Wall clock time and date at job start Tue Mar 31 2020 14:12:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42899 * 114.00095 * 2 1 4 4 C 1.52998 * 109.52553 * 300.08525 * 3 2 1 5 5 C 1.53038 * 109.49743 * 180.02562 * 3 2 1 6 6 C 1.53032 * 109.53930 * 301.41873 * 5 3 2 7 7 C 1.53192 * 109.31414 * 298.63074 * 6 5 3 8 8 N 1.46928 * 108.77104 * 54.63810 * 7 6 5 9 9 C 1.34779 * 120.63148 * 126.37357 * 8 7 6 10 10 O 1.21347 * 119.99986 * 185.09990 * 9 8 7 11 11 C 1.49447 * 120.00024 * 5.08922 * 9 8 7 12 12 O 1.21355 * 119.99982 * 85.39025 * 11 9 8 13 13 N 1.34778 * 120.00616 * 265.39237 * 11 9 8 14 14 C 1.46493 * 120.00261 * 185.03144 * 13 11 9 15 15 C 1.53002 * 109.47164 * 184.69700 * 14 13 11 16 16 C 1.50701 * 115.55050 * 302.09941 * 15 14 13 17 17 H 1.07996 * 119.99857 * 86.63907 * 16 15 14 18 18 C 1.37876 * 119.99654 * 266.64006 * 16 15 14 19 19 N 1.31510 * 120.00266 * 5.72837 * 18 16 15 20 20 Si 1.86800 * 119.99726 * 185.73149 * 18 16 15 21 21 H 1.48501 * 109.47101 * 0.02562 * 20 18 16 22 22 H 1.48505 * 109.46942 * 119.99683 * 20 18 16 23 23 H 1.48499 * 109.47302 * 239.99929 * 20 18 16 24 24 C 1.53004 * 117.49803 * 87.76522 * 15 14 13 25 25 C 1.52998 * 117.50131 * 156.42232 * 15 14 13 26 26 C 1.46927 * 118.73868 * 306.64199 * 8 7 6 27 27 H 1.09000 * 109.47753 * 59.99412 * 1 2 3 28 28 H 1.08997 * 109.47456 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47270 * 299.99805 * 1 2 3 30 30 H 1.08996 * 109.47550 * 299.91776 * 4 3 2 31 31 H 1.09004 * 109.47124 * 59.91616 * 4 3 2 32 32 H 1.08996 * 109.47177 * 179.91480 * 4 3 2 33 33 H 1.08998 * 109.45978 * 181.39699 * 5 3 2 34 34 H 1.09002 * 109.45738 * 61.43840 * 5 3 2 35 35 H 1.09003 * 109.49988 * 178.68367 * 6 5 3 36 36 H 1.08993 * 109.50189 * 58.58398 * 6 5 3 37 37 H 1.08998 * 109.58836 * 294.85331 * 7 6 5 38 38 H 1.09002 * 109.70706 * 174.49510 * 7 6 5 39 39 H 0.97002 * 119.99333 * 5.02922 * 13 11 9 40 40 H 1.08997 * 109.47468 * 64.69830 * 14 13 11 41 41 H 1.09000 * 109.46815 * 304.69382 * 14 13 11 42 42 H 0.96999 * 120.00216 * 174.99442 * 19 18 16 43 43 H 1.09002 * 117.50286 * 215.00527 * 24 15 14 44 44 H 1.09002 * 117.49730 * 0.02586 * 24 15 14 45 45 H 1.09000 * 117.49556 * 359.97438 * 25 15 14 46 46 H 1.09001 * 117.49929 * 144.99987 * 25 15 14 47 47 H 1.09000 * 109.58682 * 173.14951 * 26 8 7 48 48 H 1.09000 * 109.58643 * 293.57228 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 1.5579 2.0666 -1.2477 5 6 3.5359 1.1853 -0.0006 6 6 3.9876 0.3954 1.2298 7 6 3.5622 1.1441 2.4968 8 7 2.1152 1.3916 2.4364 9 6 1.3102 1.0083 3.4471 10 8 0.1075 1.1341 3.3460 11 6 1.8988 0.4282 4.6923 12 8 2.2807 1.1608 5.5813 13 7 2.0055 -0.9084 4.8282 14 6 2.4793 -1.4809 6.0906 15 6 2.6184 -2.9974 5.9425 16 6 1.3632 -3.7293 5.5427 17 1 1.1096 -3.8356 4.4983 18 6 0.5386 -4.2631 6.5102 19 7 0.7858 -4.0379 7.7821 20 14 -0.9295 -5.3062 6.0144 21 1 -0.9866 -5.4086 4.5340 22 1 -0.7917 -6.6644 6.5990 23 1 -2.1769 -4.6756 6.5160 24 6 3.9492 -3.5364 5.4140 25 6 3.5829 -3.7142 6.8895 26 6 1.5616 2.0594 1.2505 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8795 1.5276 -2.1388 31 1 0.4712 2.1519 -1.2473 32 1 2.0005 3.0627 -1.2461 33 1 3.9786 2.1810 0.0244 34 1 3.8589 0.6671 -0.9036 35 1 5.0724 0.2901 1.2164 36 1 3.5257 -0.5917 1.2182 37 1 4.0933 2.0942 2.5554 38 1 3.7935 0.5414 3.3750 39 1 1.7685 -1.4913 4.0899 40 1 1.7640 -1.2573 6.8821 41 1 3.4480 -1.0502 6.3439 42 1 0.1664 -4.3516 8.4595 43 1 3.9169 -4.4204 4.7771 44 1 4.7257 -2.8107 5.1722 45 1 4.1186 -3.1053 7.6177 46 1 3.3095 -4.7152 7.2234 47 1 0.4730 2.0584 1.3054 48 1 1.9262 3.0856 1.2055 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326145615.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:22 Heat of formation + Delta-G solvation = -89.213250 kcal Electronic energy + Delta-G solvation = -29431.471073 eV Core-core repulsion = 25487.489335 eV Total energy + Delta-G solvation = -3943.981738 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.90774 -39.41062 -37.94202 -36.67986 -36.30900 -33.52600 -33.13429 -31.96576 -31.79542 -28.01003 -27.34644 -26.54321 -25.77364 -25.23111 -22.77034 -22.33826 -21.15675 -20.22914 -19.66316 -18.95911 -17.75208 -16.80594 -16.60643 -16.29111 -15.74626 -15.59718 -15.43017 -14.85663 -14.55931 -14.48062 -14.29437 -14.11235 -13.87048 -13.41518 -13.22257 -13.10644 -12.89922 -12.76550 -12.61911 -12.39510 -12.11575 -11.94557 -11.63990 -11.52851 -11.24862 -11.15159 -11.02066 -10.99631 -10.95147 -10.52669 -10.52204 -10.26583 -9.80731 -9.65387 -9.21507 -9.04873 -8.76115 -8.53664 -8.43344 -8.16460 -6.10353 -4.19903 2.33361 2.46867 2.92447 3.25409 3.34592 3.37134 3.59702 3.77075 4.31263 4.34969 4.46786 4.54948 4.76304 4.84210 4.93241 5.12244 5.15091 5.18568 5.20658 5.30053 5.33609 5.35226 5.38824 5.45506 5.50422 5.59261 5.70408 5.80475 5.82067 5.87726 5.95672 6.15690 6.26244 6.27771 6.39240 6.44528 6.65523 6.74477 7.02432 7.05980 7.08270 7.13442 7.32345 7.49366 7.78850 7.91095 7.97174 8.29175 8.46896 8.81745 9.48040 10.96854 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.014284 B = 0.003895 C = 0.003609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1959.747834 B = 7187.352193 C = 7756.173609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.367 6.367 3 C 0.099 3.901 4 C -0.176 4.176 5 C -0.103 4.103 6 C -0.133 4.133 7 C 0.106 3.894 8 N -0.591 5.591 9 C 0.520 3.480 10 O -0.516 6.516 11 C 0.507 3.493 12 O -0.532 6.532 13 N -0.677 5.677 14 C 0.159 3.841 15 C 0.021 3.979 16 C -0.502 4.502 17 H 0.061 0.939 18 C 0.075 3.925 19 N -0.874 5.874 20 Si 0.889 3.111 21 H -0.272 1.272 22 H -0.283 1.283 23 H -0.283 1.283 24 C -0.211 4.211 25 C -0.137 4.137 26 C 0.084 3.916 27 H 0.041 0.959 28 H 0.086 0.914 29 H 0.054 0.946 30 H 0.069 0.931 31 H 0.063 0.937 32 H 0.069 0.931 33 H 0.077 0.923 34 H 0.075 0.925 35 H 0.079 0.921 36 H 0.083 0.917 37 H 0.073 0.927 38 H 0.088 0.912 39 H 0.408 0.592 40 H 0.071 0.929 41 H 0.047 0.953 42 H 0.262 0.738 43 H 0.079 0.921 44 H 0.064 0.936 45 H 0.064 0.936 46 H 0.088 0.912 47 H 0.099 0.901 48 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.910 10.793 -17.001 20.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.286 6.286 3 C 0.058 3.942 4 C -0.234 4.234 5 C -0.141 4.141 6 C -0.171 4.171 7 C -0.016 4.016 8 N -0.326 5.326 9 C 0.303 3.697 10 O -0.390 6.390 11 C 0.287 3.713 12 O -0.409 6.409 13 N -0.327 5.327 14 C 0.037 3.963 15 C 0.020 3.980 16 C -0.539 4.539 17 H 0.079 0.921 18 C -0.129 4.129 19 N -0.510 5.510 20 Si 0.717 3.283 21 H -0.196 1.196 22 H -0.209 1.209 23 H -0.209 1.209 24 C -0.248 4.248 25 C -0.175 4.175 26 C -0.039 4.039 27 H 0.059 0.941 28 H 0.105 0.895 29 H 0.072 0.928 30 H 0.088 0.912 31 H 0.082 0.918 32 H 0.087 0.913 33 H 0.096 0.904 34 H 0.094 0.906 35 H 0.098 0.902 36 H 0.101 0.899 37 H 0.091 0.909 38 H 0.106 0.894 39 H 0.243 0.757 40 H 0.089 0.911 41 H 0.065 0.935 42 H 0.071 0.929 43 H 0.097 0.903 44 H 0.083 0.917 45 H 0.083 0.917 46 H 0.106 0.894 47 H 0.118 0.882 48 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 5.583 11.095 -16.161 20.383 hybrid contribution -1.248 -0.582 -0.422 1.440 sum 4.336 10.512 -16.584 20.108 Atomic orbital electron populations 1.22895 0.81185 1.03210 1.00421 1.87988 1.19692 1.26065 1.94858 1.21784 0.94669 0.84413 0.93304 1.22349 1.02251 1.00890 0.97893 1.21530 0.91982 1.01191 0.99350 1.21865 1.01415 1.00581 0.93233 1.21834 0.79393 1.00811 0.99600 1.47924 1.08272 1.58836 1.17581 1.20662 0.86978 0.78517 0.83524 1.90745 1.13916 1.54805 1.79531 1.19903 0.79759 0.84066 0.87606 1.90772 1.48606 1.59860 1.41699 1.46058 1.63451 1.04805 1.18396 1.21173 0.97443 0.93991 0.83732 1.19018 0.89601 0.89090 1.00262 1.20352 1.05785 1.34984 0.92800 0.92104 1.24977 0.97516 0.95497 0.94915 1.69987 1.35936 1.45346 0.99686 0.86578 0.82549 0.80288 0.78880 1.19634 1.20927 1.20948 1.23100 1.00618 1.02820 0.98292 1.22424 1.02724 1.02052 0.90304 1.22204 1.01543 0.95868 0.84301 0.94068 0.89515 0.92790 0.91182 0.91807 0.91251 0.90435 0.90602 0.90221 0.89861 0.90851 0.89399 0.75679 0.91075 0.93520 0.92851 0.90289 0.91720 0.91733 0.89366 0.88244 0.90370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 10.22 101.05 1.03 1.25 16 2 O -0.37 -4.43 9.54 -35.23 -0.34 -4.76 16 3 C 0.10 0.93 0.73 -90.72 -0.07 0.87 16 4 C -0.18 -1.25 8.26 37.16 0.31 -0.94 16 5 C -0.10 -0.83 4.92 -26.70 -0.13 -0.96 16 6 C -0.13 -1.24 5.94 -26.62 -0.16 -1.40 16 7 C 0.11 1.18 6.33 -3.71 -0.02 1.16 16 8 N -0.59 -7.96 2.92 -173.54 -0.51 -8.47 16 9 C 0.52 9.17 7.54 -11.59 -0.09 9.08 16 10 O -0.52 -10.31 15.93 5.50 0.09 -10.22 16 11 C 0.51 9.94 5.62 -11.59 -0.07 9.88 16 12 O -0.53 -11.78 17.08 5.49 0.09 -11.69 16 13 N -0.68 -13.34 5.43 -60.73 -0.33 -13.67 16 14 C 0.16 3.49 5.56 -4.04 -0.02 3.46 16 15 C 0.02 0.48 1.64 -155.66 -0.26 0.23 16 16 C -0.50 -12.77 8.29 -34.44 -0.29 -13.05 16 17 H 0.06 1.54 7.82 -52.49 -0.41 1.13 16 18 C 0.08 1.99 5.36 -17.82 -0.10 1.89 16 19 N -0.87 -23.99 12.41 55.43 0.69 -23.30 16 20 Si 0.89 20.70 29.54 -169.99 -5.02 15.68 16 21 H -0.27 -6.24 7.11 56.52 0.40 -5.83 16 22 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 23 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 24 C -0.21 -4.25 9.94 -26.69 -0.27 -4.51 16 25 C -0.14 -3.06 8.99 -26.70 -0.24 -3.30 16 26 C 0.08 0.92 4.93 -3.93 -0.02 0.90 16 27 H 0.04 0.37 6.42 -51.93 -0.33 0.04 16 28 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.05 0.70 5.70 -51.93 -0.30 0.40 16 30 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.45 6.54 -51.93 -0.34 0.11 16 32 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 34 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.08 0.95 7.61 -51.93 -0.40 0.56 16 37 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 38 H 0.09 1.12 6.37 -51.93 -0.33 0.79 16 39 H 0.41 7.74 8.07 -40.82 -0.33 7.41 16 40 H 0.07 1.78 8.14 -51.93 -0.42 1.35 16 41 H 0.05 0.97 8.07 -51.93 -0.42 0.55 16 42 H 0.26 6.92 8.32 -40.82 -0.34 6.58 16 43 H 0.08 1.58 8.14 -51.93 -0.42 1.16 16 44 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 45 H 0.06 1.36 8.14 -51.93 -0.42 0.93 16 46 H 0.09 2.14 8.00 -51.93 -0.42 1.72 16 47 H 0.10 1.23 5.11 -51.93 -0.27 0.97 16 48 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 384.17 15.07 5.79 5.79 Total: -1.00 -30.79 384.17 -7.66 -38.45 By element: Atomic # 1 Polarization: 15.37 SS G_CDS: -7.74 Total: 7.63 kcal Atomic # 6 Polarization: 4.94 SS G_CDS: -0.38 Total: 4.56 kcal Atomic # 7 Polarization: -45.29 SS G_CDS: -0.15 Total: -45.44 kcal Atomic # 8 Polarization: -26.52 SS G_CDS: -0.15 Total: -26.67 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -30.79 -7.66 -38.45 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326145615.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.764 kcal (2) G-P(sol) polarization free energy of solvation -30.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds