -36.95849 -35.21648 -34.05900 -33.41266 -31.88623 -31.17002 -29.98343 -27.83146 -26.42410 -24.90393 -24.06247 -22.71753 -22.30844 -21.72107 -20.82631 -20.10639 -18.84083 -17.42824 -16.90894 -16.72999 -16.32515 -16.22929 -15.79965 -15.39952 -15.07605 -14.90828 -14.58077 -14.49100 -14.29702 -13.78293 -13.43996 -13.15985 -13.02558 -12.90037 -12.84335 -12.69306 -12.51987 -12.18090 -11.74959 -11.64697 -11.53098 -11.36259 -11.17616 -10.93748 -10.81628 -10.75321 -10.52338 -10.30818 -10.02855 -9.88869 -9.64776 -9.28718 -9.17683 -9.13189 -8.47351 -8.27230 -8.03350 -5.97049 -4.03408 1.67410 2.55553 3.28628 3.30772 3.38987 3.42809 3.48862 3.80752 4.24219 4.37537 4.39618 4.45230 4.51617 4.63216 4.70508 4.74943 4.99537 5.13731 5.26242 5.28113 5.32660 5.36164 5.48087 5.51556 5.59260 5.65188 5.69362 5.83657 5.88111 5.94174 6.09900 6.15876 6.30306 6.50924 6.66614 6.77220 6.81821 6.86083 7.03319 7.19039 7.23124 7.38273 7.71543 7.84899 7.96691 8.02261 8.13879 8.31265 8.46499 9.00075 9.61245 11.08360 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.026204 B = 0.002381 C = 0.002251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.290701 B =11759.273285 C =12438.684869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.060 3.940 3 Si 0.890 3.110 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.511 4.511 8 H 0.055 0.945 9 C 0.044 3.956 10 C -0.117 4.117 11 C 0.045 3.955 12 N -0.560 5.560 13 C 0.501 3.499 14 O -0.545 6.545 15 C 0.510 3.490 16 O -0.502 6.502 17 N -0.698 5.698 18 C 0.126 3.874 19 C 0.078 3.922 20 H 0.068 0.932 21 C -0.148 4.148 22 C -0.122 4.122 23 C -0.158 4.158 24 C 0.060 3.940 25 O -0.374 6.374 26 C 0.107 3.893 27 C -0.123 4.123 28 H 0.259 0.741 29 H 0.027 0.973 30 H 0.037 0.963 31 H 0.104 0.896 32 H 0.056 0.944 33 H 0.140 0.860 34 H 0.415 0.585 35 H 0.088 0.912 36 H 0.081 0.919 37 H 0.079 0.921 38 H 0.077 0.923 39 H 0.069 0.931 40 H 0.064 0.936 41 H 0.072 0.928 42 H 0.073 0.927 43 H 0.095 0.905 44 H 0.051 0.949 45 H 0.066 0.934 46 H 0.079 0.921 47 H 0.063 0.937 48 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.449 -20.413 14.249 25.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.140 4.140 3 Si 0.718 3.282 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.549 4.549 8 H 0.073 0.927 9 C 0.026 3.974 10 C -0.155 4.155 11 C -0.075 4.075 12 N -0.292 5.292 13 C 0.282 3.718 14 O -0.425 6.425 15 C 0.292 3.708 16 O -0.378 6.378 17 N -0.352 5.352 18 C 0.003 3.997 19 C 0.020 3.980 20 H 0.085 0.915 21 C -0.187 4.187 22 C -0.159 4.159 23 C -0.196 4.196 24 C -0.016 4.016 25 O -0.294 6.294 26 C -0.014 4.014 27 C -0.161 4.161 28 H 0.069 0.931 29 H 0.045 0.955 30 H 0.055 0.945 31 H 0.122 0.878 32 H 0.074 0.926 33 H 0.157 0.843 34 H 0.251 0.749 35 H 0.106 0.894 36 H 0.100 0.900 37 H 0.097 0.903 38 H 0.096 0.904 39 H 0.088 0.912 40 H 0.083 0.917 41 H 0.091 0.909 42 H 0.091 0.909 43 H 0.113 0.887 44 H 0.069 0.931 45 H 0.084 0.916 46 H 0.098 0.902 47 H 0.081 0.919 48 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -5.737 -19.998 14.126 25.147 hybrid contribution 0.735 0.571 0.141 0.941 sum -5.002 -19.428 14.266 24.617 Atomic orbital electron populations 1.69863 1.05824 1.26287 1.50903 1.24968 0.94867 0.99039 0.95172 0.86568 0.80135 0.83947 0.77520 1.19885 1.21098 1.21071 1.21227 0.92904 0.90589 1.50225 0.92706 1.18703 0.92706 0.91596 0.94403 1.21921 0.99828 0.94884 0.98877 1.23477 0.91893 0.86418 1.05742 1.48225 1.34615 1.20480 1.25831 1.19828 0.83851 0.83828 0.84253 1.90691 1.44103 1.31717 1.75999 1.20423 0.82075 0.83564 0.84707 1.90404 1.46099 1.29382 1.71952 1.45650 1.48339 1.15853 1.25351 1.21507 0.96294 0.95412 0.86532 1.22358 0.97542 0.87785 0.90323 0.91453 1.22133 1.01441 0.98265 0.96816 1.21573 1.01862 0.94337 0.98157 1.22208 1.00904 0.99650 0.96818 1.22590 0.98772 0.84731 0.95531 1.88000 1.86067 1.15520 1.39764 1.21880 0.91664 1.00004 0.87884 1.22020 0.98925 0.94056 1.01069 0.93053 0.95495 0.94457 0.87803 0.92561 0.84341 0.74884 0.89366 0.90044 0.90273 0.90421 0.91184 0.91702 0.90911 0.90859 0.88662 0.93066 0.91573 0.90223 0.91888 0.92924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.21 11.30 55.43 0.63 -24.58 16 2 C 0.06 1.67 5.30 -17.82 -0.09 1.57 16 3 Si 0.89 21.33 29.54 -169.99 -5.02 16.30 16 4 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 6 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 7 C -0.51 -13.99 8.56 -34.44 -0.29 -14.28 16 8 H 0.05 1.49 7.74 -52.49 -0.41 1.09 16 9 C 0.04 1.10 2.06 -91.74 -0.19 0.91 16 10 C -0.12 -2.78 5.15 -26.61 -0.14 -2.92 16 11 C 0.04 0.91 6.27 -3.71 -0.02 0.89 16 12 N -0.56 -10.83 2.97 -173.28 -0.52 -11.35 16 13 C 0.50 9.13 7.74 -11.59 -0.09 9.04 16 14 O -0.55 -10.38 15.94 5.49 0.09 -10.29 16 15 C 0.51 8.27 7.78 -11.59 -0.09 8.18 16 16 O -0.50 -9.07 13.10 5.50 0.07 -9.00 16 17 N -0.70 -8.80 5.44 -60.73 -0.33 -9.13 16 18 C 0.13 1.26 5.37 -4.04 -0.02 1.24 16 19 C 0.08 0.62 2.73 -26.68 -0.07 0.54 16 20 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 21 C -0.15 -0.92 5.42 -26.59 -0.14 -1.07 16 22 C -0.12 -0.65 6.03 -26.55 -0.16 -0.81 16 23 C -0.16 -0.86 6.14 -26.59 -0.16 -1.03 16 24 C 0.06 0.40 6.84 37.21 0.25 0.66 16 25 O -0.37 -3.49 10.15 -35.23 -0.36 -3.85 16 26 C 0.11 2.01 6.41 -3.71 -0.02 1.99 16 27 C -0.12 -2.57 5.30 -26.61 -0.14 -2.71 16 28 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 29 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 30 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.10 2.75 6.03 -51.93 -0.31 2.44 16 32 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 33 H 0.14 2.81 3.78 -56.76 -0.21 2.59 16 34 H 0.41 4.94 7.84 -40.82 -0.32 4.62 16 35 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 37 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 38 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 39 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 40 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 41 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 43 H 0.10 0.56 8.14 -51.93 -0.42 0.13 16 44 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 45 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 46 H 0.08 1.42 7.06 -51.93 -0.37 1.06 16 47 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 48 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 LS Contribution 376.04 15.07 5.67 5.67 Total: -1.00 -30.81 376.04 -9.10 -39.92 By element: Atomic # 1 Polarization: 12.04 SS G_CDS: -7.94 Total: 4.10 kcal Atomic # 6 Polarization: 3.59 SS G_CDS: -1.39 Total: 2.20 kcal Atomic # 7 Polarization: -44.84 SS G_CDS: -0.22 Total: -45.06 kcal Atomic # 8 Polarization: -22.93 SS G_CDS: -0.20 Total: -23.13 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -30.81 -9.10 -39.92 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321986195.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.104 kcal (2) G-P(sol) polarization free energy of solvation -30.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds