Wall clock time and date at job start Tue Mar 31 2020 14:37:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 110.43424 * 2 1 4 4 N 1.46499 * 109.47384 * 297.10557 * 3 2 1 5 5 C 1.34774 * 120.00179 * 180.02562 * 4 3 2 6 6 O 1.21350 * 120.00188 * 359.97438 * 5 4 3 7 7 C 1.49453 * 120.00212 * 180.02562 * 5 4 3 8 8 O 1.21350 * 119.99600 * 359.97438 * 7 5 4 9 9 N 1.34774 * 120.00212 * 180.02562 * 7 5 4 10 10 C 1.46503 * 119.99910 * 179.97438 * 9 7 5 11 11 C 1.53005 * 109.46870 * 179.97438 * 10 9 7 12 12 C 1.50698 * 109.46880 * 179.97438 * 11 10 9 13 13 H 1.07997 * 120.00266 * 0.02562 * 12 11 10 14 14 C 1.37878 * 119.99729 * 180.02562 * 12 11 10 15 15 N 1.31515 * 120.00098 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 119.99854 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.47181 * 89.99736 * 16 14 12 18 18 H 1.48506 * 109.47145 * 209.99853 * 16 14 12 19 19 H 1.48499 * 109.47111 * 329.99699 * 16 14 12 20 20 C 1.54814 * 110.59816 * 237.38215 * 2 1 3 21 21 C 1.54990 * 102.09057 * 262.14586 * 20 2 1 22 22 O 1.44381 * 103.49243 * 322.97437 * 21 20 2 23 23 C 1.43744 * 106.97284 * 40.06295 * 22 21 20 24 24 H 1.09007 * 109.87927 * 92.91047 * 23 22 21 25 25 C 1.53000 * 109.87982 * 214.05976 * 23 22 21 26 26 C 1.52999 * 117.49429 * 8.92839 * 25 23 22 27 27 C 1.52998 * 117.49774 * 300.27267 * 25 23 22 28 28 H 1.08990 * 109.47477 * 59.29679 * 1 2 3 29 29 H 1.08995 * 109.46871 * 179.30130 * 1 2 3 30 30 H 1.09006 * 109.46697 * 299.29514 * 1 2 3 31 31 H 1.09002 * 109.47008 * 177.10177 * 3 2 1 32 32 H 1.08997 * 109.47023 * 57.10472 * 3 2 1 33 33 H 0.97003 * 119.99862 * 359.97438 * 4 3 2 34 34 H 0.97003 * 119.99958 * 359.97438 * 9 7 5 35 35 H 1.08992 * 109.46579 * 60.00245 * 10 9 7 36 36 H 1.08997 * 109.47299 * 299.99974 * 10 9 7 37 37 H 1.08997 * 109.47330 * 300.00189 * 11 10 9 38 38 H 1.09002 * 109.46668 * 60.00518 * 11 10 9 39 39 H 0.97000 * 120.00065 * 179.97438 * 15 14 12 40 40 H 1.09003 * 110.90873 * 20.34618 * 20 2 1 41 41 H 1.09004 * 110.90864 * 143.94420 * 20 2 1 42 42 H 1.09006 * 110.61735 * 204.47269 * 21 20 2 43 43 H 1.08995 * 110.75363 * 81.54449 * 21 20 2 44 44 H 1.09001 * 115.55000 * 154.59384 * 25 23 22 45 45 H 1.08996 * 117.50323 * 359.97438 * 26 25 23 46 46 H 1.09010 * 117.49638 * 145.02110 * 26 25 23 47 47 H 1.09000 * 117.49412 * 214.97530 * 27 25 23 48 48 H 1.08997 * 117.50377 * 359.96701 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0642 1.4337 0.0000 4 7 1.6450 2.1111 -1.2295 5 6 2.0029 3.3918 -1.4489 6 8 2.6721 3.9840 -0.6279 7 6 1.5748 4.0830 -2.7029 8 8 0.9053 3.4909 -3.5238 9 7 1.9332 5.3635 -2.9226 10 6 1.5139 6.0409 -4.1522 11 6 2.0487 7.4744 -4.1524 12 6 1.6180 8.1710 -5.4174 13 1 1.0221 7.6441 -6.1480 14 6 1.9847 9.4809 -5.6422 15 7 2.7099 10.1227 -4.7524 16 14 1.4502 10.3446 -7.2099 17 1 0.1413 11.0097 -6.9871 18 1 2.4649 11.3619 -7.5852 19 1 1.3196 9.3488 -8.3038 20 6 2.0747 -0.7811 -1.2206 21 6 2.3828 -2.1702 -0.6059 22 8 2.8781 -1.8528 0.7126 23 6 2.0695 -0.7766 1.2167 24 1 1.2393 -1.1777 1.7982 25 6 2.9201 0.1488 2.0891 26 6 4.4325 -0.0827 2.0988 27 6 3.5920 -0.4619 3.3206 28 1 -0.3634 0.5247 -0.8835 29 1 -0.3633 -1.0276 -0.0125 30 1 -0.3633 0.5029 0.8963 31 1 3.1529 1.4158 0.0520 32 1 1.6681 1.9690 0.8629 33 1 1.1105 1.6376 -1.8860 34 1 2.4687 5.8367 -2.2666 35 1 0.4254 6.0595 -4.2035 36 1 1.9093 5.5051 -5.0151 37 1 1.6530 8.0100 -3.2895 38 1 3.1373 7.4560 -4.1008 39 1 2.9682 11.0442 -4.9107 40 1 1.3179 -0.8603 -2.0011 41 1 2.9821 -0.3165 -1.6064 42 1 3.1455 -2.6871 -1.1884 43 1 1.4772 -2.7732 -0.5409 44 1 2.5679 1.1774 2.1660 45 1 4.8214 -0.8944 1.4840 46 1 5.0753 0.7937 2.1825 47 1 3.6821 0.1652 4.2076 48 1 3.4277 -1.5227 3.5097 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001323777895.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:37:16 Heat of formation + Delta-G solvation = -122.966269 kcal Electronic energy + Delta-G solvation = -27567.565042 eV Core-core repulsion = 23622.119663 eV Total energy + Delta-G solvation = -3945.445379 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.97165 -41.22752 -39.56843 -37.39696 -37.09544 -36.53481 -34.87583 -33.85641 -31.69782 -30.71167 -28.56050 -27.75313 -26.81922 -24.61514 -24.24645 -23.17884 -22.79139 -21.68117 -21.42777 -20.48204 -19.34383 -18.58699 -17.85946 -17.28078 -17.21892 -16.88312 -16.67694 -16.52396 -16.32442 -16.08365 -15.99780 -15.29013 -15.03275 -14.88795 -14.78024 -14.35775 -14.30987 -14.13478 -13.58872 -13.26376 -13.06650 -12.95063 -12.86204 -12.82020 -12.53036 -12.47181 -12.32754 -12.28565 -12.13135 -11.70555 -11.68951 -11.66806 -11.44279 -11.16747 -10.97168 -10.73744 -10.61924 -10.50755 -10.33702 -10.19621 -8.23780 -6.35030 0.31549 1.29945 1.43537 1.43655 1.55242 2.11501 2.39474 2.65006 2.82009 2.91385 3.11208 3.32788 3.40636 3.51687 3.69233 3.91412 4.04362 4.08593 4.15509 4.24717 4.33803 4.38353 4.44927 4.48102 4.62242 4.63614 4.73496 4.80861 4.83129 4.86295 4.88754 4.92233 5.00392 5.05829 5.07391 5.09298 5.16246 5.24698 5.29761 5.34615 5.41959 5.54456 5.75036 5.91224 5.95978 6.12504 6.34594 6.69386 6.79419 6.91919 7.34573 8.88258 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.026985 B = 0.002049 C = 0.001963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.376775 B =13662.326929 C =14259.981623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.093 4.093 3 C 0.134 3.866 4 N -0.683 5.683 5 C 0.513 3.487 6 O -0.542 6.542 7 C 0.500 3.500 8 O -0.548 6.548 9 N -0.689 5.689 10 C 0.138 3.862 11 C 0.018 3.982 12 C -0.544 4.544 13 H 0.065 0.935 14 C 0.004 3.996 15 N -0.928 5.928 16 Si 0.968 3.032 17 H -0.272 1.272 18 H -0.283 1.283 19 H -0.263 1.263 20 C -0.150 4.150 21 C 0.047 3.953 22 O -0.387 6.387 23 C 0.124 3.876 24 H 0.089 0.911 25 C -0.176 4.176 26 C -0.173 4.173 27 C -0.168 4.168 28 H 0.062 0.938 29 H 0.077 0.923 30 H 0.067 0.933 31 H 0.072 0.928 32 H 0.079 0.921 33 H 0.418 0.582 34 H 0.414 0.586 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.007 0.993 38 H 0.007 0.993 39 H 0.265 0.735 40 H 0.099 0.901 41 H 0.070 0.930 42 H 0.100 0.900 43 H 0.077 0.923 44 H 0.121 0.879 45 H 0.095 0.905 46 H 0.090 0.910 47 H 0.101 0.899 48 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.666 -26.904 13.683 30.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.093 4.093 3 C 0.011 3.989 4 N -0.337 5.337 5 C 0.294 3.706 6 O -0.419 6.419 7 C 0.281 3.719 8 O -0.427 6.427 9 N -0.340 5.340 10 C 0.015 3.985 11 C -0.019 4.019 12 C -0.583 4.583 13 H 0.084 0.916 14 C -0.195 4.195 15 N -0.568 5.568 16 Si 0.792 3.208 17 H -0.198 1.198 18 H -0.208 1.208 19 H -0.187 1.187 20 C -0.188 4.188 21 C -0.029 4.029 22 O -0.306 6.306 23 C 0.066 3.934 24 H 0.107 0.893 25 C -0.194 4.194 26 C -0.210 4.210 27 C -0.205 4.205 28 H 0.081 0.919 29 H 0.096 0.904 30 H 0.086 0.914 31 H 0.090 0.910 32 H 0.097 0.903 33 H 0.256 0.744 34 H 0.250 0.750 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.026 0.974 38 H 0.025 0.975 39 H 0.074 0.926 40 H 0.118 0.882 41 H 0.089 0.911 42 H 0.118 0.882 43 H 0.095 0.905 44 H 0.138 0.862 45 H 0.114 0.886 46 H 0.109 0.891 47 H 0.119 0.881 48 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -2.410 -26.850 13.833 30.300 hybrid contribution -0.050 1.051 -0.777 1.308 sum -2.460 -25.799 13.056 29.019 Atomic orbital electron populations 1.21934 0.91400 1.03513 1.03071 1.22104 0.97761 0.93295 0.96168 1.21806 1.00002 0.91643 0.85401 1.45753 1.53479 1.11044 1.23428 1.19953 0.80813 0.83487 0.86385 1.90763 1.38558 1.65995 1.46580 1.20339 0.81175 0.83015 0.87417 1.90712 1.39159 1.65700 1.47095 1.46078 1.52655 1.12006 1.23257 1.21478 0.99211 0.93327 0.84444 1.19179 0.95838 0.90017 0.96897 1.21451 1.33913 0.97805 1.05088 0.91644 1.25931 0.94880 0.98314 1.00363 1.70078 1.38011 1.11840 1.36872 0.85399 0.78035 0.78183 0.79146 1.19760 1.20803 1.18724 1.23321 1.02292 0.95780 0.97398 1.23646 1.00471 0.96091 0.82705 1.88867 1.57046 1.52472 1.32247 1.22209 0.92276 0.86173 0.92732 0.89348 1.22739 0.95449 1.00196 1.01020 1.22861 0.92804 1.03395 1.01971 1.22975 1.03685 1.01656 0.92134 0.91855 0.90374 0.91406 0.91003 0.90317 0.74376 0.74969 0.91936 0.92002 0.97433 0.97473 0.92576 0.88229 0.91102 0.88219 0.90509 0.86153 0.88645 0.89150 0.88052 0.88687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.33 8.12 71.98 0.58 -0.75 16 2 C -0.09 -1.10 0.68 -51.19 -0.03 -1.14 16 3 C 0.13 2.26 3.14 86.38 0.27 2.53 16 4 N -0.68 -14.03 5.06 -464.41 -2.35 -16.38 16 5 C 0.51 14.58 7.89 87.27 0.69 15.27 16 6 O -0.54 -17.74 16.48 -3.25 -0.05 -17.80 16 7 C 0.50 16.59 7.89 87.27 0.69 17.28 16 8 O -0.55 -19.64 16.48 -3.25 -0.05 -19.69 16 9 N -0.69 -24.88 5.55 -464.41 -2.58 -27.46 16 10 C 0.14 5.74 5.61 86.38 0.48 6.22 16 11 C 0.02 0.92 5.09 29.85 0.15 1.07 16 12 C -0.54 -29.91 9.11 25.60 0.23 -29.68 16 13 H 0.07 3.45 7.74 -2.91 -0.02 3.42 16 14 C 0.00 0.21 5.46 84.65 0.46 0.67 16 15 N -0.93 -54.82 13.29 21.45 0.28 -54.54 16 16 Si 0.97 43.21 29.54 68.60 2.03 45.24 16 17 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 18 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 19 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 20 C -0.15 -1.69 5.60 31.89 0.18 -1.51 16 21 C 0.05 0.50 7.72 72.66 0.56 1.06 16 22 O -0.39 -5.97 9.58 -148.98 -1.43 -7.40 16 23 C 0.12 1.61 3.46 30.97 0.11 1.72 16 24 H 0.09 0.99 7.69 -2.38 -0.02 0.97 16 25 C -0.18 -2.55 4.23 -10.79 -0.05 -2.59 16 26 C -0.17 -2.81 9.84 30.62 0.30 -2.50 16 27 C -0.17 -2.32 10.20 30.62 0.31 -2.01 16 28 H 0.06 0.64 7.11 -2.39 -0.02 0.63 16 29 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.07 0.62 8.14 -2.38 -0.02 0.60 16 31 H 0.07 1.41 7.28 -2.39 -0.02 1.39 16 32 H 0.08 1.35 6.82 -2.39 -0.02 1.33 16 33 H 0.42 7.54 6.63 -92.71 -0.61 6.92 16 34 H 0.41 14.50 7.94 -92.71 -0.74 13.76 16 35 H 0.06 2.60 8.14 -2.39 -0.02 2.58 16 36 H 0.06 2.59 8.14 -2.39 -0.02 2.57 16 37 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 38 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 39 H 0.27 14.74 8.31 -92.71 -0.77 13.97 16 40 H 0.10 0.86 7.87 -2.39 -0.02 0.84 16 41 H 0.07 1.00 7.87 -2.39 -0.02 0.98 16 42 H 0.10 0.93 8.14 -2.38 -0.02 0.91 16 43 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 44 H 0.12 1.74 5.92 -2.39 -0.01 1.72 16 45 H 0.10 1.71 7.08 -2.39 -0.02 1.70 16 46 H 0.09 1.47 8.14 -2.38 -0.02 1.45 16 47 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 48 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 Total: -1.00 -66.03 389.14 0.42 -65.60 By element: Atomic # 1 Polarization: 27.17 SS G_CDS: -0.38 Total: 26.79 kcal Atomic # 6 Polarization: 0.69 SS G_CDS: 4.94 Total: 5.63 kcal Atomic # 7 Polarization: -93.74 SS G_CDS: -4.64 Total: -98.38 kcal Atomic # 8 Polarization: -43.35 SS G_CDS: -1.53 Total: -44.89 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.24 kcal Total: -66.03 0.42 -65.60 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323777895.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.361 kcal (2) G-P(sol) polarization free energy of solvation -66.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds