Wall clock time and date at job start Tue Mar 31 2020 14:36:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53009 * 109.53974 * 2 1 4 4 N 1.46500 * 109.46979 * 60.00058 * 3 2 1 5 5 C 1.34774 * 119.99630 * 180.02562 * 4 3 2 6 6 O 1.21349 * 120.00173 * 359.97438 * 5 4 3 7 7 C 1.49453 * 119.99846 * 180.02562 * 5 4 3 8 8 O 1.21353 * 120.00125 * 5.08748 * 7 5 4 9 9 N 1.34774 * 120.00102 * 185.09319 * 7 5 4 10 10 C 1.46494 * 120.00151 * 184.55658 * 9 7 5 11 11 C 1.53003 * 109.47491 * 184.70074 * 10 9 7 12 12 C 1.50708 * 115.54705 * 294.79992 * 11 10 9 13 13 H 1.07999 * 119.99435 * 121.52691 * 12 11 10 14 14 C 1.37869 * 119.99831 * 301.24568 * 12 11 10 15 15 N 1.31521 * 120.00014 * 173.16061 * 14 12 11 16 16 Si 1.86803 * 120.00258 * 353.16421 * 14 12 11 17 17 H 1.48495 * 109.47128 * 94.23742 * 16 14 12 18 18 H 1.48507 * 109.47100 * 214.23862 * 16 14 12 19 19 H 1.48500 * 109.46890 * 334.23636 * 16 14 12 20 20 C 1.53001 * 117.49727 * 80.46616 * 11 10 9 21 21 C 1.52994 * 117.50267 * 149.12521 * 11 10 9 22 22 C 1.53173 * 109.54493 * 120.17479 * 2 1 3 23 23 C 1.53104 * 109.15578 * 63.07086 * 22 2 1 24 24 O 1.42893 * 109.48865 * 57.46998 * 23 22 2 25 25 C 1.42901 * 114.09997 * 298.88952 * 24 23 22 26 26 C 1.53090 * 109.41619 * 61.15840 * 25 24 23 27 27 H 1.09000 * 109.47996 * 60.00023 * 1 2 3 28 28 H 1.09007 * 109.47079 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47514 * 299.99584 * 1 2 3 30 30 H 1.09003 * 109.46714 * 300.00260 * 3 2 1 31 31 H 1.08994 * 109.47239 * 180.02562 * 3 2 1 32 32 H 0.96995 * 120.00213 * 0.02562 * 4 3 2 33 33 H 0.97001 * 120.00152 * 4.55797 * 9 7 5 34 34 H 1.08998 * 109.47592 * 64.70314 * 10 9 7 35 35 H 1.08995 * 109.47447 * 304.69904 * 10 9 7 36 36 H 0.97002 * 120.00052 * 180.02562 * 15 14 12 37 37 H 1.09004 * 117.49881 * 215.00573 * 20 11 10 38 38 H 1.08997 * 117.49907 * 0.02562 * 20 11 10 39 39 H 1.09000 * 117.50159 * 359.97438 * 21 11 10 40 40 H 1.08998 * 117.50086 * 144.97404 * 21 11 10 41 41 H 1.09005 * 109.52157 * 182.88705 * 22 2 1 42 42 H 1.09002 * 109.52663 * 303.06904 * 22 2 1 43 43 H 1.09003 * 109.40162 * 297.48586 * 23 22 2 44 44 H 1.09005 * 109.48806 * 177.50936 * 23 22 2 45 45 H 1.08998 * 109.48099 * 301.17810 * 25 24 23 46 46 H 1.09003 * 109.48876 * 181.14957 * 25 24 23 47 47 H 1.08993 * 109.52377 * 182.48635 * 26 25 24 48 48 H 1.09003 * 109.57560 * 62.32722 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0417 1.4420 0.0000 4 7 1.5542 2.1331 1.1962 5 6 1.8809 3.4232 1.4092 6 8 2.5793 4.0121 0.6104 7 6 1.3841 4.1282 2.6297 8 8 0.7646 3.5155 3.4744 9 7 1.6240 5.4444 2.7923 10 6 1.2252 6.1139 4.0328 11 6 1.5025 7.6140 3.9147 12 6 2.9546 7.9990 3.7947 13 1 3.2962 8.5558 2.9346 14 6 3.8456 7.6455 4.7856 15 7 5.1324 7.8614 4.6204 16 14 3.2253 6.8599 6.3628 17 1 3.2964 5.3817 6.2406 18 1 4.0687 7.3036 7.5018 19 1 1.8179 7.2699 6.5997 20 6 0.4812 8.4635 3.1557 21 6 0.5802 8.5653 4.6798 22 6 2.0424 -0.7255 1.2479 23 6 1.5932 -2.1884 1.1985 24 8 2.0772 -2.7954 -0.0011 25 6 1.5914 -2.1877 -1.1998 26 6 2.0423 -0.7255 -1.2479 27 1 -0.3635 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.6789 1.9562 -0.8900 31 1 3.1317 1.4407 -0.0005 32 1 0.9963 1.6623 1.8349 33 1 2.0608 5.9484 2.0880 34 1 1.7950 5.7037 4.8665 35 1 0.1611 5.9537 4.2062 36 1 5.7594 7.6124 5.3174 37 1 0.8595 9.3010 2.5695 38 1 -0.3884 7.9539 2.7408 39 1 -0.2244 8.1226 5.2669 40 1 1.0238 9.4694 5.0967 41 1 3.1312 -0.6808 1.2739 42 1 1.6360 -0.2481 2.1395 43 1 0.5043 -2.2335 1.2150 44 1 1.9923 -2.7207 2.0620 45 1 0.5024 -2.2329 -1.2146 46 1 1.9891 -2.7195 -2.0641 47 1 1.6359 -0.2482 -2.1395 48 1 3.1311 -0.6798 -1.2745 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324385632.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:36:42 Heat of formation + Delta-G solvation = -123.290612 kcal Electronic energy + Delta-G solvation = -28135.111007 eV Core-core repulsion = 24189.651564 eV Total energy + Delta-G solvation = -3945.459443 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.87667 -40.93335 -39.72474 -38.67471 -37.33791 -35.31679 -34.33339 -34.29091 -32.08254 -29.49201 -28.86959 -28.28409 -27.32578 -25.05339 -24.56115 -23.34788 -23.04367 -21.45882 -21.15098 -19.95284 -19.45175 -18.37518 -17.94496 -17.34602 -17.15139 -16.94076 -16.81695 -16.61639 -16.17327 -16.00701 -15.69409 -15.41412 -15.21784 -14.95319 -14.89811 -14.63573 -14.36780 -14.12492 -13.90544 -13.51394 -13.21868 -13.03276 -12.90913 -12.81152 -12.65648 -12.39060 -12.24625 -12.17699 -12.10514 -12.09665 -11.51521 -11.45311 -11.18436 -11.09465 -10.81889 -10.76199 -10.41164 -10.36914 -10.34103 -10.10448 -8.33269 -6.37095 0.30906 1.27792 1.31717 1.36013 1.46437 2.10120 2.31606 2.59914 2.96768 3.00085 3.32657 3.46542 3.49204 3.57494 3.70521 3.94241 4.06516 4.15181 4.23062 4.27420 4.34845 4.41983 4.46315 4.52311 4.58250 4.65283 4.69023 4.69593 4.76864 4.81797 4.92094 4.92389 4.97855 5.01555 5.04025 5.11769 5.16299 5.19118 5.22981 5.27973 5.42869 5.52533 5.65442 5.92141 6.26868 6.29210 6.36284 6.68145 6.71822 6.91377 7.30081 8.81675 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.021080 B = 0.002676 C = 0.002608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.985924 B =10462.446822 C =10732.022431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.067 4.067 3 C 0.127 3.873 4 N -0.683 5.683 5 C 0.510 3.490 6 O -0.542 6.542 7 C 0.497 3.503 8 O -0.552 6.552 9 N -0.672 5.672 10 C 0.154 3.846 11 C -0.048 4.048 12 C -0.482 4.482 13 H 0.040 0.960 14 C 0.029 3.971 15 N -0.940 5.940 16 Si 0.922 3.078 17 H -0.285 1.285 18 H -0.295 1.295 19 H -0.220 1.220 20 C -0.158 4.158 21 C -0.176 4.176 22 C -0.150 4.150 23 C 0.060 3.940 24 O -0.404 6.404 25 C 0.057 3.943 26 C -0.140 4.140 27 H 0.068 0.932 28 H 0.074 0.926 29 H 0.056 0.944 30 H 0.079 0.921 31 H 0.064 0.936 32 H 0.418 0.582 33 H 0.417 0.583 34 H 0.041 0.959 35 H 0.082 0.918 36 H 0.265 0.735 37 H 0.082 0.918 38 H 0.103 0.897 39 H 0.100 0.900 40 H 0.083 0.917 41 H 0.063 0.937 42 H 0.076 0.924 43 H 0.067 0.933 44 H 0.098 0.902 45 H 0.066 0.934 46 H 0.105 0.895 47 H 0.093 0.907 48 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.958 -19.941 -9.952 25.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.067 4.067 3 C 0.004 3.996 4 N -0.338 5.338 5 C 0.290 3.710 6 O -0.419 6.419 7 C 0.278 3.722 8 O -0.431 6.431 9 N -0.322 5.322 10 C 0.031 3.969 11 C -0.049 4.049 12 C -0.519 4.519 13 H 0.058 0.942 14 C -0.170 4.170 15 N -0.579 5.579 16 Si 0.748 3.252 17 H -0.212 1.212 18 H -0.223 1.223 19 H -0.143 1.143 20 C -0.195 4.195 21 C -0.214 4.214 22 C -0.188 4.188 23 C -0.016 4.016 24 O -0.323 6.323 25 C -0.019 4.019 26 C -0.178 4.178 27 H 0.087 0.913 28 H 0.093 0.907 29 H 0.075 0.925 30 H 0.098 0.902 31 H 0.082 0.918 32 H 0.256 0.744 33 H 0.253 0.747 34 H 0.059 0.941 35 H 0.100 0.900 36 H 0.074 0.926 37 H 0.101 0.899 38 H 0.121 0.879 39 H 0.118 0.882 40 H 0.101 0.899 41 H 0.082 0.918 42 H 0.095 0.905 43 H 0.085 0.915 44 H 0.116 0.884 45 H 0.084 0.916 46 H 0.123 0.877 47 H 0.112 0.888 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -12.591 -20.104 -9.845 25.683 hybrid contribution 0.589 0.372 0.883 1.125 sum -12.002 -19.732 -8.962 24.773 Atomic orbital electron populations 1.22032 0.92644 1.03130 1.02855 1.20798 0.97170 0.92118 0.96628 1.21670 0.99209 0.92049 0.86626 1.45733 1.51876 1.10068 1.26099 1.20018 0.81308 0.83728 0.85901 1.90781 1.37630 1.66895 1.46583 1.20337 0.81044 0.83329 0.87518 1.90687 1.41144 1.66328 1.44981 1.45780 1.57817 1.08295 1.20291 1.21171 0.98965 0.92082 0.84647 1.19439 0.91765 0.88410 1.05292 1.20418 0.90572 1.35029 1.05908 0.94176 1.25675 0.94420 0.95577 1.01323 1.70038 1.02996 1.49681 1.35228 0.86171 0.81310 0.78038 0.79671 1.21211 1.22251 1.14262 1.22855 1.00192 1.02299 0.94136 1.23119 1.02043 1.01891 0.94322 1.22299 1.01683 0.96938 0.97898 1.22669 0.99226 0.92172 0.87573 1.87920 1.72455 1.57249 1.14705 1.22748 0.99288 0.92383 0.87472 1.22176 1.01900 0.96433 0.97327 0.91262 0.90716 0.92480 0.90243 0.91752 0.74361 0.74654 0.94130 0.90013 0.92602 0.89900 0.87878 0.88215 0.89876 0.91806 0.90533 0.91526 0.88420 0.91579 0.87706 0.88818 0.91336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 7.76 71.98 0.56 -1.08 16 2 C -0.07 -0.89 0.53 -52.06 -0.03 -0.92 16 3 C 0.13 2.41 4.58 86.38 0.40 2.80 16 4 N -0.68 -16.02 4.98 -464.40 -2.31 -18.33 16 5 C 0.51 16.43 7.89 87.27 0.69 17.12 16 6 O -0.54 -20.39 16.50 -3.24 -0.05 -20.44 16 7 C 0.50 18.03 7.88 87.27 0.69 18.71 16 8 O -0.55 -20.79 16.47 -3.26 -0.05 -20.84 16 9 N -0.67 -26.32 5.46 -464.42 -2.54 -28.86 16 10 C 0.15 6.23 5.08 86.38 0.44 6.67 16 11 C -0.05 -2.03 0.85 -52.93 -0.04 -2.08 16 12 C -0.48 -25.91 9.19 25.60 0.24 -25.68 16 13 H 0.04 2.41 8.06 -2.91 -0.02 2.39 16 14 C 0.03 1.62 5.46 84.65 0.46 2.09 16 15 N -0.94 -57.82 13.96 21.45 0.30 -57.53 16 16 Si 0.92 43.67 24.69 68.60 1.69 45.37 16 17 H -0.29 -13.72 6.96 99.48 0.69 -13.03 16 18 H -0.30 -14.07 7.11 99.48 0.71 -13.36 16 19 H -0.22 -9.22 6.11 99.48 0.61 -8.61 16 20 C -0.16 -5.57 9.96 30.62 0.30 -5.26 16 21 C -0.18 -6.43 8.69 30.62 0.27 -6.16 16 22 C -0.15 -2.21 4.70 30.69 0.14 -2.07 16 23 C 0.06 0.80 6.57 72.02 0.47 1.27 16 24 O -0.40 -6.62 10.77 -148.98 -1.60 -8.22 16 25 C 0.06 0.63 6.57 72.01 0.47 1.11 16 26 C -0.14 -1.60 4.92 30.68 0.15 -1.45 16 27 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 28 H 0.07 0.66 5.02 -2.38 -0.01 0.65 16 29 H 0.06 0.69 6.87 -2.39 -0.02 0.67 16 30 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.42 8.65 5.69 -92.71 -0.53 8.12 16 33 H 0.42 16.90 7.83 -92.71 -0.73 16.17 16 34 H 0.04 1.81 4.27 -2.39 -0.01 1.80 16 35 H 0.08 2.91 8.06 -2.39 -0.02 2.89 16 36 H 0.26 15.45 8.31 -92.71 -0.77 14.68 16 37 H 0.08 3.00 8.14 -2.39 -0.02 2.98 16 38 H 0.10 3.07 8.14 -2.39 -0.02 3.05 16 39 H 0.10 3.12 8.14 -2.39 -0.02 3.11 16 40 H 0.08 3.18 8.14 -2.39 -0.02 3.16 16 41 H 0.06 1.11 8.14 -2.38 -0.02 1.09 16 42 H 0.08 1.12 6.98 -2.39 -0.02 1.11 16 43 H 0.07 0.71 6.61 -2.39 -0.02 0.69 16 44 H 0.10 1.20 8.14 -2.38 -0.02 1.18 16 45 H 0.07 0.56 6.60 -2.39 -0.02 0.55 16 46 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 47 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 48 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 Total: -1.00 -68.66 375.62 0.26 -68.40 By element: Atomic # 1 Polarization: 35.76 SS G_CDS: -0.38 Total: 35.38 kcal Atomic # 6 Polarization: -0.13 SS G_CDS: 5.21 Total: 5.07 kcal Atomic # 7 Polarization: -100.17 SS G_CDS: -4.55 Total: -104.72 kcal Atomic # 8 Polarization: -47.79 SS G_CDS: -1.71 Total: -49.50 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 1.69 Total: 45.37 kcal Total: -68.66 0.26 -68.40 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324385632.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.892 kcal (2) G-P(sol) polarization free energy of solvation -68.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds