Wall clock time and date at job start Tue Mar 31 2020 14:12:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42899 * 114.00095 * 2 1 4 4 C 1.52998 * 109.52553 * 300.08525 * 3 2 1 5 5 C 1.53038 * 109.49743 * 180.02562 * 3 2 1 6 6 C 1.53032 * 109.53930 * 301.41873 * 5 3 2 7 7 C 1.53192 * 109.31414 * 298.63074 * 6 5 3 8 8 N 1.46928 * 108.77104 * 54.63810 * 7 6 5 9 9 C 1.34779 * 120.63148 * 126.37357 * 8 7 6 10 10 O 1.21347 * 119.99986 * 185.09990 * 9 8 7 11 11 C 1.49447 * 120.00024 * 5.08922 * 9 8 7 12 12 O 1.21355 * 119.99982 * 85.39025 * 11 9 8 13 13 N 1.34778 * 120.00616 * 265.39237 * 11 9 8 14 14 C 1.46493 * 120.00261 * 185.03144 * 13 11 9 15 15 C 1.53002 * 109.47164 * 184.69700 * 14 13 11 16 16 C 1.50701 * 115.55050 * 302.09941 * 15 14 13 17 17 H 1.07996 * 119.99857 * 86.63907 * 16 15 14 18 18 C 1.37876 * 119.99654 * 266.64006 * 16 15 14 19 19 N 1.31510 * 120.00266 * 5.72837 * 18 16 15 20 20 Si 1.86800 * 119.99726 * 185.73149 * 18 16 15 21 21 H 1.48501 * 109.47101 * 0.02562 * 20 18 16 22 22 H 1.48505 * 109.46942 * 119.99683 * 20 18 16 23 23 H 1.48499 * 109.47302 * 239.99929 * 20 18 16 24 24 C 1.53004 * 117.49803 * 87.76522 * 15 14 13 25 25 C 1.52998 * 117.50131 * 156.42232 * 15 14 13 26 26 C 1.46927 * 118.73868 * 306.64199 * 8 7 6 27 27 H 1.09000 * 109.47753 * 59.99412 * 1 2 3 28 28 H 1.08997 * 109.47456 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47270 * 299.99805 * 1 2 3 30 30 H 1.08996 * 109.47550 * 299.91776 * 4 3 2 31 31 H 1.09004 * 109.47124 * 59.91616 * 4 3 2 32 32 H 1.08996 * 109.47177 * 179.91480 * 4 3 2 33 33 H 1.08998 * 109.45978 * 181.39699 * 5 3 2 34 34 H 1.09002 * 109.45738 * 61.43840 * 5 3 2 35 35 H 1.09003 * 109.49988 * 178.68367 * 6 5 3 36 36 H 1.08993 * 109.50189 * 58.58398 * 6 5 3 37 37 H 1.08998 * 109.58836 * 294.85331 * 7 6 5 38 38 H 1.09002 * 109.70706 * 174.49510 * 7 6 5 39 39 H 0.97002 * 119.99333 * 5.02922 * 13 11 9 40 40 H 1.08997 * 109.47468 * 64.69830 * 14 13 11 41 41 H 1.09000 * 109.46815 * 304.69382 * 14 13 11 42 42 H 0.96999 * 120.00216 * 174.99442 * 19 18 16 43 43 H 1.09002 * 117.50286 * 215.00527 * 24 15 14 44 44 H 1.09002 * 117.49730 * 0.02586 * 24 15 14 45 45 H 1.09000 * 117.49556 * 359.97438 * 25 15 14 46 46 H 1.09001 * 117.49929 * 144.99987 * 25 15 14 47 47 H 1.09000 * 109.58682 * 173.14951 * 26 8 7 48 48 H 1.09000 * 109.58643 * 293.57228 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 1.5579 2.0666 -1.2477 5 6 3.5359 1.1853 -0.0006 6 6 3.9876 0.3954 1.2298 7 6 3.5622 1.1441 2.4968 8 7 2.1152 1.3916 2.4364 9 6 1.3102 1.0083 3.4471 10 8 0.1075 1.1341 3.3460 11 6 1.8988 0.4282 4.6923 12 8 2.2807 1.1608 5.5813 13 7 2.0055 -0.9084 4.8282 14 6 2.4793 -1.4809 6.0906 15 6 2.6184 -2.9974 5.9425 16 6 1.3632 -3.7293 5.5427 17 1 1.1096 -3.8356 4.4983 18 6 0.5386 -4.2631 6.5102 19 7 0.7858 -4.0379 7.7821 20 14 -0.9295 -5.3062 6.0144 21 1 -0.9866 -5.4086 4.5340 22 1 -0.7917 -6.6644 6.5990 23 1 -2.1769 -4.6756 6.5160 24 6 3.9492 -3.5364 5.4140 25 6 3.5829 -3.7142 6.8895 26 6 1.5616 2.0594 1.2505 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8795 1.5276 -2.1388 31 1 0.4712 2.1519 -1.2473 32 1 2.0005 3.0627 -1.2461 33 1 3.9786 2.1810 0.0244 34 1 3.8589 0.6671 -0.9036 35 1 5.0724 0.2901 1.2164 36 1 3.5257 -0.5917 1.2182 37 1 4.0933 2.0942 2.5554 38 1 3.7935 0.5414 3.3750 39 1 1.7685 -1.4913 4.0899 40 1 1.7640 -1.2573 6.8821 41 1 3.4480 -1.0502 6.3439 42 1 0.1664 -4.3516 8.4595 43 1 3.9169 -4.4204 4.7771 44 1 4.7257 -2.8107 5.1722 45 1 4.1186 -3.1053 7.6177 46 1 3.3095 -4.7152 7.2234 47 1 0.4730 2.0584 1.3054 48 1 1.9262 3.0856 1.2055 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326145615.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:21 Heat of formation + Delta-G solvation = -109.928636 kcal Electronic energy + Delta-G solvation = -29432.369360 eV Core-core repulsion = 25487.489335 eV Total energy + Delta-G solvation = -3944.880024 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.10810 -40.62962 -39.34580 -38.43019 -37.30876 -35.21801 -34.04029 -33.94827 -32.58714 -29.28616 -28.20420 -27.87338 -27.27533 -26.57002 -24.11211 -23.16102 -22.87416 -21.51247 -21.10221 -20.32290 -19.05262 -18.23398 -17.97152 -17.66601 -17.03816 -16.70415 -16.49689 -16.41099 -16.04415 -15.83470 -15.54258 -15.38947 -15.00359 -14.87950 -14.52766 -14.31450 -13.91916 -13.80196 -13.63748 -13.51406 -13.47979 -13.05192 -12.94061 -12.88462 -12.77744 -12.64977 -12.36855 -12.31189 -11.99935 -11.95637 -11.80825 -11.46948 -11.26642 -10.92883 -10.87405 -10.57394 -10.45471 -10.19500 -9.94066 -9.78678 -8.12239 -6.25180 0.94799 1.07147 1.38311 1.42649 1.46613 1.51221 2.39026 2.43801 2.85110 3.14724 3.28095 3.55454 3.63688 3.75014 3.82289 4.02478 4.13367 4.21208 4.32961 4.41082 4.47318 4.48033 4.52278 4.59686 4.62903 4.67614 4.71495 4.76454 4.81159 4.88642 4.91359 4.93645 5.04418 5.05053 5.20344 5.24090 5.29913 5.31587 5.34696 5.43093 5.55736 5.70271 5.75366 5.92330 6.29540 6.32323 6.35522 6.61900 6.81995 6.86459 7.44652 8.94607 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.014284 B = 0.003895 C = 0.003609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1959.747834 B = 7187.352193 C = 7756.173609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.388 6.388 3 C 0.095 3.905 4 C -0.171 4.171 5 C -0.101 4.101 6 C -0.127 4.127 7 C 0.098 3.902 8 N -0.577 5.577 9 C 0.518 3.482 10 O -0.550 6.550 11 C 0.510 3.490 12 O -0.560 6.560 13 N -0.672 5.672 14 C 0.174 3.826 15 C -0.003 4.003 16 C -0.505 4.505 17 H 0.059 0.941 18 C 0.029 3.971 19 N -0.904 5.904 20 Si 0.943 3.057 21 H -0.265 1.265 22 H -0.281 1.281 23 H -0.289 1.289 24 C -0.176 4.176 25 C -0.146 4.146 26 C 0.077 3.923 27 H 0.064 0.936 28 H 0.081 0.919 29 H 0.031 0.969 30 H 0.075 0.925 31 H 0.060 0.940 32 H 0.091 0.909 33 H 0.105 0.895 34 H 0.085 0.915 35 H 0.105 0.895 36 H 0.057 0.943 37 H 0.101 0.899 38 H 0.069 0.931 39 H 0.411 0.589 40 H 0.032 0.968 41 H 0.059 0.941 42 H 0.259 0.741 43 H 0.082 0.918 44 H 0.094 0.906 45 H 0.074 0.926 46 H 0.063 0.937 47 H 0.082 0.918 48 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.582 11.833 -19.816 24.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.307 6.307 3 C 0.055 3.945 4 C -0.228 4.228 5 C -0.138 4.138 6 C -0.165 4.165 7 C -0.023 4.023 8 N -0.310 5.310 9 C 0.301 3.699 10 O -0.427 6.427 11 C 0.290 3.710 12 O -0.440 6.440 13 N -0.322 5.322 14 C 0.050 3.950 15 C -0.004 4.004 16 C -0.543 4.543 17 H 0.077 0.923 18 C -0.173 4.173 19 N -0.541 5.541 20 Si 0.770 3.230 21 H -0.189 1.189 22 H -0.207 1.207 23 H -0.216 1.216 24 C -0.213 4.213 25 C -0.184 4.184 26 C -0.045 4.045 27 H 0.082 0.918 28 H 0.100 0.900 29 H 0.050 0.950 30 H 0.094 0.906 31 H 0.079 0.921 32 H 0.110 0.890 33 H 0.124 0.876 34 H 0.104 0.896 35 H 0.123 0.877 36 H 0.076 0.924 37 H 0.119 0.881 38 H 0.087 0.913 39 H 0.247 0.753 40 H 0.050 0.950 41 H 0.077 0.923 42 H 0.068 0.932 43 H 0.101 0.899 44 H 0.112 0.888 45 H 0.093 0.907 46 H 0.082 0.918 47 H 0.100 0.900 48 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 7.295 12.134 -19.037 23.724 hybrid contribution -1.701 -0.860 0.411 1.950 sum 5.594 11.273 -18.626 22.479 Atomic orbital electron populations 1.22847 0.81235 1.02948 1.00431 1.87964 1.19825 1.27968 1.94943 1.22034 0.95678 0.83462 0.93364 1.22315 1.02246 1.01718 0.96538 1.21611 0.90654 1.02647 0.98863 1.21830 1.02715 0.99123 0.92803 1.22118 0.77910 1.02264 1.00028 1.48027 1.09031 1.57009 1.16908 1.20245 0.86802 0.79088 0.83793 1.90733 1.15076 1.56769 1.80142 1.20310 0.78838 0.83626 0.88192 1.90742 1.49860 1.60389 1.42965 1.45947 1.63427 1.05109 1.17706 1.20829 0.96869 0.93702 0.83551 1.19040 0.90057 0.89265 1.02061 1.20643 1.06644 1.34427 0.92597 0.92286 1.25628 0.99899 0.96708 0.95022 1.70091 1.36849 1.46748 1.00414 0.85736 0.79653 0.78865 0.78787 1.18895 1.20656 1.21560 1.23081 0.99006 1.02875 0.96321 1.22342 1.03232 1.00857 0.91935 1.22530 1.00784 0.97414 0.83776 0.91769 0.90021 0.95008 0.90584 0.92103 0.89039 0.87638 0.89592 0.87714 0.92393 0.88104 0.91260 0.75272 0.95000 0.92280 0.93166 0.89925 0.88765 0.90743 0.91799 0.89955 0.87419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.48 10.22 113.37 1.16 1.63 16 2 O -0.39 -8.84 9.54 -148.98 -1.42 -10.26 16 3 C 0.09 1.54 0.73 -10.86 -0.01 1.53 16 4 C -0.17 -1.83 8.26 71.98 0.59 -1.24 16 5 C -0.10 -1.22 4.92 30.62 0.15 -1.07 16 6 C -0.13 -1.99 5.94 30.67 0.18 -1.81 16 7 C 0.10 1.97 6.33 86.36 0.55 2.52 16 8 N -0.58 -14.84 2.92 -821.31 -2.40 -17.24 16 9 C 0.52 18.44 7.54 87.27 0.66 19.09 16 10 O -0.55 -22.56 15.93 -3.24 -0.05 -22.62 16 11 C 0.51 20.29 5.62 87.27 0.49 20.78 16 12 O -0.56 -25.21 17.08 -3.26 -0.06 -25.27 16 13 N -0.67 -26.87 5.43 -464.42 -2.52 -29.39 16 14 C 0.17 7.73 5.56 86.38 0.48 8.21 16 15 C 0.00 -0.16 1.64 -52.93 -0.09 -0.25 16 16 C -0.51 -25.93 8.29 25.60 0.21 -25.72 16 17 H 0.06 2.98 7.82 -2.91 -0.02 2.96 16 18 C 0.03 1.53 5.36 84.66 0.45 1.98 16 19 N -0.90 -50.89 12.41 21.45 0.27 -50.63 16 20 Si 0.94 43.08 29.54 68.60 2.03 45.10 16 21 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 22 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 23 H -0.29 -13.39 7.11 99.48 0.71 -12.69 16 24 C -0.18 -6.76 9.94 30.62 0.30 -6.46 16 25 C -0.15 -6.47 8.99 30.62 0.28 -6.20 16 26 C 0.08 1.53 4.93 86.22 0.43 1.96 16 27 H 0.06 1.07 6.42 -2.39 -0.02 1.06 16 28 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 29 H 0.03 0.84 5.70 -2.39 -0.01 0.82 16 30 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.06 0.70 6.54 -2.39 -0.02 0.68 16 32 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.11 0.74 8.14 -2.39 -0.02 0.72 16 34 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.06 1.23 7.61 -2.39 -0.02 1.21 16 37 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 38 H 0.07 1.67 6.37 -2.39 -0.02 1.66 16 39 H 0.41 15.83 8.07 -92.71 -0.75 15.08 16 40 H 0.03 1.65 8.14 -2.39 -0.02 1.64 16 41 H 0.06 2.45 8.07 -2.39 -0.02 2.43 16 42 H 0.26 14.11 8.32 -92.71 -0.77 13.34 16 43 H 0.08 3.14 8.14 -2.39 -0.02 3.12 16 44 H 0.09 3.09 8.14 -2.39 -0.02 3.07 16 45 H 0.07 3.11 8.14 -2.39 -0.02 3.09 16 46 H 0.06 3.14 8.00 -2.39 -0.02 3.12 16 47 H 0.08 1.99 5.11 -2.39 -0.01 1.98 16 48 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 Total: -1.00 -68.61 384.17 1.90 -66.71 By element: Atomic # 1 Polarization: 28.41 SS G_CDS: 0.22 Total: 28.63 kcal Atomic # 6 Polarization: 9.12 SS G_CDS: 5.84 Total: 14.96 kcal Atomic # 7 Polarization: -92.60 SS G_CDS: -4.65 Total: -97.26 kcal Atomic # 8 Polarization: -56.62 SS G_CDS: -1.53 Total: -58.15 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.10 kcal Total: -68.61 1.90 -66.71 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326145615.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.218 kcal (2) G-P(sol) polarization free energy of solvation -68.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds