Wall clock time and date at job start Tue Mar 31 2020 14:03:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 112.90443 * 2 1 4 4 C 1.53782 * 113.61664 * 131.25219 * 2 1 3 5 5 C 1.53778 * 87.08206 * 89.11539 * 4 2 1 6 6 C 1.53001 * 113.61214 * 139.98080 * 5 4 2 7 7 N 1.46504 * 109.46889 * 176.53266 * 6 5 4 8 8 C 1.34777 * 119.99827 * 180.02562 * 7 6 5 9 9 O 1.21345 * 120.00010 * 359.97438 * 8 7 6 10 10 C 1.49454 * 119.99788 * 179.97438 * 8 7 6 11 11 O 1.21345 * 120.00202 * 359.97438 * 10 8 7 12 12 N 1.34777 * 119.99788 * 179.97438 * 10 8 7 13 13 C 1.47027 * 125.64867 * 359.95106 * 12 10 8 14 14 C 1.54367 * 107.28564 * 181.13053 * 13 12 10 15 15 C 1.55156 * 102.92264 * 22.14605 * 14 13 12 16 16 O 1.42894 * 111.00661 * 82.63741 * 15 14 13 17 17 C 1.50705 * 111.00010 * 206.45343 * 15 14 13 18 18 H 1.07993 * 120.00222 * 356.17881 * 17 15 14 19 19 C 1.37881 * 119.99392 * 175.90919 * 17 15 14 20 20 N 1.31509 * 120.00570 * 354.23595 * 19 17 15 21 21 Si 1.86801 * 119.99492 * 174.24147 * 19 17 15 22 22 H 1.48500 * 109.47445 * 94.98741 * 21 19 17 23 23 H 1.48506 * 109.47043 * 214.98367 * 21 19 17 24 24 H 1.48496 * 109.47404 * 334.97778 * 21 19 17 25 25 C 1.47424 * 125.64700 * 179.97438 * 12 10 8 26 26 C 1.53785 * 87.17000 * 25.39111 * 5 4 2 27 27 H 1.08994 * 109.47610 * 288.74838 * 1 2 3 28 28 H 1.09003 * 109.47153 * 48.74722 * 1 2 3 29 29 H 1.08996 * 109.47011 * 168.74474 * 1 2 3 30 30 H 1.09001 * 109.46621 * 191.24707 * 3 2 1 31 31 H 1.08994 * 109.47385 * 311.25086 * 3 2 1 32 32 H 1.09004 * 109.46997 * 71.25479 * 3 2 1 33 33 H 1.09003 * 113.60938 * 334.56462 * 4 2 1 34 34 H 1.08996 * 113.61671 * 203.67068 * 4 2 1 35 35 H 1.08999 * 113.61802 * 270.80466 * 5 4 2 36 36 H 1.08998 * 109.46757 * 56.53123 * 6 5 4 37 37 H 1.09002 * 109.47174 * 296.53117 * 6 5 4 38 38 H 0.96999 * 120.00200 * 359.97438 * 7 6 5 39 39 H 1.08996 * 109.88083 * 300.51793 * 13 12 10 40 40 H 1.09004 * 109.88118 * 61.68271 * 13 12 10 41 41 H 1.08998 * 110.70797 * 263.79195 * 14 13 12 42 42 H 1.09008 * 110.75397 * 140.50586 * 14 13 12 43 43 H 0.96708 * 113.99643 * 183.17930 * 16 15 14 44 44 H 0.96998 * 120.00806 * 180.02562 * 20 19 17 45 45 H 1.09000 * 110.36750 * 36.99474 * 25 12 10 46 46 H 1.08997 * 110.36842 * 274.66920 * 25 12 10 47 47 H 1.08998 * 113.61402 * 89.16105 * 26 5 4 48 48 H 1.09005 * 113.61352 * 220.05680 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1255 1.4094 0.0000 4 6 2.1461 -0.9291 1.0593 5 6 2.0930 -2.0425 0.0000 6 6 3.3265 -2.9477 0.0000 7 7 3.1451 -4.0202 -0.9815 8 6 4.1107 -4.9441 -1.1561 9 8 5.1304 -4.8875 -0.5007 10 6 3.9254 -6.0385 -2.1569 11 8 2.9055 -6.0955 -2.8119 12 7 4.8912 -6.9622 -2.3319 13 6 6.1709 -7.0114 -1.6096 14 6 6.9619 -8.2176 -2.1595 15 6 6.3225 -8.4448 -3.5548 16 8 6.8884 -7.5638 -4.5272 17 6 6.4630 -9.8821 -3.9856 18 1 7.0130 -10.5789 -3.3706 19 6 5.8844 -10.3087 -5.1622 20 7 5.1163 -9.4931 -5.8509 21 14 6.1916 -12.0454 -5.7780 22 1 5.0891 -12.9325 -5.3278 23 1 6.2491 -12.0415 -7.2619 24 1 7.4808 -12.5427 -5.2341 25 6 4.8396 -8.0903 -3.2796 26 6 2.1448 -0.9306 -1.0611 27 1 -0.3634 0.3303 0.9731 28 1 -0.3634 0.6776 -0.7726 29 1 -0.3633 -1.0079 -0.2006 30 1 3.1953 1.3517 -0.2004 31 1 1.6428 2.0078 -0.7726 32 1 1.9626 1.8726 0.9732 33 1 1.4945 -1.1086 1.9146 34 1 3.1590 -0.6498 1.3490 35 1 1.1574 -2.6019 0.0009 36 1 3.4591 -3.3810 0.9913 37 1 4.2075 -2.3614 -0.2612 38 1 2.3299 -4.0657 -1.5051 39 1 6.7300 -6.0920 -1.7831 40 1 5.9896 -7.1418 -0.5427 41 1 6.8222 -9.0921 -1.5241 42 1 8.0201 -7.9743 -2.2553 43 1 6.4863 -7.6352 -5.4038 44 1 4.7090 -9.7933 -6.6784 45 1 4.3443 -7.7881 -4.2024 46 1 4.3232 -8.9391 -2.8313 47 1 3.1575 -0.6519 -1.3523 48 1 1.4923 -1.1115 -1.9154 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326129605.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:03:58 Heat of formation + Delta-G solvation = -127.482440 kcal Electronic energy + Delta-G solvation = -27916.467445 eV Core-core repulsion = 23970.826230 eV Total energy + Delta-G solvation = -3945.641215 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.84339 -40.80662 -39.84791 -38.86585 -36.46650 -35.65575 -34.24363 -32.09074 -31.95568 -29.71959 -28.40100 -28.22126 -27.19135 -26.63680 -25.08439 -23.23522 -22.02898 -21.54804 -20.74311 -19.18122 -19.14892 -18.71445 -17.97553 -17.33614 -17.07763 -16.89608 -16.30524 -16.26280 -15.89297 -15.54889 -15.16214 -14.95479 -14.78397 -14.68703 -14.67700 -14.28139 -13.95694 -13.65991 -13.58764 -13.51525 -13.32247 -12.87993 -12.83485 -12.71732 -12.67282 -12.53075 -12.35013 -12.28948 -12.24038 -12.12249 -11.84153 -11.47373 -11.20445 -11.02403 -10.94592 -10.72973 -10.58662 -10.34479 -10.26779 -9.64087 -8.25649 -6.42434 0.34325 1.28820 1.43015 1.46322 1.56287 2.12252 2.37354 2.52797 2.99651 3.30599 3.56431 3.64817 3.68404 3.76189 3.81710 4.05080 4.15247 4.18539 4.32172 4.37196 4.43312 4.61593 4.66257 4.73286 4.76358 4.80552 4.84131 4.92384 4.96942 4.98120 5.01786 5.05293 5.05837 5.13276 5.16921 5.22555 5.28723 5.32335 5.34454 5.42450 5.55306 5.65793 5.74088 5.98030 6.05980 6.37625 6.61897 6.68004 6.92700 7.25746 7.32606 8.79539 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.030632 B = 0.002291 C = 0.002220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.842490 B =12218.625024 C =12608.317396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.088 4.088 3 C -0.136 4.136 4 C -0.115 4.115 5 C -0.120 4.120 6 C 0.129 3.871 7 N -0.687 5.687 8 C 0.515 3.485 9 O -0.532 6.532 10 C 0.500 3.500 11 O -0.562 6.562 12 N -0.583 5.583 13 C 0.119 3.881 14 C -0.115 4.115 15 C 0.232 3.768 16 O -0.587 6.587 17 C -0.556 4.556 18 H 0.071 0.929 19 C 0.028 3.972 20 N -0.914 5.914 21 Si 0.965 3.035 22 H -0.277 1.277 23 H -0.283 1.283 24 H -0.267 1.267 25 C 0.106 3.894 26 C -0.133 4.133 27 H 0.064 0.936 28 H 0.058 0.942 29 H 0.056 0.944 30 H 0.054 0.946 31 H 0.055 0.945 32 H 0.061 0.939 33 H 0.079 0.921 34 H 0.088 0.912 35 H 0.104 0.896 36 H 0.074 0.926 37 H 0.070 0.930 38 H 0.417 0.583 39 H 0.069 0.931 40 H 0.084 0.916 41 H 0.093 0.907 42 H 0.086 0.914 43 H 0.374 0.626 44 H 0.270 0.730 45 H 0.058 0.942 46 H 0.055 0.945 47 H 0.079 0.921 48 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.281 17.508 13.238 23.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.088 4.088 3 C -0.193 4.193 4 C -0.152 4.152 5 C -0.139 4.139 6 C 0.007 3.993 7 N -0.340 5.340 8 C 0.295 3.705 9 O -0.409 6.409 10 C 0.284 3.716 11 O -0.442 6.442 12 N -0.315 5.315 13 C -0.003 4.003 14 C -0.153 4.153 15 C 0.192 3.808 16 O -0.394 6.394 17 C -0.594 4.594 18 H 0.089 0.911 19 C -0.174 4.174 20 N -0.553 5.553 21 Si 0.791 3.209 22 H -0.202 1.202 23 H -0.209 1.209 24 H -0.191 1.191 25 C -0.016 4.016 26 C -0.170 4.170 27 H 0.083 0.917 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.081 0.919 33 H 0.098 0.902 34 H 0.106 0.894 35 H 0.122 0.878 36 H 0.092 0.908 37 H 0.088 0.912 38 H 0.254 0.746 39 H 0.087 0.913 40 H 0.103 0.897 41 H 0.111 0.889 42 H 0.104 0.896 43 H 0.223 0.777 44 H 0.080 0.920 45 H 0.077 0.923 46 H 0.074 0.926 47 H 0.098 0.902 48 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -6.862 17.787 13.757 23.510 hybrid contribution -0.734 -1.232 -1.554 2.114 sum -7.596 16.555 12.203 21.925 Atomic orbital electron populations 1.21610 0.92656 1.02059 1.02301 1.21803 0.95934 0.94648 0.96390 1.21726 1.00389 0.95116 1.02044 1.23021 1.01983 0.93939 0.96305 1.22779 0.97321 0.94559 0.99191 1.21664 0.99080 0.87055 0.91503 1.45769 1.20189 1.26809 1.41224 1.19791 0.84373 0.83081 0.83235 1.90715 1.28046 1.74902 1.47236 1.20287 0.83301 0.83329 0.84722 1.90695 1.28626 1.75727 1.49196 1.48728 1.17706 1.26281 1.38784 1.22162 0.82827 0.99290 0.95974 1.22736 1.00026 0.97406 0.95120 1.19868 0.86510 0.88128 0.86289 1.86124 1.64847 1.64679 1.23766 1.21757 1.35020 0.95083 1.07500 0.91126 1.25821 0.93186 1.01778 0.96584 1.69860 1.31073 1.37862 1.16480 0.85427 0.78689 0.79435 0.77374 1.20245 1.20872 1.19105 1.23087 1.01924 0.85599 0.90943 1.23261 1.01357 0.95687 0.96728 0.91682 0.92287 0.92446 0.92697 0.92581 0.91949 0.90235 0.89360 0.87789 0.90759 0.91178 0.74626 0.91312 0.89733 0.88891 0.89587 0.77746 0.92027 0.92309 0.92627 0.90232 0.91501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.34 9.07 71.98 0.65 -0.68 16 2 C -0.09 -1.00 1.39 -51.60 -0.07 -1.07 16 3 C -0.14 -1.45 9.20 71.98 0.66 -0.78 16 4 C -0.11 -1.28 6.79 31.12 0.21 -1.07 16 5 C -0.12 -1.64 3.40 -10.27 -0.03 -1.67 16 6 C 0.13 2.44 5.50 86.38 0.47 2.91 16 7 N -0.69 -17.20 5.55 -464.40 -2.58 -19.77 16 8 C 0.52 17.21 7.86 87.27 0.69 17.90 16 9 O -0.53 -18.92 14.12 -3.23 -0.05 -18.97 16 10 C 0.50 20.41 7.91 87.27 0.69 21.10 16 11 O -0.56 -25.16 16.73 -3.23 -0.05 -25.21 16 12 N -0.58 -25.12 3.33 -813.22 -2.70 -27.82 16 13 C 0.12 4.55 5.49 86.74 0.48 5.03 16 14 C -0.12 -4.61 6.13 31.80 0.19 -4.41 16 15 C 0.23 11.33 0.88 -10.14 -0.01 11.33 16 16 O -0.59 -30.30 13.17 -148.98 -1.96 -32.26 16 17 C -0.56 -28.64 8.25 25.60 0.21 -28.43 16 18 H 0.07 3.52 7.79 -2.91 -0.02 3.50 16 19 C 0.03 1.42 5.27 84.66 0.45 1.86 16 20 N -0.91 -48.95 10.70 21.45 0.23 -48.72 16 21 Si 0.97 41.23 29.54 68.60 2.03 43.26 16 22 H -0.28 -11.63 7.11 99.48 0.71 -10.92 16 23 H -0.28 -11.98 7.11 99.48 0.71 -11.28 16 24 H -0.27 -11.10 7.11 99.48 0.71 -10.40 16 25 C 0.11 5.22 5.40 86.86 0.47 5.69 16 26 C -0.13 -1.86 6.76 31.18 0.21 -1.65 16 27 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 28 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.06 0.61 7.34 -2.39 -0.02 0.59 16 30 H 0.05 0.61 7.95 -2.39 -0.02 0.59 16 31 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.06 0.58 8.14 -2.38 -0.02 0.57 16 33 H 0.08 0.78 8.10 -2.39 -0.02 0.76 16 34 H 0.09 0.96 8.06 -2.39 -0.02 0.94 16 35 H 0.10 1.34 7.66 -2.39 -0.02 1.32 16 36 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.07 1.40 7.88 -2.39 -0.02 1.38 16 38 H 0.42 9.73 7.94 -92.71 -0.74 9.00 16 39 H 0.07 2.64 7.58 -2.39 -0.02 2.63 16 40 H 0.08 2.89 7.69 -2.39 -0.02 2.87 16 41 H 0.09 3.42 8.03 -2.39 -0.02 3.40 16 42 H 0.09 3.26 8.14 -2.38 -0.02 3.24 16 43 H 0.37 19.94 7.54 -74.05 -0.56 19.38 16 44 H 0.27 13.86 8.31 -92.71 -0.77 13.09 16 45 H 0.06 3.24 7.31 -2.39 -0.02 3.22 16 46 H 0.06 2.80 8.03 -2.39 -0.02 2.78 16 47 H 0.08 1.20 7.74 -2.39 -0.02 1.18 16 48 H 0.07 0.98 8.10 -2.38 -0.02 0.96 16 Total: -1.00 -61.40 385.67 -0.14 -61.54 By element: Atomic # 1 Polarization: 42.23 SS G_CDS: -0.33 Total: 41.91 kcal Atomic # 6 Polarization: 20.78 SS G_CDS: 5.27 Total: 26.05 kcal Atomic # 7 Polarization: -91.26 SS G_CDS: -5.05 Total: -96.32 kcal Atomic # 8 Polarization: -74.38 SS G_CDS: -2.06 Total: -76.44 kcal Atomic # 14 Polarization: 41.23 SS G_CDS: 2.03 Total: 43.26 kcal Total: -61.40 -0.14 -61.54 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326129605.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.937 kcal (2) G-P(sol) polarization free energy of solvation -61.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds