Wall clock time and date at job start Tue Mar 31 2020 14:36:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53009 * 109.53974 * 2 1 4 4 N 1.46500 * 109.46979 * 60.00058 * 3 2 1 5 5 C 1.34774 * 119.99630 * 180.02562 * 4 3 2 6 6 O 1.21349 * 120.00173 * 359.97438 * 5 4 3 7 7 C 1.49453 * 119.99846 * 180.02562 * 5 4 3 8 8 O 1.21353 * 120.00125 * 5.08748 * 7 5 4 9 9 N 1.34774 * 120.00102 * 185.09319 * 7 5 4 10 10 C 1.46494 * 120.00151 * 184.55658 * 9 7 5 11 11 C 1.53003 * 109.47491 * 184.70074 * 10 9 7 12 12 C 1.50708 * 115.54705 * 294.79992 * 11 10 9 13 13 H 1.07999 * 119.99435 * 121.52691 * 12 11 10 14 14 C 1.37869 * 119.99831 * 301.24568 * 12 11 10 15 15 N 1.31521 * 120.00014 * 173.16061 * 14 12 11 16 16 Si 1.86803 * 120.00258 * 353.16421 * 14 12 11 17 17 H 1.48495 * 109.47128 * 94.23742 * 16 14 12 18 18 H 1.48507 * 109.47100 * 214.23862 * 16 14 12 19 19 H 1.48500 * 109.46890 * 334.23636 * 16 14 12 20 20 C 1.53001 * 117.49727 * 80.46616 * 11 10 9 21 21 C 1.52994 * 117.50267 * 149.12521 * 11 10 9 22 22 C 1.53173 * 109.54493 * 120.17479 * 2 1 3 23 23 C 1.53104 * 109.15578 * 63.07086 * 22 2 1 24 24 O 1.42893 * 109.48865 * 57.46998 * 23 22 2 25 25 C 1.42901 * 114.09997 * 298.88952 * 24 23 22 26 26 C 1.53090 * 109.41619 * 61.15840 * 25 24 23 27 27 H 1.09000 * 109.47996 * 60.00023 * 1 2 3 28 28 H 1.09007 * 109.47079 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47514 * 299.99584 * 1 2 3 30 30 H 1.09003 * 109.46714 * 300.00260 * 3 2 1 31 31 H 1.08994 * 109.47239 * 180.02562 * 3 2 1 32 32 H 0.96995 * 120.00213 * 0.02562 * 4 3 2 33 33 H 0.97001 * 120.00152 * 4.55797 * 9 7 5 34 34 H 1.08998 * 109.47592 * 64.70314 * 10 9 7 35 35 H 1.08995 * 109.47447 * 304.69904 * 10 9 7 36 36 H 0.97002 * 120.00052 * 180.02562 * 15 14 12 37 37 H 1.09004 * 117.49881 * 215.00573 * 20 11 10 38 38 H 1.08997 * 117.49907 * 0.02562 * 20 11 10 39 39 H 1.09000 * 117.50159 * 359.97438 * 21 11 10 40 40 H 1.08998 * 117.50086 * 144.97404 * 21 11 10 41 41 H 1.09005 * 109.52157 * 182.88705 * 22 2 1 42 42 H 1.09002 * 109.52663 * 303.06904 * 22 2 1 43 43 H 1.09003 * 109.40162 * 297.48586 * 23 22 2 44 44 H 1.09005 * 109.48806 * 177.50936 * 23 22 2 45 45 H 1.08998 * 109.48099 * 301.17810 * 25 24 23 46 46 H 1.09003 * 109.48876 * 181.14957 * 25 24 23 47 47 H 1.08993 * 109.52377 * 182.48635 * 26 25 24 48 48 H 1.09003 * 109.57560 * 62.32722 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0417 1.4420 0.0000 4 7 1.5542 2.1331 1.1962 5 6 1.8809 3.4232 1.4092 6 8 2.5793 4.0121 0.6104 7 6 1.3841 4.1282 2.6297 8 8 0.7646 3.5155 3.4744 9 7 1.6240 5.4444 2.7923 10 6 1.2252 6.1139 4.0328 11 6 1.5025 7.6140 3.9147 12 6 2.9546 7.9990 3.7947 13 1 3.2962 8.5558 2.9346 14 6 3.8456 7.6455 4.7856 15 7 5.1324 7.8614 4.6204 16 14 3.2253 6.8599 6.3628 17 1 3.2964 5.3817 6.2406 18 1 4.0687 7.3036 7.5018 19 1 1.8179 7.2699 6.5997 20 6 0.4812 8.4635 3.1557 21 6 0.5802 8.5653 4.6798 22 6 2.0424 -0.7255 1.2479 23 6 1.5932 -2.1884 1.1985 24 8 2.0772 -2.7954 -0.0011 25 6 1.5914 -2.1877 -1.1998 26 6 2.0423 -0.7255 -1.2479 27 1 -0.3635 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.6789 1.9562 -0.8900 31 1 3.1317 1.4407 -0.0005 32 1 0.9963 1.6623 1.8349 33 1 2.0608 5.9484 2.0880 34 1 1.7950 5.7037 4.8665 35 1 0.1611 5.9537 4.2062 36 1 5.7594 7.6124 5.3174 37 1 0.8595 9.3010 2.5695 38 1 -0.3884 7.9539 2.7408 39 1 -0.2244 8.1226 5.2669 40 1 1.0238 9.4694 5.0967 41 1 3.1312 -0.6808 1.2739 42 1 1.6360 -0.2481 2.1395 43 1 0.5043 -2.2335 1.2150 44 1 1.9923 -2.7207 2.0620 45 1 0.5024 -2.2329 -1.2146 46 1 1.9891 -2.7195 -2.0641 47 1 1.6359 -0.2482 -2.1395 48 1 3.1311 -0.6798 -1.2745 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324385632.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:36:43 Heat of formation + Delta-G solvation = -100.000025 kcal Electronic energy + Delta-G solvation = -28134.101052 eV Core-core repulsion = 24189.651564 eV Total energy + Delta-G solvation = -3944.449488 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.77987 -39.97189 -38.34535 -37.04546 -36.47345 -33.98273 -33.12938 -32.22851 -31.51859 -28.48717 -27.89018 -27.10142 -25.48899 -24.14640 -23.75030 -22.29710 -21.59185 -20.07728 -19.51220 -19.03741 -18.21592 -16.77290 -16.54712 -16.37830 -16.23356 -15.88891 -15.43645 -15.36694 -15.11974 -14.87447 -14.77315 -14.25912 -14.01314 -13.79111 -13.54224 -13.20107 -12.97552 -12.80760 -12.57609 -12.37373 -12.31924 -12.18162 -11.79673 -11.67765 -11.46333 -11.39994 -11.09078 -10.86459 -10.74171 -10.62128 -10.60547 -10.32275 -9.80934 -9.66982 -9.33288 -9.26088 -9.24014 -8.91876 -8.53195 -8.47984 -6.20391 -4.22398 1.71086 2.59002 3.23116 3.34222 3.38380 3.51129 3.52657 3.91098 4.16465 4.19511 4.31406 4.33796 4.62178 4.71023 4.76496 4.81667 4.89191 4.96353 5.16418 5.17376 5.18449 5.22896 5.33326 5.35056 5.43522 5.52701 5.57852 5.57894 5.62069 5.72104 5.81404 5.86621 5.98670 6.06091 6.08626 6.19790 6.33604 6.42620 6.62896 6.76585 6.83357 6.87238 7.05608 7.16227 7.62031 7.74663 8.05184 8.36811 8.41129 8.82657 9.42153 10.90690 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.021080 B = 0.002676 C = 0.002608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.985924 B =10462.446822 C =10732.022431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.075 4.075 3 C 0.130 3.870 4 N -0.706 5.706 5 C 0.508 3.492 6 O -0.512 6.512 7 C 0.497 3.503 8 O -0.543 6.543 9 N -0.664 5.664 10 C 0.149 3.851 11 C -0.018 4.018 12 C -0.492 4.492 13 H 0.080 0.920 14 C 0.083 3.917 15 N -0.888 5.888 16 Si 0.867 3.133 17 H -0.278 1.278 18 H -0.290 1.290 19 H -0.251 1.251 20 C -0.180 4.180 21 C -0.186 4.186 22 C -0.150 4.150 23 C 0.060 3.940 24 O -0.383 6.383 25 C 0.061 3.939 26 C -0.143 4.143 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.061 0.939 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.410 0.590 33 H 0.420 0.580 34 H 0.062 0.938 35 H 0.058 0.942 36 H 0.266 0.734 37 H 0.087 0.913 38 H 0.073 0.927 39 H 0.071 0.929 40 H 0.090 0.910 41 H 0.077 0.923 42 H 0.077 0.923 43 H 0.053 0.947 44 H 0.094 0.906 45 H 0.053 0.947 46 H 0.094 0.906 47 H 0.078 0.922 48 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.012 -18.474 -9.849 23.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.075 4.075 3 C 0.006 3.994 4 N -0.361 5.361 5 C 0.288 3.712 6 O -0.386 6.386 7 C 0.277 3.723 8 O -0.422 6.422 9 N -0.314 5.314 10 C 0.026 3.974 11 C -0.020 4.020 12 C -0.529 4.529 13 H 0.098 0.902 14 C -0.121 4.121 15 N -0.524 5.524 16 Si 0.695 3.305 17 H -0.205 1.205 18 H -0.217 1.217 19 H -0.175 1.175 20 C -0.217 4.217 21 C -0.224 4.224 22 C -0.188 4.188 23 C -0.017 4.017 24 O -0.301 6.301 25 C -0.016 4.016 26 C -0.181 4.181 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.247 0.753 33 H 0.258 0.742 34 H 0.080 0.920 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.106 0.894 38 H 0.092 0.908 39 H 0.089 0.911 40 H 0.109 0.891 41 H 0.096 0.904 42 H 0.096 0.904 43 H 0.071 0.929 44 H 0.112 0.888 45 H 0.071 0.929 46 H 0.112 0.888 47 H 0.097 0.903 48 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -9.593 -18.604 -9.739 23.087 hybrid contribution -0.322 -0.071 0.964 1.019 sum -9.914 -18.675 -8.775 22.892 Atomic orbital electron populations 1.22034 0.93754 1.02267 1.02783 1.20844 0.96416 0.94038 0.96199 1.21472 0.99661 0.90613 0.87644 1.45757 1.53242 1.11528 1.25577 1.20352 0.81290 0.82704 0.86810 1.90786 1.35995 1.65999 1.45865 1.19992 0.81613 0.83749 0.86971 1.90702 1.40771 1.66290 1.44440 1.45740 1.57394 1.07655 1.20614 1.21297 0.98042 0.93171 0.84882 1.19577 0.93759 0.87198 1.01440 1.20268 0.87842 1.36860 1.07888 0.90166 1.24934 0.94463 0.94579 0.98141 1.69897 1.01528 1.46921 1.34016 0.87047 0.80350 0.79531 0.83562 1.20471 1.21725 1.17475 1.22799 1.00884 1.03575 0.94422 1.23072 1.02717 1.03294 0.93351 1.22306 1.02523 0.96199 0.97742 1.22615 0.98475 0.92857 0.87707 1.87944 1.71832 1.56588 1.13775 1.22594 0.98457 0.92697 0.87871 1.22183 1.02382 0.96199 0.97346 0.91873 0.91950 0.92006 0.90770 0.90785 0.75283 0.74240 0.92032 0.92366 0.92375 0.89449 0.90814 0.91072 0.89122 0.90426 0.90419 0.92850 0.88751 0.92880 0.88802 0.90307 0.90426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 7.76 37.16 0.29 -0.74 16 2 C -0.07 -0.56 0.53 -154.33 -0.08 -0.64 16 3 C 0.13 1.30 4.58 -4.04 -0.02 1.28 16 4 N -0.71 -8.68 4.98 -60.73 -0.30 -8.98 16 5 C 0.51 8.33 7.89 -11.59 -0.09 8.24 16 6 O -0.51 -9.62 16.50 5.50 0.09 -9.53 16 7 C 0.50 9.26 7.88 -11.58 -0.09 9.17 16 8 O -0.54 -10.69 16.47 5.49 0.09 -10.59 16 9 N -0.66 -13.25 5.46 -60.73 -0.33 -13.59 16 10 C 0.15 3.15 5.08 -4.04 -0.02 3.13 16 11 C -0.02 -0.41 0.85 -155.66 -0.13 -0.54 16 12 C -0.49 -13.00 9.19 -34.44 -0.32 -13.31 16 13 H 0.08 2.31 8.06 -52.49 -0.42 1.89 16 14 C 0.08 2.29 5.46 -17.82 -0.10 2.20 16 15 N -0.89 -26.29 13.96 55.43 0.77 -25.52 16 16 Si 0.87 21.11 24.69 -169.99 -4.20 16.91 16 17 H -0.28 -6.86 6.96 56.52 0.39 -6.47 16 18 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 19 H -0.25 -5.71 6.11 56.52 0.35 -5.36 16 20 C -0.18 -3.42 9.96 -26.70 -0.27 -3.68 16 21 C -0.19 -3.71 8.69 -26.70 -0.23 -3.94 16 22 C -0.15 -1.19 4.70 -26.59 -0.13 -1.32 16 23 C 0.06 0.45 6.57 37.21 0.24 0.69 16 24 O -0.38 -3.44 10.77 -35.23 -0.38 -3.82 16 25 C 0.06 0.40 6.57 37.20 0.24 0.65 16 26 C -0.14 -0.95 4.92 -26.59 -0.13 -1.08 16 27 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.06 0.37 5.02 -51.93 -0.26 0.11 16 29 H 0.06 0.45 6.87 -51.93 -0.36 0.09 16 30 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 31 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.41 4.58 5.69 -40.82 -0.23 4.35 16 33 H 0.42 8.47 7.83 -40.82 -0.32 8.15 16 34 H 0.06 1.43 4.27 -51.93 -0.22 1.20 16 35 H 0.06 1.14 8.06 -51.93 -0.42 0.72 16 36 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 37 H 0.09 1.66 8.14 -51.93 -0.42 1.23 16 38 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 39 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 40 H 0.09 1.84 8.14 -51.93 -0.42 1.42 16 41 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.08 0.62 6.98 -51.93 -0.36 0.26 16 43 H 0.05 0.35 6.61 -51.93 -0.34 0.01 16 44 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.05 0.31 6.60 -51.93 -0.34 -0.04 16 46 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 47 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 48 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 375.62 15.07 5.66 5.66 Total: -1.00 -31.27 375.62 -6.98 -38.24 By element: Atomic # 1 Polarization: 18.66 SS G_CDS: -7.55 Total: 11.11 kcal Atomic # 6 Polarization: 0.93 SS G_CDS: -0.83 Total: 0.11 kcal Atomic # 7 Polarization: -48.23 SS G_CDS: 0.14 Total: -48.09 kcal Atomic # 8 Polarization: -23.74 SS G_CDS: -0.20 Total: -23.94 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -4.20 Total: 16.91 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -31.27 -6.98 -38.24 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324385632.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.756 kcal (2) G-P(sol) polarization free energy of solvation -31.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds