Wall clock time and date at job start Tue Mar 31 2020 14:03:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 112.90443 * 2 1 4 4 C 1.53782 * 113.61664 * 131.25219 * 2 1 3 5 5 C 1.53778 * 87.08206 * 89.11539 * 4 2 1 6 6 C 1.53001 * 113.61214 * 139.98080 * 5 4 2 7 7 N 1.46504 * 109.46889 * 176.53266 * 6 5 4 8 8 C 1.34777 * 119.99827 * 180.02562 * 7 6 5 9 9 O 1.21345 * 120.00010 * 359.97438 * 8 7 6 10 10 C 1.49454 * 119.99788 * 179.97438 * 8 7 6 11 11 O 1.21345 * 120.00202 * 359.97438 * 10 8 7 12 12 N 1.34777 * 119.99788 * 179.97438 * 10 8 7 13 13 C 1.47027 * 125.64867 * 359.95106 * 12 10 8 14 14 C 1.54367 * 107.28564 * 181.13053 * 13 12 10 15 15 C 1.55156 * 102.92264 * 22.14605 * 14 13 12 16 16 O 1.42894 * 111.00661 * 82.63741 * 15 14 13 17 17 C 1.50705 * 111.00010 * 206.45343 * 15 14 13 18 18 H 1.07993 * 120.00222 * 356.17881 * 17 15 14 19 19 C 1.37881 * 119.99392 * 175.90919 * 17 15 14 20 20 N 1.31509 * 120.00570 * 354.23595 * 19 17 15 21 21 Si 1.86801 * 119.99492 * 174.24147 * 19 17 15 22 22 H 1.48500 * 109.47445 * 94.98741 * 21 19 17 23 23 H 1.48506 * 109.47043 * 214.98367 * 21 19 17 24 24 H 1.48496 * 109.47404 * 334.97778 * 21 19 17 25 25 C 1.47424 * 125.64700 * 179.97438 * 12 10 8 26 26 C 1.53785 * 87.17000 * 25.39111 * 5 4 2 27 27 H 1.08994 * 109.47610 * 288.74838 * 1 2 3 28 28 H 1.09003 * 109.47153 * 48.74722 * 1 2 3 29 29 H 1.08996 * 109.47011 * 168.74474 * 1 2 3 30 30 H 1.09001 * 109.46621 * 191.24707 * 3 2 1 31 31 H 1.08994 * 109.47385 * 311.25086 * 3 2 1 32 32 H 1.09004 * 109.46997 * 71.25479 * 3 2 1 33 33 H 1.09003 * 113.60938 * 334.56462 * 4 2 1 34 34 H 1.08996 * 113.61671 * 203.67068 * 4 2 1 35 35 H 1.08999 * 113.61802 * 270.80466 * 5 4 2 36 36 H 1.08998 * 109.46757 * 56.53123 * 6 5 4 37 37 H 1.09002 * 109.47174 * 296.53117 * 6 5 4 38 38 H 0.96999 * 120.00200 * 359.97438 * 7 6 5 39 39 H 1.08996 * 109.88083 * 300.51793 * 13 12 10 40 40 H 1.09004 * 109.88118 * 61.68271 * 13 12 10 41 41 H 1.08998 * 110.70797 * 263.79195 * 14 13 12 42 42 H 1.09008 * 110.75397 * 140.50586 * 14 13 12 43 43 H 0.96708 * 113.99643 * 183.17930 * 16 15 14 44 44 H 0.96998 * 120.00806 * 180.02562 * 20 19 17 45 45 H 1.09000 * 110.36750 * 36.99474 * 25 12 10 46 46 H 1.08997 * 110.36842 * 274.66920 * 25 12 10 47 47 H 1.08998 * 113.61402 * 89.16105 * 26 5 4 48 48 H 1.09005 * 113.61352 * 220.05680 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1255 1.4094 0.0000 4 6 2.1461 -0.9291 1.0593 5 6 2.0930 -2.0425 0.0000 6 6 3.3265 -2.9477 0.0000 7 7 3.1451 -4.0202 -0.9815 8 6 4.1107 -4.9441 -1.1561 9 8 5.1304 -4.8875 -0.5007 10 6 3.9254 -6.0385 -2.1569 11 8 2.9055 -6.0955 -2.8119 12 7 4.8912 -6.9622 -2.3319 13 6 6.1709 -7.0114 -1.6096 14 6 6.9619 -8.2176 -2.1595 15 6 6.3225 -8.4448 -3.5548 16 8 6.8884 -7.5638 -4.5272 17 6 6.4630 -9.8821 -3.9856 18 1 7.0130 -10.5789 -3.3706 19 6 5.8844 -10.3087 -5.1622 20 7 5.1163 -9.4931 -5.8509 21 14 6.1916 -12.0454 -5.7780 22 1 5.0891 -12.9325 -5.3278 23 1 6.2491 -12.0415 -7.2619 24 1 7.4808 -12.5427 -5.2341 25 6 4.8396 -8.0903 -3.2796 26 6 2.1448 -0.9306 -1.0611 27 1 -0.3634 0.3303 0.9731 28 1 -0.3634 0.6776 -0.7726 29 1 -0.3633 -1.0079 -0.2006 30 1 3.1953 1.3517 -0.2004 31 1 1.6428 2.0078 -0.7726 32 1 1.9626 1.8726 0.9732 33 1 1.4945 -1.1086 1.9146 34 1 3.1590 -0.6498 1.3490 35 1 1.1574 -2.6019 0.0009 36 1 3.4591 -3.3810 0.9913 37 1 4.2075 -2.3614 -0.2612 38 1 2.3299 -4.0657 -1.5051 39 1 6.7300 -6.0920 -1.7831 40 1 5.9896 -7.1418 -0.5427 41 1 6.8222 -9.0921 -1.5241 42 1 8.0201 -7.9743 -2.2553 43 1 6.4863 -7.6352 -5.4038 44 1 4.7090 -9.7933 -6.6784 45 1 4.3443 -7.7881 -4.2024 46 1 4.3232 -8.9391 -2.8313 47 1 3.1575 -0.6519 -1.3523 48 1 1.4923 -1.1115 -1.9154 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326129605.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:03:59 Heat of formation + Delta-G solvation = -107.687014 kcal Electronic energy + Delta-G solvation = -27915.609051 eV Core-core repulsion = 23970.826230 eV Total energy + Delta-G solvation = -3944.782820 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.53917 -39.91353 -38.34679 -37.14891 -35.06398 -34.10299 -32.25208 -31.36126 -30.20838 -27.95073 -27.79792 -27.18898 -26.07346 -25.52549 -23.51565 -21.76744 -21.17922 -19.75745 -19.34455 -18.57431 -17.35176 -17.11198 -16.54773 -16.02373 -15.62465 -15.25595 -15.15829 -14.74511 -14.67558 -14.41237 -14.29441 -13.86267 -13.64735 -13.14151 -13.07593 -13.04390 -12.86943 -12.61206 -12.27039 -12.25599 -12.18098 -11.74147 -11.69588 -11.53650 -11.25088 -11.05466 -11.04512 -10.90039 -10.76411 -10.55879 -10.49815 -10.39895 -10.36865 -10.21511 -9.35941 -9.16797 -9.09730 -8.73017 -8.41036 -7.87794 -6.30444 -4.39927 1.84109 2.69227 3.19235 3.27604 3.31425 3.64491 3.89865 4.12819 4.24224 4.26366 4.28655 4.43533 4.74899 4.81498 4.96609 4.99517 5.05039 5.25778 5.27855 5.40782 5.45286 5.47630 5.50170 5.56043 5.57710 5.61334 5.70328 5.79776 5.81543 5.84785 5.85592 6.07105 6.07644 6.16758 6.26949 6.38485 6.53387 6.74313 6.82487 6.86777 7.19724 7.27031 7.33585 7.71689 7.90850 8.00165 8.08746 8.48208 8.64250 9.27855 9.33588 10.76119 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.030632 B = 0.002291 C = 0.002220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.842490 B =12218.625024 C =12608.317396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.091 4.091 3 C -0.136 4.136 4 C -0.120 4.120 5 C -0.125 4.125 6 C 0.130 3.870 7 N -0.706 5.706 8 C 0.509 3.491 9 O -0.519 6.519 10 C 0.507 3.493 11 O -0.539 6.539 12 N -0.575 5.575 13 C 0.112 3.888 14 C -0.121 4.121 15 C 0.248 3.752 16 O -0.581 6.581 17 C -0.537 4.537 18 H 0.068 0.932 19 C 0.070 3.930 20 N -0.892 5.892 21 Si 0.904 3.096 22 H -0.279 1.279 23 H -0.284 1.284 24 H -0.271 1.271 25 C 0.093 3.907 26 C -0.128 4.128 27 H 0.057 0.943 28 H 0.057 0.943 29 H 0.058 0.942 30 H 0.056 0.944 31 H 0.054 0.946 32 H 0.055 0.945 33 H 0.070 0.930 34 H 0.085 0.915 35 H 0.098 0.902 36 H 0.070 0.930 37 H 0.071 0.929 38 H 0.411 0.589 39 H 0.070 0.930 40 H 0.064 0.936 41 H 0.078 0.922 42 H 0.076 0.924 43 H 0.380 0.620 44 H 0.270 0.730 45 H 0.091 0.909 46 H 0.067 0.933 47 H 0.084 0.916 48 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.177 16.890 11.737 21.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.091 4.091 3 C -0.193 4.193 4 C -0.158 4.158 5 C -0.144 4.144 6 C 0.006 3.994 7 N -0.360 5.360 8 C 0.290 3.710 9 O -0.394 6.394 10 C 0.289 3.711 11 O -0.418 6.418 12 N -0.306 5.306 13 C -0.011 4.011 14 C -0.159 4.159 15 C 0.207 3.793 16 O -0.389 6.389 17 C -0.576 4.576 18 H 0.087 0.913 19 C -0.133 4.133 20 N -0.531 5.531 21 Si 0.731 3.269 22 H -0.205 1.205 23 H -0.209 1.209 24 H -0.196 1.196 25 C -0.028 4.028 26 C -0.166 4.166 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.089 0.911 34 H 0.104 0.896 35 H 0.116 0.884 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.247 0.753 39 H 0.088 0.912 40 H 0.082 0.918 41 H 0.096 0.904 42 H 0.095 0.905 43 H 0.230 0.770 44 H 0.080 0.920 45 H 0.109 0.891 46 H 0.085 0.915 47 H 0.103 0.897 48 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -6.744 17.132 12.227 22.102 hybrid contribution -0.711 -1.107 -1.083 1.704 sum -7.455 16.025 11.144 20.894 Atomic orbital electron populations 1.21602 0.93135 1.02064 1.01812 1.21809 0.95588 0.94569 0.97109 1.21729 1.00579 0.95378 1.01610 1.23024 1.01555 0.94904 0.96345 1.22784 0.98365 0.94860 0.98348 1.21435 0.97745 0.87793 0.92387 1.45745 1.21221 1.27576 1.41493 1.20429 0.83629 0.83126 0.83815 1.90721 1.27390 1.74500 1.46772 1.19590 0.84037 0.82978 0.84496 1.90718 1.27786 1.75124 1.48199 1.48681 1.16651 1.26446 1.38860 1.22144 0.83900 0.99822 0.95233 1.22721 0.99598 0.96329 0.97290 1.19641 0.85973 0.88698 0.84978 1.86131 1.64677 1.64234 1.23832 1.21472 1.34844 0.94214 1.07030 0.91342 1.25096 0.93472 0.98348 0.96385 1.69749 1.30603 1.36407 1.16328 0.86382 0.78783 0.83601 0.78108 1.20529 1.20923 1.19603 1.23513 1.02368 0.85119 0.91810 1.23232 1.01550 0.95223 0.96552 0.92420 0.92369 0.92292 0.92455 0.92646 0.92628 0.91139 0.89642 0.88411 0.91144 0.91065 0.75264 0.91215 0.91778 0.90363 0.90525 0.77007 0.91982 0.89054 0.91451 0.89715 0.91138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.79 9.07 37.16 0.34 -0.45 16 2 C -0.09 -0.60 1.39 -153.61 -0.21 -0.82 16 3 C -0.14 -0.84 9.20 37.16 0.34 -0.50 16 4 C -0.12 -0.81 6.79 -25.92 -0.18 -0.98 16 5 C -0.12 -0.97 3.40 -89.81 -0.31 -1.28 16 6 C 0.13 1.34 5.50 -4.04 -0.02 1.32 16 7 N -0.71 -9.30 5.55 -60.73 -0.34 -9.64 16 8 C 0.51 8.75 7.86 -11.58 -0.09 8.66 16 9 O -0.52 -9.60 14.12 5.50 0.08 -9.53 16 10 C 0.51 10.35 7.91 -11.58 -0.09 10.25 16 11 O -0.54 -11.92 16.73 5.50 0.09 -11.83 16 12 N -0.57 -12.35 3.33 -170.98 -0.57 -12.92 16 13 C 0.11 2.19 5.49 -3.04 -0.02 2.18 16 14 C -0.12 -2.49 6.13 -24.87 -0.15 -2.65 16 15 C 0.25 6.01 0.88 -89.61 -0.08 5.93 16 16 O -0.58 -14.78 13.17 -35.23 -0.46 -15.24 16 17 C -0.54 -13.85 8.25 -34.44 -0.28 -14.13 16 18 H 0.07 1.73 7.79 -52.49 -0.41 1.32 16 19 C 0.07 1.81 5.27 -17.82 -0.09 1.72 16 20 N -0.89 -23.48 10.70 55.43 0.59 -22.88 16 21 Si 0.90 20.14 29.54 -169.99 -5.02 15.12 16 22 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 23 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 24 H -0.27 -6.02 7.11 56.52 0.40 -5.61 16 25 C 0.09 2.22 5.40 -2.51 -0.01 2.21 16 26 C -0.13 -0.98 6.76 -25.83 -0.17 -1.16 16 27 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.06 0.37 7.34 -51.93 -0.38 -0.01 16 30 H 0.06 0.36 7.95 -51.93 -0.41 -0.05 16 31 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 33 H 0.07 0.44 8.10 -51.93 -0.42 0.02 16 34 H 0.09 0.56 8.06 -51.93 -0.42 0.14 16 35 H 0.10 0.74 7.66 -51.93 -0.40 0.34 16 36 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 37 H 0.07 0.77 7.88 -51.93 -0.41 0.36 16 38 H 0.41 5.04 7.94 -40.82 -0.32 4.72 16 39 H 0.07 1.38 7.58 -51.93 -0.39 0.99 16 40 H 0.06 1.16 7.69 -51.93 -0.40 0.76 16 41 H 0.08 1.50 8.03 -51.93 -0.42 1.08 16 42 H 0.08 1.51 8.14 -51.92 -0.42 1.09 16 43 H 0.38 9.84 7.54 45.56 0.34 10.18 16 44 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 45 H 0.09 2.42 7.31 -51.93 -0.38 2.04 16 46 H 0.07 1.65 8.03 -51.93 -0.42 1.23 16 47 H 0.08 0.69 7.74 -51.93 -0.40 0.28 16 48 H 0.07 0.56 8.10 -51.93 -0.42 0.13 16 LS Contribution 385.67 15.07 5.81 5.81 Total: -1.00 -28.91 385.67 -8.18 -37.09 By element: Atomic # 1 Polarization: 21.05 SS G_CDS: -7.33 Total: 13.72 kcal Atomic # 6 Polarization: 11.33 SS G_CDS: -1.04 Total: 10.30 kcal Atomic # 7 Polarization: -45.13 SS G_CDS: -0.31 Total: -45.44 kcal Atomic # 8 Polarization: -36.30 SS G_CDS: -0.29 Total: -36.60 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.02 Total: 15.12 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -28.91 -8.18 -37.09 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326129605.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.597 kcal (2) G-P(sol) polarization free energy of solvation -28.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds