Wall clock time and date at job start Tue Mar 31 2020 13:51:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 119.99894 * 2 1 4 4 H 1.48505 * 109.47011 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46836 * 299.99788 * 3 2 1 6 6 H 1.48497 * 109.47104 * 59.99737 * 3 2 1 7 7 C 1.37871 * 119.99871 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00440 * 169.44615 * 7 2 1 9 9 C 1.50701 * 120.00106 * 349.44614 * 7 2 1 10 10 C 1.53006 * 115.54963 * 325.11099 * 9 7 2 11 11 N 1.46498 * 109.46905 * 306.41345 * 10 9 7 12 12 C 1.34774 * 119.99775 * 183.68862 * 11 10 9 13 13 O 1.21358 * 120.00189 * 5.78836 * 12 11 10 14 14 C 1.49453 * 120.00283 * 185.78127 * 12 11 10 15 15 O 1.21356 * 119.99524 * 355.01567 * 14 12 11 16 16 N 1.34770 * 120.00100 * 175.01321 * 14 12 11 17 17 C 1.46505 * 119.99879 * 179.97438 * 16 14 12 18 18 C 1.53003 * 109.47376 * 180.02562 * 17 16 14 19 19 C 1.52998 * 109.47298 * 180.02562 * 18 17 16 20 20 H 1.08999 * 109.48061 * 305.02156 * 19 18 17 21 21 C 1.53089 * 109.47807 * 185.00022 * 19 18 17 22 22 C 1.53182 * 109.21370 * 182.37321 * 21 19 18 23 23 C 1.53316 * 108.96242 * 56.95298 * 22 21 19 24 24 C 1.53085 * 109.19719 * 303.05687 * 23 22 21 25 25 O 1.42900 * 109.48177 * 65.05748 * 19 18 17 26 26 C 1.53003 * 117.50212 * 110.78090 * 9 7 2 27 27 C 1.53008 * 117.50117 * 179.44301 * 9 7 2 28 28 H 0.97000 * 120.00350 * 5.02593 * 1 2 3 29 29 H 1.09006 * 109.47041 * 186.41650 * 10 9 7 30 30 H 1.08998 * 109.47027 * 66.42018 * 10 9 7 31 31 H 0.97000 * 120.00069 * 3.69602 * 11 10 9 32 32 H 0.97002 * 120.00719 * 0.02562 * 16 14 12 33 33 H 1.09006 * 109.46785 * 60.00408 * 17 16 14 34 34 H 1.08997 * 109.47439 * 300.00572 * 17 16 14 35 35 H 1.08999 * 109.46602 * 59.99808 * 18 17 16 36 36 H 1.09006 * 109.46679 * 300.00667 * 18 17 16 37 37 H 1.08996 * 109.52432 * 302.31059 * 21 19 18 38 38 H 1.09003 * 109.52300 * 62.44029 * 21 19 18 39 39 H 1.09001 * 109.54375 * 176.87990 * 22 21 19 40 40 H 1.08997 * 109.54212 * 297.14753 * 22 21 19 41 41 H 1.08997 * 109.50455 * 183.13969 * 23 22 21 42 42 H 1.08997 * 109.55674 * 63.00903 * 23 22 21 43 43 H 1.09004 * 109.48134 * 297.62704 * 24 23 22 44 44 H 1.08993 * 109.49043 * 177.59744 * 24 23 22 45 45 H 1.08992 * 117.50017 * 215.00688 * 26 9 7 46 46 H 1.09001 * 117.49450 * 0.02718 * 26 9 7 47 47 H 1.09000 * 117.49379 * 359.97438 * 27 9 7 48 48 H 1.08996 * 117.49738 * 144.97340 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8903 2.3964 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0708 -1.2021 -0.1708 9 6 1.2701 -2.4880 0.2402 10 6 0.1014 -2.4109 1.2247 11 7 0.5626 -1.8230 2.4849 12 6 -0.2814 -1.7241 3.5309 13 8 -1.3891 -2.2156 3.4655 14 6 0.1467 -1.0093 4.7716 15 8 1.2836 -0.5969 4.8725 16 7 -0.7297 -0.8226 5.7782 17 6 -0.3098 -0.1223 6.9947 18 6 -1.4854 -0.0464 7.9711 19 6 -1.0470 0.6854 9.2412 20 1 -0.1668 0.1955 9.6576 21 6 -2.1828 0.6526 10.2670 22 6 -1.7599 1.4374 11.5127 23 6 -1.3893 2.8664 11.0992 24 6 -0.2841 2.8137 10.0412 25 8 -0.7321 2.0428 8.9244 26 6 1.1380 -3.4542 -0.9388 27 6 2.0890 -3.7802 0.2155 28 1 -0.4851 0.8368 -0.0736 29 1 -0.2835 -3.4136 1.4110 30 1 -0.6893 -1.7909 0.8023 31 1 1.4753 -1.5049 2.5663 32 1 -1.6384 -1.1525 5.6978 33 1 0.0164 0.8859 6.7392 34 1 0.5139 -0.6639 7.4597 35 1 -1.8112 -1.0547 8.2264 36 1 -2.3094 0.4949 7.5062 37 1 -3.0757 1.1061 9.8366 38 1 -2.3954 -0.3805 10.5422 39 1 -2.5851 1.4644 12.2243 40 1 -0.8967 0.9554 11.9716 41 1 -1.0337 3.4167 11.9703 42 1 -2.2657 3.3656 10.6860 43 1 0.6061 2.3518 10.4681 44 1 -0.0467 3.8255 9.7127 45 1 0.2186 -4.0348 -1.0131 46 1 1.5827 -3.1541 -1.8877 47 1 3.1589 -3.6944 0.0256 48 1 1.7955 -4.5752 0.9010 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001323777207.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:51:51 Heat of formation + Delta-G solvation = -110.349741 kcal Electronic energy + Delta-G solvation = -27493.429011 eV Core-core repulsion = 23548.530726 eV Total energy + Delta-G solvation = -3944.898285 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.09452 -39.68670 -37.99428 -36.65229 -35.57375 -33.97016 -33.30009 -32.62361 -32.16569 -29.35983 -26.83065 -25.67831 -25.27783 -24.08425 -22.57366 -21.67575 -21.21948 -20.59705 -19.63346 -19.33873 -17.90892 -16.85090 -16.59928 -16.22460 -16.03421 -15.51331 -15.16653 -14.96193 -14.76556 -14.69948 -14.48067 -14.24785 -13.96813 -13.66642 -13.24076 -13.07144 -12.95103 -12.59906 -12.51354 -12.04914 -11.81111 -11.66861 -11.52276 -11.50513 -11.32042 -11.15359 -11.04349 -10.98271 -10.77344 -10.62019 -10.49461 -10.27266 -9.75258 -9.62779 -9.16817 -9.02516 -8.93202 -8.84817 -8.30351 -7.98651 -6.08889 -4.17986 2.04707 2.89607 3.25636 3.36696 3.38787 3.45148 3.87715 4.18866 4.32499 4.37082 4.41626 4.46926 4.54566 4.78436 4.88565 4.93341 4.95839 5.01832 5.13156 5.27090 5.28592 5.35557 5.39148 5.49104 5.51209 5.54861 5.63026 5.71335 5.80779 5.93327 5.96504 5.98102 6.27261 6.43708 6.51066 6.57774 6.66910 6.85310 6.94231 7.02232 7.23163 7.30025 7.47623 7.50868 7.88458 8.09625 8.29471 8.41916 8.80122 8.84380 9.43744 10.88620 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.017971 B = 0.002518 C = 0.002310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1557.678635 B =11118.399860 C =12119.867372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.871 5.871 2 C 0.075 3.925 3 Si 0.892 3.108 4 H -0.271 1.271 5 H -0.284 1.284 6 H -0.280 1.280 7 C -0.498 4.498 8 H 0.064 0.936 9 C 0.034 3.966 10 C 0.158 3.842 11 N -0.650 5.650 12 C 0.495 3.505 13 O -0.549 6.549 14 C 0.508 3.492 15 O -0.521 6.521 16 N -0.710 5.710 17 C 0.121 3.879 18 C -0.125 4.125 19 C 0.094 3.906 20 H 0.062 0.938 21 C -0.150 4.150 22 C -0.123 4.123 23 C -0.158 4.158 24 C 0.060 3.940 25 O -0.375 6.375 26 C -0.193 4.193 27 C -0.211 4.211 28 H 0.263 0.737 29 H 0.034 0.966 30 H 0.115 0.885 31 H 0.413 0.587 32 H 0.411 0.589 33 H 0.079 0.921 34 H 0.067 0.933 35 H 0.086 0.914 36 H 0.081 0.919 37 H 0.073 0.927 38 H 0.074 0.926 39 H 0.067 0.933 40 H 0.063 0.937 41 H 0.072 0.928 42 H 0.071 0.929 43 H 0.050 0.950 44 H 0.094 0.906 45 H 0.067 0.933 46 H 0.081 0.919 47 H 0.077 0.923 48 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.445 2.118 21.615 22.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.507 5.507 2 C -0.130 4.130 3 Si 0.719 3.281 4 H -0.195 1.195 5 H -0.210 1.210 6 H -0.206 1.206 7 C -0.535 4.535 8 H 0.082 0.918 9 C 0.033 3.967 10 C 0.036 3.964 11 N -0.298 5.298 12 C 0.274 3.726 13 O -0.430 6.430 14 C 0.289 3.711 15 O -0.396 6.396 16 N -0.364 5.364 17 C -0.003 4.003 18 C -0.163 4.163 19 C 0.036 3.964 20 H 0.080 0.920 21 C -0.188 4.188 22 C -0.160 4.160 23 C -0.195 4.195 24 C -0.016 4.016 25 O -0.294 6.294 26 C -0.232 4.232 27 C -0.248 4.248 28 H 0.074 0.926 29 H 0.052 0.948 30 H 0.132 0.868 31 H 0.249 0.751 32 H 0.246 0.754 33 H 0.097 0.903 34 H 0.086 0.914 35 H 0.104 0.896 36 H 0.100 0.900 37 H 0.092 0.908 38 H 0.093 0.907 39 H 0.086 0.914 40 H 0.082 0.918 41 H 0.090 0.910 42 H 0.090 0.910 43 H 0.068 0.932 44 H 0.112 0.888 45 H 0.086 0.914 46 H 0.099 0.901 47 H 0.095 0.905 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -4.555 2.301 21.475 22.073 hybrid contribution 0.441 0.826 0.223 0.963 sum -4.114 3.127 21.697 22.304 Atomic orbital electron populations 1.69830 1.05953 1.26968 1.47969 1.24976 0.94819 0.99225 0.93933 0.86528 0.80361 0.83435 0.77790 1.19510 1.20989 1.20584 1.20537 0.94164 0.88780 1.50009 0.91768 1.19188 0.94134 0.89295 0.94043 1.21212 0.98636 0.95677 0.80907 1.45702 1.15188 1.57512 1.11434 1.19790 0.85838 0.82286 0.84688 1.90673 1.20998 1.48730 1.82574 1.20584 0.85457 0.80353 0.84719 1.90742 1.19204 1.48956 1.80682 1.45727 1.15705 1.58472 1.16503 1.21362 0.96756 0.98121 0.84034 1.21837 0.98866 1.00860 0.94691 1.22002 0.96680 0.83248 0.94470 0.92007 1.22208 0.99331 1.01253 0.96025 1.21612 1.01536 0.95463 0.97423 1.22225 1.00314 0.97464 0.99530 1.22562 0.95332 0.96386 0.87355 1.87991 1.86308 1.21894 1.33234 1.22924 0.99462 1.06437 0.94357 1.22977 0.96999 1.01898 1.02956 0.92632 0.94764 0.86773 0.75056 0.75367 0.90310 0.91425 0.89595 0.89999 0.90805 0.90710 0.91433 0.91806 0.90983 0.91004 0.93180 0.88795 0.91426 0.90078 0.90457 0.91274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.46 10.75 55.43 0.60 -22.86 16 2 C 0.07 1.96 5.13 -17.82 -0.09 1.87 16 3 Si 0.89 20.85 29.55 -169.99 -5.02 15.82 16 4 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 5 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.50 -12.89 8.27 -34.44 -0.28 -13.18 16 8 H 0.06 1.67 7.84 -52.48 -0.41 1.26 16 9 C 0.03 0.81 2.00 -155.65 -0.31 0.50 16 10 C 0.16 3.73 4.75 -4.04 -0.02 3.71 16 11 N -0.65 -14.62 5.27 -60.72 -0.32 -14.94 16 12 C 0.49 10.49 7.88 -11.58 -0.09 10.40 16 13 O -0.55 -12.23 16.48 5.49 0.09 -12.14 16 14 C 0.51 9.62 7.89 -11.59 -0.09 9.53 16 15 O -0.52 -11.00 16.49 5.49 0.09 -10.91 16 16 N -0.71 -10.41 5.55 -60.72 -0.34 -10.74 16 17 C 0.12 1.48 5.57 -4.04 -0.02 1.46 16 18 C -0.12 -1.11 5.04 -26.73 -0.13 -1.24 16 19 C 0.09 0.80 2.64 -26.69 -0.07 0.73 16 20 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 21 C -0.15 -1.02 5.41 -26.59 -0.14 -1.16 16 22 C -0.12 -0.74 6.04 -26.47 -0.16 -0.90 16 23 C -0.16 -1.00 6.14 -26.52 -0.16 -1.16 16 24 C 0.06 0.47 6.84 37.20 0.25 0.73 16 25 O -0.38 -3.92 9.94 -35.23 -0.35 -4.27 16 26 C -0.19 -4.22 9.96 -26.69 -0.27 -4.49 16 27 C -0.21 -4.43 9.92 -26.69 -0.26 -4.69 16 28 H 0.26 6.90 8.32 -40.82 -0.34 6.56 16 29 H 0.03 0.78 8.06 -51.93 -0.42 0.36 16 30 H 0.11 3.01 6.04 -51.93 -0.31 2.70 16 31 H 0.41 9.46 7.41 -40.82 -0.30 9.15 16 32 H 0.41 5.39 7.95 -40.82 -0.32 5.07 16 33 H 0.08 1.11 7.83 -51.93 -0.41 0.71 16 34 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 42 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 46 H 0.08 1.78 8.14 -51.93 -0.42 1.35 16 47 H 0.08 1.58 8.14 -51.93 -0.42 1.16 16 48 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 LS Contribution 392.55 15.07 5.92 5.92 Total: -1.00 -29.76 392.55 -9.27 -39.03 By element: Atomic # 1 Polarization: 21.08 SS G_CDS: -8.08 Total: 13.00 kcal Atomic # 6 Polarization: 3.95 SS G_CDS: -1.86 Total: 2.09 kcal Atomic # 7 Polarization: -48.49 SS G_CDS: -0.06 Total: -48.55 kcal Atomic # 8 Polarization: -27.14 SS G_CDS: -0.17 Total: -27.31 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -29.76 -9.27 -39.03 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323777207.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.316 kcal (2) G-P(sol) polarization free energy of solvation -29.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds