Wall clock time and date at job start Tue Mar 31 2020 14:10:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.49902 * 2 1 4 4 C 1.53044 * 109.49671 * 239.90387 * 2 1 3 5 5 C 1.53044 * 109.53859 * 301.41732 * 4 2 1 6 6 C 1.53195 * 109.30652 * 298.62972 * 5 4 2 7 7 N 1.46929 * 108.77325 * 54.63907 * 6 5 4 8 8 C 1.34776 * 120.62987 * 126.36725 * 7 6 5 9 9 O 1.21356 * 120.00124 * 351.34207 * 8 7 6 10 10 C 1.49457 * 120.00076 * 171.34147 * 8 7 6 11 11 O 1.21348 * 119.99650 * 353.16023 * 10 8 7 12 12 N 1.34775 * 119.99919 * 173.16693 * 10 8 7 13 13 C 1.47429 * 125.65198 * 0.02562 * 12 10 8 14 14 C 1.54903 * 104.83191 * 204.09808 * 13 12 10 15 15 C 1.55155 * 101.58509 * 322.98798 * 14 13 12 16 16 O 1.42901 * 110.72262 * 277.14488 * 15 14 13 17 17 C 1.50690 * 110.72427 * 154.04283 * 15 14 13 18 18 H 1.08004 * 120.00138 * 0.02562 * 17 15 14 19 19 C 1.37881 * 120.00593 * 180.02562 * 17 15 14 20 20 N 1.31517 * 119.99473 * 0.02562 * 19 17 15 21 21 Si 1.86798 * 120.00334 * 180.02562 * 19 17 15 22 22 H 1.48496 * 109.47011 * 0.02562 * 21 19 17 23 23 H 1.48497 * 109.47043 * 120.00026 * 21 19 17 24 24 H 1.48501 * 109.47000 * 239.99823 * 21 19 17 25 25 C 1.47020 * 125.64675 * 179.71709 * 12 10 8 26 26 C 1.46920 * 118.74013 * 306.38455 * 7 6 5 27 27 H 1.08999 * 109.46730 * 299.93299 * 1 2 3 28 28 H 1.08994 * 109.47085 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.47217 * 59.93371 * 1 2 3 30 30 H 1.08994 * 109.47082 * 60.00190 * 3 2 1 31 31 H 1.08999 * 109.47178 * 180.02562 * 3 2 1 32 32 H 1.09004 * 109.46845 * 300.00300 * 3 2 1 33 33 H 1.09006 * 109.45764 * 61.42977 * 4 2 1 34 34 H 1.08998 * 109.46171 * 181.39302 * 4 2 1 35 35 H 1.08995 * 109.49670 * 178.68704 * 5 4 2 36 36 H 1.08998 * 109.50008 * 58.58220 * 5 4 2 37 37 H 1.08995 * 109.59397 * 294.84920 * 6 5 4 38 38 H 1.09006 * 109.58417 * 174.42230 * 6 5 4 39 39 H 1.09007 * 110.36439 * 322.93800 * 13 12 10 40 40 H 1.08998 * 110.36434 * 85.14408 * 13 12 10 41 41 H 1.08997 * 111.00572 * 81.06680 * 14 13 12 42 42 H 1.09005 * 111.00308 * 204.91725 * 14 13 12 43 43 H 0.96704 * 114.00140 * 179.97438 * 16 15 14 44 44 H 0.96995 * 119.99922 * 180.02562 * 20 19 17 45 45 H 1.09000 * 109.88072 * 298.39108 * 25 12 10 46 46 H 1.09006 * 109.88168 * 59.55303 * 25 12 10 47 47 H 1.08994 * 109.58802 * 293.82497 * 26 7 6 48 48 H 1.09002 * 109.70505 * 173.46812 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0408 1.4423 0.0000 4 6 2.0408 -0.7234 -1.2482 5 6 1.5029 -2.1561 -1.2655 6 6 2.0141 -2.9040 -0.0301 7 7 1.6516 -2.1378 1.1701 8 6 0.9741 -2.7212 2.1786 9 8 0.5209 -3.8383 2.0388 10 6 0.7809 -1.9925 3.4690 11 8 1.3370 -0.9301 3.6550 12 7 -0.0109 -2.5153 4.4262 13 6 -0.7427 -3.7918 4.3335 14 6 -1.9221 -3.6457 5.3271 15 6 -1.2607 -2.8457 6.4803 16 8 -0.5485 -3.7197 7.3585 17 6 -2.2931 -2.0542 7.2408 18 1 -3.3320 -2.1007 6.9489 19 6 -1.9118 -1.2707 8.3093 20 7 -0.6467 -1.2137 8.6645 21 14 -3.1918 -0.2901 9.2525 22 1 -4.5321 -0.5251 8.6580 23 1 -3.1982 -0.7221 10.6732 24 1 -2.8625 1.1559 9.1763 25 6 -0.2827 -1.9103 5.7383 26 6 2.0414 -0.7235 1.2497 27 1 -0.3633 0.5128 0.8906 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5148 -0.8893 30 1 1.6777 1.9562 0.8899 31 1 3.1307 1.4418 -0.0005 32 1 1.6776 1.9563 -0.8900 33 1 1.6987 -0.1964 -2.1389 34 1 3.1305 -0.7448 -1.2352 35 1 1.8480 -2.6634 -2.1664 36 1 0.4132 -2.1358 -1.2535 37 1 3.0980 -3.0044 -0.0860 38 1 1.5554 -3.8919 0.0147 39 1 -1.1164 -3.9421 3.3206 40 1 -0.0982 -4.6206 4.6262 41 1 -2.7416 -3.0825 4.8807 42 1 -2.2637 -4.6210 5.6740 43 1 -0.1161 -3.2688 8.0966 44 1 -0.3784 -0.6628 9.4164 45 1 0.6450 -1.8173 6.3029 46 1 -0.7390 -0.9291 5.6067 47 1 3.1275 -0.6460 1.2981 48 1 1.6028 -0.2709 2.1391 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326213103.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:10:22 Heat of formation + Delta-G solvation = -108.811834 kcal Electronic energy + Delta-G solvation = -29572.332521 eV Core-core repulsion = 25627.500924 eV Total energy + Delta-G solvation = -3944.831596 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.88795 -39.18251 -37.90327 -37.32935 -34.61219 -33.94502 -32.29126 -32.19817 -30.19434 -28.00285 -27.42008 -26.96560 -26.48081 -25.26682 -23.55298 -22.54143 -21.10499 -19.67198 -19.30604 -18.54632 -17.26293 -16.84025 -16.67751 -15.94593 -15.55462 -15.22726 -15.05512 -14.72288 -14.53559 -14.46996 -14.09097 -13.81974 -13.32567 -13.07890 -13.03765 -13.00259 -12.81770 -12.41053 -12.21399 -12.06123 -11.89763 -11.77304 -11.61630 -11.55237 -11.25669 -11.12116 -11.08261 -10.88534 -10.75602 -10.59740 -10.55177 -10.50007 -10.38578 -10.10581 -9.36084 -8.86982 -8.71819 -8.63268 -8.34778 -8.03956 -6.33781 -4.42336 1.75708 2.57023 3.17652 3.26718 3.30374 3.51843 3.74039 4.23441 4.44194 4.52828 4.64484 4.69123 4.84533 4.94532 5.06644 5.21959 5.25868 5.45966 5.48876 5.50456 5.55412 5.60656 5.70985 5.77699 5.79956 5.81963 5.85976 5.88973 5.93224 5.99169 6.03392 6.11002 6.18450 6.28748 6.29935 6.45811 6.49387 6.74605 6.79562 6.83870 7.16361 7.21195 7.30015 7.69343 7.79282 7.97914 8.03687 8.40935 8.61910 9.27094 9.40571 10.74074 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.019261 B = 0.003464 C = 0.003163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1453.332064 B = 8080.215079 C = 8848.941613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.081 4.081 3 C -0.138 4.138 4 C -0.109 4.109 5 C -0.136 4.136 6 C 0.108 3.892 7 N -0.584 5.584 8 C 0.512 3.488 9 O -0.521 6.521 10 C 0.507 3.493 11 O -0.530 6.530 12 N -0.572 5.572 13 C 0.102 3.898 14 C -0.121 4.121 15 C 0.248 3.752 16 O -0.585 6.585 17 C -0.536 4.536 18 H 0.069 0.931 19 C 0.070 3.930 20 N -0.896 5.896 21 Si 0.905 3.095 22 H -0.271 1.271 23 H -0.281 1.281 24 H -0.281 1.281 25 C 0.098 3.902 26 C 0.079 3.921 27 H 0.057 0.943 28 H 0.056 0.944 29 H 0.053 0.947 30 H 0.061 0.939 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.073 0.927 36 H 0.071 0.929 37 H 0.068 0.932 38 H 0.093 0.907 39 H 0.082 0.918 40 H 0.070 0.930 41 H 0.076 0.924 42 H 0.079 0.921 43 H 0.386 0.614 44 H 0.271 0.729 45 H 0.070 0.930 46 H 0.072 0.928 47 H 0.064 0.936 48 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.083 1.253 -17.690 18.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.082 4.082 3 C -0.196 4.196 4 C -0.147 4.147 5 C -0.174 4.174 6 C -0.014 4.014 7 N -0.318 5.318 8 C 0.295 3.705 9 O -0.397 6.397 10 C 0.290 3.710 11 O -0.410 6.410 12 N -0.303 5.303 13 C -0.020 4.020 14 C -0.159 4.159 15 C 0.208 3.792 16 O -0.395 6.395 17 C -0.574 4.574 18 H 0.087 0.913 19 C -0.133 4.133 20 N -0.536 5.536 21 Si 0.732 3.268 22 H -0.195 1.195 23 H -0.207 1.207 24 H -0.207 1.207 25 C -0.023 4.023 26 C -0.043 4.043 27 H 0.076 0.924 28 H 0.075 0.925 29 H 0.072 0.928 30 H 0.080 0.920 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.092 0.908 36 H 0.090 0.910 37 H 0.087 0.913 38 H 0.111 0.889 39 H 0.100 0.900 40 H 0.088 0.912 41 H 0.095 0.905 42 H 0.098 0.902 43 H 0.238 0.762 44 H 0.081 0.919 45 H 0.089 0.911 46 H 0.091 0.909 47 H 0.083 0.917 48 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 5.068 0.845 -17.971 18.691 hybrid contribution -0.182 1.063 0.816 1.352 sum 4.886 1.907 -17.155 17.938 Atomic orbital electron populations 1.21885 0.94263 1.01994 1.01734 1.20944 0.96353 0.95587 0.95305 1.21775 1.00916 0.94701 1.02158 1.21612 1.00397 0.95215 0.97460 1.21960 1.01891 0.96120 0.97411 1.21680 0.99907 0.96264 0.83582 1.47863 1.54774 1.12223 1.16943 1.20321 0.78720 0.86385 0.85032 1.90695 1.47328 1.19755 1.81877 1.19626 0.80949 0.85717 0.84663 1.90441 1.49118 1.22380 1.79110 1.48721 1.42643 1.22712 1.16192 1.22599 0.93786 0.85085 1.00573 1.22834 0.96177 1.01467 0.95450 1.19503 0.87659 0.85604 0.86460 1.86098 1.71680 1.39013 1.42681 1.21575 0.94481 1.27059 1.14317 0.91298 1.25088 0.95743 0.95760 0.96696 1.69581 1.15283 1.40486 1.28242 0.86322 0.81392 0.79501 0.79564 1.19539 1.20694 1.20734 1.23286 1.00890 0.98540 0.79615 1.22958 1.00634 0.79325 1.01336 0.92390 0.92486 0.92785 0.92002 0.92564 0.92516 0.91806 0.91848 0.90826 0.91012 0.91349 0.88895 0.89958 0.91182 0.90526 0.90237 0.76209 0.91901 0.91140 0.90935 0.91725 0.83800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.57 7.99 37.16 0.30 -1.28 16 2 C -0.08 -0.84 0.77 -154.38 -0.12 -0.96 16 3 C -0.14 -1.25 8.48 37.16 0.32 -0.93 16 4 C -0.11 -0.94 4.71 -26.69 -0.13 -1.06 16 5 C -0.14 -1.21 5.74 -26.61 -0.15 -1.36 16 6 C 0.11 1.19 6.44 -3.71 -0.02 1.16 16 7 N -0.58 -8.15 2.41 -173.27 -0.42 -8.56 16 8 C 0.51 8.83 7.68 -11.58 -0.09 8.74 16 9 O -0.52 -9.56 13.33 5.49 0.07 -9.48 16 10 C 0.51 10.03 7.77 -11.58 -0.09 9.94 16 11 O -0.53 -10.98 13.51 5.50 0.07 -10.90 16 12 N -0.57 -12.00 3.33 -171.01 -0.57 -12.57 16 13 C 0.10 1.98 5.95 -2.53 -0.02 1.96 16 14 C -0.12 -2.48 6.23 -24.59 -0.15 -2.63 16 15 C 0.25 5.97 0.86 -89.93 -0.08 5.89 16 16 O -0.58 -14.76 13.07 -35.23 -0.46 -15.22 16 17 C -0.54 -13.78 8.12 -34.44 -0.28 -14.06 16 18 H 0.07 1.75 7.76 -52.48 -0.41 1.34 16 19 C 0.07 1.79 5.28 -17.82 -0.09 1.70 16 20 N -0.90 -23.33 10.97 55.43 0.61 -22.72 16 21 Si 0.90 20.07 29.54 -169.99 -5.02 15.05 16 22 H -0.27 -5.96 7.11 56.52 0.40 -5.55 16 23 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 24 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 25 C 0.10 2.31 5.54 -3.06 -0.02 2.29 16 26 C 0.08 1.02 4.65 -3.71 -0.02 1.00 16 27 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.06 0.70 5.97 -51.93 -0.31 0.39 16 29 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.07 0.71 6.33 -51.93 -0.33 0.38 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.09 1.11 7.01 -51.93 -0.36 0.74 16 39 H 0.08 1.50 6.36 -51.92 -0.33 1.17 16 40 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 41 H 0.08 1.49 8.03 -51.93 -0.42 1.07 16 42 H 0.08 1.55 8.14 -51.93 -0.42 1.13 16 43 H 0.39 9.97 6.98 45.56 0.32 10.29 16 44 H 0.27 6.74 8.31 -40.82 -0.34 6.40 16 45 H 0.07 1.80 8.07 -51.93 -0.42 1.38 16 46 H 0.07 1.81 7.82 -51.93 -0.41 1.41 16 47 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 48 H 0.15 2.28 4.33 -54.72 -0.24 2.04 16 LS Contribution 368.36 15.07 5.55 5.55 Total: -1.00 -27.59 368.36 -7.91 -35.50 By element: Atomic # 1 Polarization: 20.06 SS G_CDS: -7.11 Total: 12.95 kcal Atomic # 6 Polarization: 11.05 SS G_CDS: -0.64 Total: 10.41 kcal Atomic # 7 Polarization: -43.48 SS G_CDS: -0.38 Total: -43.86 kcal Atomic # 8 Polarization: -35.29 SS G_CDS: -0.31 Total: -35.60 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -5.02 Total: 15.05 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -27.59 -7.91 -35.50 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326213103.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.311 kcal (2) G-P(sol) polarization free energy of solvation -27.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds