Wall clock time and date at job start Tue Mar 31 2020 15:09:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.46935 * 2 1 4 4 C 1.52995 * 109.51370 * 59.89835 * 3 2 1 5 5 C 1.53301 * 109.50864 * 180.02562 * 3 2 1 6 6 N 1.47154 * 108.37923 * 172.22803 * 5 3 2 7 7 C 1.34776 * 120.98195 * 129.48983 * 6 5 3 8 8 O 1.21349 * 119.99968 * 351.98051 * 7 6 5 9 9 C 1.49443 * 120.00044 * 171.98419 * 7 6 5 10 10 O 1.21346 * 120.00195 * 353.67561 * 9 7 6 11 11 N 1.34785 * 120.00032 * 173.66902 * 9 7 6 12 12 C 1.46497 * 119.99991 * 185.04495 * 11 9 7 13 13 C 1.52994 * 109.47133 * 175.05324 * 12 11 9 14 14 C 1.50706 * 115.55228 * 279.60228 * 13 12 11 15 15 H 1.07998 * 120.00002 * 95.22448 * 14 13 12 16 16 C 1.37873 * 119.99754 * 275.22674 * 14 13 12 17 17 N 1.31514 * 120.00247 * 5.30171 * 16 14 13 18 18 Si 1.86799 * 119.99823 * 185.30386 * 16 14 13 19 19 H 1.48502 * 109.47409 * 59.99991 * 18 16 14 20 20 H 1.48504 * 109.47060 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.47259 * 299.99968 * 18 16 14 22 22 C 1.53004 * 117.50100 * 133.89275 * 13 12 11 23 23 C 1.53002 * 117.49936 * 65.27011 * 13 12 11 24 24 C 1.47153 * 118.03566 * 309.45924 * 6 5 3 25 25 C 1.53286 * 108.38423 * 50.53796 * 24 6 5 26 26 O 1.42957 * 109.22523 * 307.70017 * 25 24 6 27 27 H 1.09004 * 109.46959 * 60.00294 * 1 2 3 28 28 H 1.09001 * 109.46983 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47265 * 299.99996 * 1 2 3 30 30 H 1.08997 * 109.47194 * 120.00034 * 2 1 3 31 31 H 1.08998 * 109.47204 * 239.99490 * 2 1 3 32 32 H 1.09003 * 109.47361 * 59.99885 * 4 3 2 33 33 H 1.08996 * 109.47498 * 179.97438 * 4 3 2 34 34 H 1.09000 * 109.46986 * 300.00031 * 4 3 2 35 35 H 1.08997 * 109.68086 * 291.94443 * 5 3 2 36 36 H 1.08994 * 109.68177 * 52.46529 * 5 3 2 37 37 H 0.96996 * 119.99704 * 5.04809 * 11 9 7 38 38 H 1.08997 * 109.47632 * 295.05727 * 12 11 9 39 39 H 1.09004 * 109.47066 * 55.05754 * 12 11 9 40 40 H 0.97002 * 120.00063 * 185.00515 * 17 16 14 41 41 H 1.09001 * 117.49255 * 0.02562 * 22 13 12 42 42 H 1.08996 * 117.50138 * 145.01996 * 22 13 12 43 43 H 1.09002 * 117.50223 * 214.98288 * 23 13 12 44 44 H 1.08996 * 117.49523 * 0.02562 * 23 13 12 45 45 H 1.08994 * 109.67998 * 170.26490 * 24 6 5 46 46 H 1.09006 * 109.67953 * 290.81222 * 24 6 5 47 47 H 1.09004 * 109.51304 * 67.62474 * 25 24 6 48 48 H 1.09000 * 109.51333 * 187.76989 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.5284 2.1654 1.2476 5 6 3.5730 1.4436 -0.0006 6 7 4.0359 2.8276 -0.1895 7 6 4.9520 3.3714 0.6360 8 8 5.2998 2.7747 1.6338 9 6 5.5393 4.7094 0.3227 10 8 5.2796 5.2547 -0.7298 11 7 6.3574 5.3107 1.2093 12 6 6.8447 6.6682 0.9526 13 6 7.6467 7.1588 2.1596 14 6 6.8302 7.6738 3.3168 15 1 6.5850 7.0178 4.1390 16 6 6.3960 8.9824 3.3259 17 7 6.6040 9.7515 2.2795 18 14 5.5125 9.6629 4.8244 19 1 6.4043 9.5727 6.0083 20 1 5.1522 11.0834 4.5839 21 1 4.2791 8.8741 5.0725 22 6 8.9913 7.8360 1.8864 23 6 8.9512 6.4285 2.4851 24 6 3.4696 3.5999 -1.3067 25 6 1.9418 3.4937 -1.2425 26 8 1.5684 2.1157 -1.1697 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 1.8933 -0.5138 0.8899 31 1 1.8933 -0.5139 -0.8899 32 1 1.8902 1.6525 2.1388 33 1 1.8924 3.1928 1.2472 34 1 0.4384 2.1658 1.2460 35 1 3.9407 1.0601 0.9511 36 1 3.9401 0.8187 -0.8147 37 1 6.6234 4.8445 2.0172 38 1 7.4833 6.6641 0.0693 39 1 5.9971 7.3328 0.7851 40 1 6.3643 10.6908 2.3127 41 1 9.3041 7.9323 0.8467 42 1 9.2854 8.6543 2.5436 43 1 9.2190 6.3209 3.5362 44 1 9.2381 5.5989 1.8391 45 1 3.7690 4.6444 -1.2199 46 1 3.8266 3.1927 -2.2527 47 1 1.5773 4.0169 -0.3584 48 1 1.5078 3.9419 -2.1363 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326145476.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:09:39 Heat of formation + Delta-G solvation = -95.139211 kcal Electronic energy + Delta-G solvation = -28780.595585 eV Core-core repulsion = 24836.356878 eV Total energy + Delta-G solvation = -3944.238707 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.21044 -40.70193 -39.41791 -38.57245 -36.40730 -35.43146 -34.90487 -33.97429 -31.24683 -30.06075 -29.05669 -28.09481 -27.27564 -25.46714 -24.64764 -23.20270 -22.83495 -21.39253 -20.94514 -20.43630 -19.03091 -18.22551 -17.94796 -17.52199 -17.26433 -16.86766 -16.62861 -16.37508 -16.11979 -15.87040 -15.59536 -15.42954 -15.02888 -14.89415 -14.67720 -14.38171 -14.12718 -13.80165 -13.50189 -13.42174 -13.17828 -13.02805 -13.00065 -12.86265 -12.80321 -12.47935 -12.41249 -12.30526 -12.05473 -11.97577 -11.70478 -11.60992 -11.49736 -11.08429 -10.90016 -10.51097 -10.44018 -10.14446 -9.98423 -9.70062 -8.13615 -6.26185 0.27014 1.18937 1.41875 1.43206 1.49793 2.05847 2.35670 2.41702 2.70704 3.15347 3.22717 3.51017 3.54739 3.76844 3.81935 3.93204 4.14056 4.18304 4.28464 4.38045 4.46659 4.50760 4.54136 4.58339 4.59122 4.63615 4.65611 4.69012 4.82199 4.85158 4.94658 4.99469 5.00660 5.05453 5.12220 5.16369 5.25348 5.29924 5.42431 5.50961 5.56638 5.63306 5.74836 5.84424 6.15481 6.23705 6.34110 6.63725 6.79969 6.92911 7.43653 8.94191 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.017142 B = 0.003089 C = 0.002910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1633.026672 B = 9063.162266 C = 9619.218615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.104 4.104 3 C 0.104 3.896 4 C -0.176 4.176 5 C 0.083 3.917 6 N -0.580 5.580 7 C 0.513 3.487 8 O -0.539 6.539 9 C 0.497 3.503 10 O -0.539 6.539 11 N -0.670 5.670 12 C 0.177 3.823 13 C 0.000 4.000 14 C -0.512 4.512 15 H 0.055 0.945 16 C 0.030 3.970 17 N -0.902 5.902 18 Si 0.945 3.055 19 H -0.271 1.271 20 H -0.286 1.286 21 H -0.276 1.276 22 C -0.150 4.150 23 C -0.180 4.180 24 C 0.042 3.958 25 C 0.047 3.953 26 O -0.373 6.373 27 H 0.052 0.948 28 H 0.067 0.933 29 H 0.055 0.945 30 H 0.091 0.909 31 H 0.079 0.921 32 H 0.072 0.928 33 H 0.039 0.961 34 H 0.078 0.922 35 H 0.099 0.901 36 H 0.094 0.906 37 H 0.414 0.586 38 H 0.051 0.949 39 H 0.047 0.953 40 H 0.261 0.739 41 H 0.077 0.923 42 H 0.065 0.935 43 H 0.084 0.916 44 H 0.091 0.909 45 H 0.129 0.871 46 H 0.087 0.913 47 H 0.052 0.948 48 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.599 -17.708 -6.497 21.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.142 4.142 3 C 0.064 3.936 4 C -0.233 4.233 5 C -0.039 4.039 6 N -0.314 5.314 7 C 0.296 3.704 8 O -0.417 6.417 9 C 0.278 3.722 10 O -0.420 6.420 11 N -0.319 5.319 12 C 0.054 3.946 13 C 0.000 4.000 14 C -0.549 4.549 15 H 0.073 0.927 16 C -0.172 4.172 17 N -0.539 5.539 18 Si 0.771 3.229 19 H -0.196 1.196 20 H -0.211 1.211 21 H -0.201 1.201 22 C -0.188 4.188 23 C -0.218 4.218 24 C -0.080 4.080 25 C -0.030 4.030 26 O -0.292 6.292 27 H 0.071 0.929 28 H 0.086 0.914 29 H 0.074 0.926 30 H 0.110 0.890 31 H 0.097 0.903 32 H 0.091 0.909 33 H 0.058 0.942 34 H 0.097 0.903 35 H 0.117 0.883 36 H 0.112 0.888 37 H 0.250 0.750 38 H 0.069 0.931 39 H 0.066 0.934 40 H 0.070 0.930 41 H 0.096 0.904 42 H 0.083 0.917 43 H 0.103 0.897 44 H 0.110 0.890 45 H 0.146 0.854 46 H 0.105 0.895 47 H 0.070 0.930 48 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -9.791 -17.529 -6.924 21.238 hybrid contribution 0.065 1.005 1.268 1.620 sum -9.726 -16.523 -5.656 19.990 Atomic orbital electron populations 1.21715 0.94462 1.02216 1.02025 1.21506 0.97454 0.91302 1.03900 1.21967 0.90903 0.94977 0.85721 1.22405 1.02666 1.00238 0.98007 1.22643 0.95355 0.81235 1.04664 1.47980 1.39200 1.14677 1.29514 1.20046 0.80759 0.86328 0.83283 1.90721 1.61484 1.63297 1.26152 1.20286 0.80735 0.86552 0.84614 1.90488 1.60112 1.66679 1.24688 1.45912 1.45729 1.16784 1.23505 1.20899 0.97351 0.79681 0.96711 1.19055 0.86590 1.00032 0.94361 1.20664 1.33452 0.96418 1.04386 0.92708 1.25608 0.96039 0.97627 0.97886 1.70085 1.48409 1.06141 1.29283 0.85827 0.79174 0.77279 0.80630 1.19642 1.21111 1.20126 1.22461 1.02490 0.94600 0.99257 1.23000 1.03422 0.94654 1.00691 1.23459 0.94784 1.00857 0.88885 1.23112 0.92833 0.83262 1.03801 1.87976 1.76058 1.22944 1.42231 0.92851 0.91395 0.92612 0.89015 0.90280 0.90925 0.94194 0.90293 0.88297 0.88770 0.75006 0.93116 0.93443 0.92974 0.90428 0.91652 0.89749 0.89032 0.85403 0.89473 0.92969 0.85286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 9.41 71.98 0.68 -1.22 16 2 C -0.10 -1.40 5.21 30.59 0.16 -1.24 16 3 C 0.10 1.94 0.79 -10.69 -0.01 1.93 16 4 C -0.18 -3.51 7.74 71.98 0.56 -2.96 16 5 C 0.08 1.74 5.33 86.36 0.46 2.20 16 6 N -0.58 -15.37 2.54 -818.95 -2.08 -17.45 16 7 C 0.51 16.73 7.75 87.27 0.68 17.40 16 8 O -0.54 -19.12 15.97 -3.24 -0.05 -19.17 16 9 C 0.50 18.18 7.74 87.27 0.68 18.85 16 10 O -0.54 -20.77 13.21 -3.23 -0.04 -20.81 16 11 N -0.67 -25.91 5.51 -464.42 -2.56 -28.46 16 12 C 0.18 7.76 5.57 86.38 0.48 8.24 16 13 C 0.00 0.02 1.35 -52.93 -0.07 -0.05 16 14 C -0.51 -26.56 8.82 25.60 0.23 -26.33 16 15 H 0.05 2.84 7.82 -2.91 -0.02 2.82 16 16 C 0.03 1.57 5.40 84.65 0.46 2.02 16 17 N -0.90 -49.81 12.91 21.45 0.28 -49.54 16 18 Si 0.94 42.33 29.54 68.60 2.03 44.36 16 19 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 20 H -0.29 -12.65 7.11 99.48 0.71 -11.95 16 21 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 22 C -0.15 -6.58 9.38 30.60 0.29 -6.30 16 23 C -0.18 -7.07 9.83 30.60 0.30 -6.77 16 24 C 0.04 1.00 6.13 86.35 0.53 1.53 16 25 C 0.05 0.95 6.60 72.08 0.48 1.42 16 26 O -0.37 -7.59 9.56 -148.98 -1.42 -9.01 16 27 H 0.05 0.80 7.69 -2.39 -0.02 0.79 16 28 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.05 0.72 6.43 -2.39 -0.02 0.71 16 30 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.04 0.97 6.12 -2.39 -0.01 0.96 16 34 H 0.08 1.40 6.43 -2.39 -0.02 1.39 16 35 H 0.10 2.19 7.06 -2.39 -0.02 2.18 16 36 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 37 H 0.41 15.48 7.89 -92.71 -0.73 14.75 16 38 H 0.05 2.15 7.94 -2.39 -0.02 2.13 16 39 H 0.05 2.41 8.12 -2.38 -0.02 2.39 16 40 H 0.26 13.91 8.32 -92.71 -0.77 13.14 16 41 H 0.08 3.18 8.08 -2.39 -0.02 3.16 16 42 H 0.06 3.10 8.14 -2.39 -0.02 3.08 16 43 H 0.08 3.26 8.14 -2.39 -0.02 3.24 16 44 H 0.09 3.15 8.14 -2.39 -0.02 3.13 16 45 H 0.13 3.71 4.49 -34.80 -0.16 3.55 16 46 H 0.09 1.90 8.14 -2.38 -0.02 1.88 16 47 H 0.05 1.14 6.25 -2.38 -0.01 1.12 16 48 H 0.13 2.01 8.14 -2.39 -0.02 1.99 16 Total: -1.00 -60.01 381.69 2.12 -57.89 By element: Atomic # 1 Polarization: 33.37 SS G_CDS: 0.09 Total: 33.46 kcal Atomic # 6 Polarization: 2.86 SS G_CDS: 5.88 Total: 8.74 kcal Atomic # 7 Polarization: -91.09 SS G_CDS: -4.36 Total: -95.45 kcal Atomic # 8 Polarization: -47.47 SS G_CDS: -1.52 Total: -48.99 kcal Atomic # 14 Polarization: 42.33 SS G_CDS: 2.03 Total: 44.36 kcal Total: -60.01 2.12 -57.89 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326145476.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.254 kcal (2) G-P(sol) polarization free energy of solvation -60.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds